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Atwood, Trisha B., Romanou, Anastasia, DeVries, Tim, Lerner, Paul E., Mayorga, Juan S., Bradley, Darcy, Cabral, Reniel B., Schmidt, Gavin A., and Sala, Enric (2024) Atmospheric CO2 emissions and ocean acidification from bottom-trawling. Frontiers in Marine Science, 10. 1125137.

Anthony, Colin J., McDermott, Grace, Lock, Colin, Miller, Therese, Bentlage, Bastian, and Raymundo, Laurie J. (2024) Depth-independent phenotypic variation of massive Porites coral color morphs. Marine Ecology, 45 (1). e12788.

Arbon, P.M., Andrade Martinez, Maria, Garrett, M. Andrade, Jerry, D.R., and Condon, K. (2024) Determining patterns of tissue tropism for IHHNV, GAV and YHV-7 infection in giant black tiger shrimp (Penaeus monodon) using real-time RT-qPCR. Aquaculture, 584. 740680.

Abrantes, K., Wildermann, N., Miller, I.B., Hamann, M., Limpus, C.J., Hof, C.A. Madden, Bell, I., Sheaves, M., and Barnett, A. (2024) Intraspecific variability in flatback turtle habitat use: δ15N as an indicator of foraging locations. Endangered Species Research, 53. pp. 167-180.

Amepou, Yolarnie, Chin, Andrew, Foale, Simon, Sant, Glenn, Smailes, Olivia, and Grant, Michael I. (2024) Maw money, maw problems: A lucrative fish maw fishery in Papua New Guinea highlights a global conservation issue driven by Chinese cultural demand. Conservation Letters, 17 (3). e13006.

Arbon, P.M., Andrade Martinez, M., Jerry, D.R., and Condon, K. (2024) Towards a 'systems' approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, 16 (2). pp. 923-941.

Adams, Vanessa M., Butt, Nathalie, Allen, Stuart, Pressey, Robert L., Engert, Jayden E., and Gallagher, Rachael V. (2023) Protected, cleared, or at risk: The fate of Australian plant species under continued land use change. Biological Conservation, 284. 110201.

Atwood, Trisha B., Sala, Enric, Mayorga, Juan, Bradley, Darcy, Cabral, Reniel B., Auber, Arnaud, Cheung, William, Ferretti, Francesco, Friedlander, Alan M., Gaines, Steven D., Garilao, Cristina, Goodell, Whitney, Halpern, Benjamin S., Hinson, Audra, Kaschner, Kristin, Kesner-Reyes, Kathleen, Leprieur, Fabien, McGowan, Jennifer, Morgan, Lance E., Mouillot, David, Palacios-Abrantes, Juliano, Possingham, Hugh P., Rechberger, Kristin D., Worm, Boris, and Lubchenco, Jane (2023) Reply to: Quantifying the carbon benefits of ending bottom trawling. Nature, 617 (7960). E3-E5.

Adams, Vanessa M., Álvarez-Romero, Jorge G., Ban, Natalie C., Mills, Morena, and Visconti, Piero (2023) Robert L. Pressey (1953-2023). Nature Ecology & Evolution, 7 (12). pp. 1957-1958.

Arbon, P.M., Andrade Martinez, M. Andrade, Jerry, D.R., and Condon, K. (2023) Towards a ‘systems’ approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, 16 (2). pp. 923-941.

Appert, Collette, Udyawer, Vinay, Simpfendorfer, Colin A., Heupel, Michelle R., Scott, Molly, Currey-Randall, Leanne M., Harborne, Alastair R., Jaine, Fabrice, and Chin, Andrew (2023) Use, misuse, and ambiguity of indices of residence in acoustic telemetry studies. Marine Ecology Progress Series, 714. pp. 27-44.

Arjunwadkar, Chaitanya, Tebbett, Sterling B., Bellwood, David, Bourne, David G., and Smith, Hillary A. (2022) Algal turf structure and composition vary with particulate loads on coral reefs. Marine Pollution Bulletin, 181. 113903.

Andrzejaczek, Samantha, Lucas, Tim. C.D., Goodman, Maurice C., Hussey, Nigel E., Armstrong, Amelia J., Carlisle, Aaron, Coffey, Daniel M., Gleiss, Adrian C., Huveneers, Charlie, Jacoby, David M.P., Meekan, Mark G., Mourier, Johann, Peel, Lauren R., dos Santos Abrantes, Katya, Afonso, Andre S., Ajemian, Matthew J., Anderson, Brooke N., Anderson, Scot D., Araujo, Gonzalo, Armstrong, Asia O., Bach, Pascal, Barnett, Adam, Bennett, Mike B., Bezerra, Natalia A., Bonfil, Ramon, Boustany, Andre M., Bowlby, Heather D., Branco, Ilka, Braun, Camrin D., Brooks, Edward J., Brown, Judith, Burke, Patrick J., Butcher, Paul, Castleton, Michael, Chapple, Taylor K., Chateau, Olivier, Clarke, Maurice, Coelho, Rui, Cortes, Enric, Couturier, Lydie I. E., Cowley, Paul D., Croll, Donald A., Cuevas, Juan M., Curtis, Tobey H., Dagorn, Laurent, Dale, Jonathan J., Daly, Ryan, Dewar, Heidi, Doherty, Philip D., Domingo, Andres, Dove, Alistair D. M., Drew, Michael, Dudgeon, Christine L., Duffy, Clinton A. J., Elliott, Riley G., Ellis, Jim R., Erdmann, Mark, Farrugia, Thomas J., Ferreira, Luciana C., Ferretti, Francesco, Filmalter, John D., Finucci, Brittany, Fischer, Chris, Fitzpatrick, Richard, Forget, Fabien, Forsberg, Kerstin, Francis, Malcolm P., Franks, Bryan R., Gallagher, Austin J., Galvan-Magana, Felipe, Garcia, Mirta L., Gaston, Troy F., Gillanders, Bronwyn M., Gollock, Matthew J., Green, Jonathan R., Green, Sofia, Griffiths, Christopher A., Hammerschlag, Neil, Hasan, Abdi, Hawkes, Lucy A., Hazin, Fabio, Heard, Matthew, Hearn, Alex, Hedges, Kevin J., Henderson, Suzanne M., Holdsworth, John, Holland, Kim N., Howey, Lucy A., Hueter, Robert E., Humphries, Nicholas E., Hutchinson, Melanie, Jaine, Fabrice R. A., Jorgensen, Salvador J., Kanive, Paul E., Labaja, Jessica, Lana, Fernanda O., Lassauce, Hugo, Lipscombe, Rebecca S., Llewellyn, Fiona, Macena, Bruno C. L., Mambrasar, Ronald, McAllister, Jaime D., Phillips, Sophy R. McCully, McGregor, Frazer, McMillan, Matthew N., McNaughton, Lianne M., Mendonca, Sibele A., Meyer, Carl G., Meyers, Megan, Mohan, John A., Montgomery, John C., Mucientes, Gonzalo, Musyl, Michael K., Nasby-Lucas, Nicole, Natanson, Lisa J., O'Sullivan, John B., Oliveira, Paulo, Papastamtiou, Yannis P., Patterson, Toby A., Pierce, Simon J., Queiroz, Nuno, Radford, Craig A., Richardson, Andy J., Richardson, Anthony J., Righton, David, Rohner, Christoph A., Royer, Mark A., Saunders, Ryan A., Schaber, Matthias, Schallert, Robert J., Scholl, Michael C., Seitz, Andrew C., Semmens, Jayson M., Setyawan, Edy, Shea, Brendan D., Shidqi, Rafid A., Shillinger, George L., Shipley, Oliver N., Shivji, Mahmood S., Sianipar, Abraham B., Silva, Joana F., Sims, David W., Skomal, Gregory B., Sousa, Lara L., Southall, Emily J., Spaet, Julia L. Y., Stehfest, Kilian M., Stevens, Guy, Stewart, Joshua D., Sulikowski, James A., Syakurachman, Ismail, Thorrold, Simon R., Thums, Michele, Tickler, David, Tolloti, Mariana T., Townsend, Kathy A., Travassos, Paulo, Tyminski, John P., Vaudo, Jeremy J., Veras, Drausio, Wantiez, Laurent, Weber, Sam B., Wells, R. J. David, Weng, Kevin C., Wetherbee, Bradley M., Williamson, Jane E., Witt, Matthew J., Wright, Serena, Zilliacus, Kelly, Block, Barbara A., and Curnick, David J. (2022) Diving into the vertical dimension of elasmobranch movement ecology. Science Advances, 8 (33).

Able, Kenneth W., Simenstad, Charles A., Strydom, Nadine A., Bradley, Michael, and Sheaves, Marcus (2022) Habitat Use and Connectivity. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. Wiley-Blackwell, pp. 188-254.

Arbon, P.M., Condon, K., Andrade Martinez, M., and Jerry, D.R. (2022) Molecular detection of six viral pathogens from Australian wild sourced giant black tiger shrimp (Penaeus monodon) broodstock. Aquaculture, 548. 737651.

Aquino, Jon Irish, Elliott, Lisa, Zeng, Chaoshu, and Paris, Damien B.B.P. (2022) Recent developments in male fertility evaluation, sperm cryopreservation and artificial fertilisation, and their potential application to decapod crustacean aquaculture. Reviews in Aquaculture, 14 (2). pp. 848-889.

Arbon, Phoebe M., Silva, Catarina N.S., Jones, David B., Jaccoud, Damian, Gervis, Mark, Jerry, Dean R., and Strugnell, Jan M. (2021) Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808. Aquaculture Reports, 20. 100746.

Anderson, R Charles, Herrera, Miguel, Ilangakoon, Anoukchika D., Koya, K.M., Moazzam, M., Mustika, Putu L., and Sutaria, Dipani N. (2020) Cetacean bycatch in Indian Ocean tuna gillnet fisheries. Endangered Species Research, 41. pp. 39-53.

Araujo, Gonzalo, Legaspi, Christine, Matthews, Kinsey, Ponzo, Alessandro, Chin, Andrew, and Manjaji-Matsumoto, B. Mabel (2020) Citizen science sheds light on the cryptic ornate eagle ray Aetomylaeus vespertilio. Aquatic Conservation, 30 (10). pp. 2012-2018.

Assis, Juliana M., Abreu, Fernanda, Villela, Helena M.D., Barno, Adam, Valle, Rafael F., Vieira, Rayssa, Taveira, Igor, Duarte, Gustavo, Bourne, David G., Høj, Lone, and Peixoto, Raquel S. (2020) Delivering beneficial microorganisms for corals: rotifers as carriers of probiotic bacteria. Frontiers In Microbiology, 11. 608506.

Allan, Bridie J.M., Illing, Björn, Fakan, Eric P., Narvaez, Pauline, Grutter, Alexandra S., Sikkel, Paul C., McClure, Eva C., Rummer, Jodie L., and McCormick, Mark (2020) Parasite infection directly impacts escape response and stress levels in fish. Journal of Experimental Biology, 223 (16). jeb230904.

Atherton, Jennifer A., and McCormick, Mark I. (2020) Parents know best: transgenerational predator recognition through parental effects. PeerJ, 8. e9340.

Abesamis, Rene A., Utzurrum, Jean Asuncion T., Raterta, Lucille Jean J., and Russ, Garry R. (2020) Shore-fish assemblage structure in the central Philippines from shallow coral reefs to the mesophotic zone. Marine Biology, 167 (12). 185.

Armstrong, Amelia J., Armstrong, Asia O., Bennett, Michael B., McGregor, Frazer, Abrantes, Kátya G., Barnett, Adam, Richardson, Anthony J., Townsend, Kathy A., and Dudgeon, Christine L. (2020) The geographic distribution of reef and oceanic manta rays (Mobula alfredi and Mobula birostris) in Australian coastal waters. Journal of Fish Biology, 96 (3). pp. 835-840.

Abrantes, Kátya G., Sheaves, Marcus, and Fries, Jakob (2019) Estimating the value of tropical coastal wetland habitats to fisheries: caveats and assumptions. PLoS ONE, 14 (4). e0215350.

Ahasan, Md. Shamim, Kinobe, Robert, Elliott, Lisa, Owens, Leigh, Scott, Jenni, Picard, Jacqueline, Huerlimann, Roger, and Ariel, Ellen (2019) Bacteriophage versus antibiotic therapy on gut bacterial communities of juvenile green turtle, Chelonia mydas. Environmental Microbiology, 21 (8). pp. 2871-2885.

Arroyo, Francine, Pawlowska, Teresa E., Choat, J. Howard, Clements, Kendall D., and Angert, Esther R. (2019) Recombination contributes to population diversification in the polyploid intestinal symbiont Epulopiscium sp. type B. ISME Journal, 13 (4). pp. 1084-1097.

Aguilar, Catalina, Raina, Jean-Baptiste, Fôret, Sylvain, Hayward, David C., Lapeyre, Bruno, Bourne, David G., and Miller, David J. (2019) Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress. BMC Genomics, 20. 148.

Abrantes, Kátya G., Brunnschweiler, Juerg M., and Barnett, Adam (2018) You are what you eat: examining the effects of provisioning tourism on shark diets. Biological Conservation, 224. pp. 300-308.

Ahasan, Md. Shamim, Waltzek, Thomas, Huerlimann, Roger, and Ariel, Ellen (2018) Comparative analysis of gut bacterial communities of green turtles (Chelonia mydas) pre-hospitalization and post-rehabilitation by high-throughput sequencing of bacterial 16S rRNA gene. Microbiological Research, 207. pp. 91-99.

Al-Breiki, Rufaida Dhuhai, Kjeldsen, Shannon R., Afzal, Hasifa, Al Hinai, Manal Saif, Zenger, Kyall R., Jerry, Dean R., Al-Abri, Mohammed Ali, and Delghandi, Madjid (2018) Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline. BMC Genomics, 19. 690.

Angell, Alex, de Nys, Rocky, Mangott, Arnold, and Vucko, Matthew J. (2018) The effects of concentration and supplementation time of natural and synthetic sources of astaxanthin on the colouration of the prawn Penaeus monodon. Algal Research, 35. pp. 577-585.

Angell, Alex R., Paul, Nicholas A., and de Nys, Rocky (2017) A comparison of protocols for isolating and concentrating protein from the green seaweed Ulva ohnoi. Journal of Applied Phycology, 29 (2). pp. 1011-1026.

Ahasan, Md. Shamim, Waltzek, Thomas B., Huerlimann, Roger, and Ariel, Ellen (2017) Fecal bacterial communities of wild-captured and stranded green turtles (Chelonia mydas) on the Great Barrier Reef. FEMS Microbiology Ecology, 93 (12). fix139.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2017) Kin recognition in embryonic damselfishes. Oikos, 126 (7). pp. 1062-1069.

Almany, Glenn R., Planes, Serge, Thorrold, Simon R., Berumen, Michael L., Bode, Michael, Saenz-Agudelo, Pablo, Bonin, Mary C., Frisch, Ashley J., Harrison, Hugo B., Messmer, Vanessa, Nanninga, Gerrit B., Priest, Mark A., Srinivasan, Maya, Sinclair-Taylor, Tane, Williamson, David H., and Jones, Geoffrey P. (2017) Larval fish dispersal in a coral-reef seascape. Nature Ecology & Evolution, 1 (6). pp. 1-4.

Allan, Bridie J.M., Domenici, Paolo, Watson, Sue Ann, Munday, Philip L., and McCormick, Mark I. (2017) Warming has a greater effect than elevated CO2 on predator prey interactions in coral reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1857). 20171784. pp. 1-9.

Abom, Rickard, and Schwarzkopf, Lin (2016) Short-term responses of reptile assemblages to fire in native and weedy tropical savannah. Global Ecology and Conservation, 6. pp. 58-66.

Andreakis, Nikolaos, Costello, Paul, Zanolla, Marianela, Saunders, Gary W., and Mata, Leonardo (2016) Endemic or introduced? Phylogeography of Asparagopsis (Florideophyceae) in Australia reveals multiple introductions and a new mitochondrial lineage. Journal of Phycology, 52 (1). pp. 141-147.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) The protein content of seaweeds: a universal nitrogen-to-protein conversion factor of five. Journal of Applied Phycology, 28 (1). pp. 511-524.

Angly, Florent E., Pantos, Olga, Morgan, Thomas C., Rich, Virginia, Tonin, Hemerson, Bourne, David G., Mercurio, Philip, Negri, Andrew P., and Tyson, Gene W. (2016) Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PeerJ, 4. e1758. pp. 1-23.

Albalat, Amaya, Nadler, Lauren E., Foo, Nicholas, Dick, James R., Watts, Andrew J.R., Philp, Heather, Neil, Douglas M., and Monroig, Oscar (2016) Lipid composition of oil extracted from wasted Norway lobster (Nephrops norvegicus) heads and comparison with oil extracted from Antarctic krill (Euphasia superba). Marine Drugs, 14 (12). 219. pp. 1-13.

Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., and Tyson, Gene W. (2016) Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ, 4. e1511. pp. 1-24.

Andrews, Kimberly R., Williams, Ashley J., Fernandez-Silva, Iria, Newman, Steve J., Copus, Joshua M., Wakefield, Corey B., Randall, John E., and Bowen, Brian W. (2016) Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic. Molecular Phylogenetics and Evolution, 100. pp. 361-371.

Angell, Alex R., Angell, Simon F., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed as a protein source for mono-gastric livestock. Trends in Food Science and Technology, 54. pp. 74-84.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

Abesamis, Rene A., Jadloc, Claro Renato L., and Russ, Garry R. (2015) Varying annual patterns of reproduction in four species of coral reef fish in a monsoonal environment. Marine Biology, 162 (10). pp. 1993-2006.

Alajmi, Fahad, Zeng, Chaoshu, and Jerry, Dean R. (2015) Domestication as a novel approach for improving the cultivation of calanoid copepods: a case study with Parvocalanus crassirostris. PLoS ONE, 10 (7). e0133269. pp. 1-16.

Abrantes, Kátya G., Barnett, Adam, Baker, Ronald, and Sheaves, Marcus (2015) Habitat-specific food webs and trophic interactions supporting coastal-dependent fishery species: an Australian case study. Reviews in Fish Biology and Fisheries, 25 (2). pp. 337-363.

Adlard, Robert D., Miller, Terrence L., and Smit, Nico J. (2015) The butterfly effect: parasite diversity, environment, and emerging disease in aquatic wildlife. Trends in Parasitology, 31 (4). pp. 160-166.

Allan, Bridie J.M., Domenici, Paolo, Munday, Philip L., and McCormick, Mark I. (2015) Feeling the heat: the effect of acute temperature changes on predator–prey interactions in coral reef fish. Conservation Physiology, 3 (1). cov011. pp. 1-8.

Akhila, Dharnappa Sannejal, Mani, Madhu K., Rai, Praveen, Condon, Kelly, Owens, Leigh, and Karunasagar, Indrani (2015) Antisense RNA mediated protection from white spot syndrome virus (WSSV) infection in Pacific white shrimp Litopenaeus vannamei. Aquaculture, 435. pp. 306-309.

Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2015) Active in the sac: damselfish embryos use innate recognition of odours to learn predation risk before hatching. Animal Behaviour, 103. pp. 1-6.

Alajmi, Fahad, and Zeng, Chaoshu (2015) Evaluation of microalgal diets for the intensive cultivation of the tropical calanoid copepod, Parvocalanus crassirostris. Aquaculture Research, 46. pp. 1025-1038.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2015) Indirect and direct effects of salinity on the quantity and quality of total amino acids in Ulva ohnoi (Chlorophyta). Journal of Phycology, 51 (3). pp. 536-545.

Andrews, Allen H., Choat, John H., Hamilton, Richard J., and DeMartini, Edward E. (2015) Refined bomb radiocarbon dating of two iconic fishes of the Great Barrier Reef. Marine and Freshwater Research, 66 (4). pp. 305-316.

Abdul Wahab, Muhammad Azmi, de Nys, Rocky, Abdo, David, Webster, Nicole, and Whalan, Steve (2014) The influence of habitat on post-settlement processes, larval production and recruitment in a common coral reef sponge. Journal of Experimental Marine Biology and Ecology, 461. pp. 162-172.

Alajmi, Fahad, and Zeng, Chaoshu (2014) The effects of stocking density on key biological parameters influencing culture productivity of the calanoid copepod, Parvocalanus crassirostris. Aquaculture, 434. pp. 201-207.

Alajmi, Fahad, Zeng, Chaoshu, and Jerry, Dean R. (2014) Improvement in the reproductive productivity of the tropical calanoid copepod Parvocalanus crassirostris through selective breeding. Aquaculture, 420–421. pp. 18-23.

Abdul Wahab, M., De Nys, R., Webster, N., and Whalan, S. (2014) Phenology of sexual reproduction in the common coral reef sponge, Carteriospongia foliascens. Coral Reefs, 33 (2). pp. 381-394.

Abdul Wahab, Muhammad Azmi, de Nys, Rocky, Webster, Nicole, and Whalan, Steve (2014) Larval behaviours and their contribution to the distribution of the intertidal coral reef sponge Carteriospongia foliascens. PLoS ONE, 9 (5). e98181. pp. 1-13.

Agha, Ramsy, Lezcano, María Ángeles, Labrador, María del Mar, Cirés, Samuel, and Quesada, Antonio (2014) Seasonal dynamics and sedimentation patterns of Microcystis oligopeptide-based chemotypes reveal subpopulations with different ecological traits. Limnology and Oceanography, 59 (3). pp. 861-871.

Abdul Wahab, Muhammad, Fromont, J., Whalan, S., Webster, N., and Andreakis, N. (2014) Combining morphometrics with molecular taxonomy: how different are similar foliose keratose sponges from the Australian tropics? Molecular Phylogenetics and Evolution, 73. pp. 23-39.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2014) Variation in amino acid content and its relationship to nitrogen content and growth rate in Ulva ohnoi (Chlorophyta). Journal of Phycology, 50 (1). pp. 216-226.

Athauda, Saman, and Anderson, Trevor (2014) Effect of temperature and salinity on sex inversion in Asian Seabass (Lates calcarifer): relationship with plasma sex steroids concentration and aromatase activity of gonad and brain. Aquaculture Research, 45. pp. 787-797.

Awruch, Cynthia A., Jones, Susan M., García Asorey, Martin, and Barnett, Adam (2014) Non-lethal assessment of the reproductive status of broadnose sevengill sharks (Notorynchus cepedianus) to determine the significance of habitat use in coastal areas. Conservation Physiology, 2 (1). cou013. pp. 1-14.

Abesamis, Rene A., Green, Alison, Russ, Garry R., and Jadloc, Claro Renato L. (2014) The intrinsic vulnerability to fishing of coral reef fishes and their differential recovery in fishery closures. Reviews in Fish Biology and Fisheries, 24 (4). pp. 1033-1063.

Almany, Glenn R., Hamilton, Richard J., Bode, Michael, Matawai, Manuai, Potuku, Tapas, Saenz-Agudelo, Pablo, Planes, Serge, Berumen, Michael L., Rhodes, Kevin L., Thorrold, Simon R., Russ, Garry R., and Jones, Geoffrey P. (2013) Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Current Biology, 23 (7). pp. 626-630.

Allan, Bridie J.M., Domenici, Paolo, McCormick, Mark I., Watson, Sue-Ann, and Munday, Philip L. (2013) Elevated CO2 affects predator-prey interactions through altered performance. PLoS One, 8 (3). e58520. pp. 1-7.

Andutta, Fernando P., Kingsford, Michael J., and Wolanski, Eric (2012) 'Sticky water' enables the retention of larvae in a reef mosaic. Estuarine, Coastal and Shelf Science , 101. pp. 54-63.

Athauda, Saman, Anderson, Trevor, and de Nys, Rocky (2012) Effect of rearing water temperature on protandrous sex inversion in cultured Asian Seabass (Lates calcarifer). General and Comparative Endocrinology, 175 (3). pp. 416-423.

Abdul Wahab, M.A., de Nys, R., and Whalan, S. (2012) Closing the lifecycle for the sustainable aquaculture of the bath sponge Coscinoderma matthewsi. Aquaculture, 324-325. pp. 281-289.

Andreakis, Nikos, Luter, Heidi M., and Webster, Nicole S. (2012) Cryptic speciation and phylogeographic relationships in the elephant ear sponge Ianthella basta (Porifera, Ianthellidae) from northern Australia. Zoological Journal of the Linnean Society, 166 (2). pp. 225-235.

Angell, Alex R., Pirozzi, Igor, de Nys, Rocky, and Paul, Nicholas A. (2012) Feeding preferences and the nutritional value of tropical algae for the abalone Haliotis asinina. PLoS ONE, 7 (6). e388547. pp. 1-10.

Abrego, David, Willis, Bette L., and van Oppen, Madeleine J.H. (2012) Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLoS ONE, 7 (11). e50311. pp. 1-9.

Abdul Wahab, M.A., De Nys, R., and Whalan, S. (2011) Larval behaviour and settlement cues of a brooding coral reef sponge. Coral Reefs, 30 (2). pp. 451-460.

Aeby, Greta S., Williams, Gareth J., Franklin, Erik C., Haapkyla, Jessica, Harvell, C. Drew, Neale, Stephen, Page, Cathie A., Raymundo, Laurie, Vargas-Ángel, Bernardo, Willis, Bette L., Work, Thierry M., and Davy, Simon K. (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). e16887. pp. 1-9.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Aldred, Nick, Scardino, Andrew, Cavaco, Andreia, de Nys, Rocky, and Clare, Anthony S. (2010) Attachment strength is a key factor in the selection of surfaces by barnacle cyprids (Balanus amphitrite) during settlement. Biofouling, 26 (3). pp. 287-299.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Andrés, Mireia, Rotllant, Guiomar, and Zeng, Chaoshu (2010) Survival, development and growth of larvae of the blue swimmer crab, Portunus pelagicus, cultured under different photoperiod conditions. Aquaculture, 300 (1-4). pp. 218-222.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Anthony, Shelley L., and Thomas, Séverine (2008) Coral Husbandry and Long-Term Coral Survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia. Report. Burgers' Zoo, Arnhem, Netherlands.

Anthony, S.L., Page, C.A., Bourne, D.G., and Willis, B.L. (2008) Newly characterized distinct phases of the coral disease 'atramentous necrosis' on the Great Barrier Reef. Diseases of Aquatic Organisms, 81 (3). pp. 255-259.

Aswani, S., Albert, S., Sabetian, A., and Furusawa, T. (2007) Customary management as precautionary and adaptive principles for protecting coral reefs in Oceania. Coral Reefs, 26 (4). pp. 1009-1021.

Adjeroud, Mehdi, Pratchett, Morgan, Kospartov, Marie, Lejeusne, Christophe, and Penin, Lucie (2007) Small-scale variability in the size structure of scleractinian corals around Moorea, French Polynesia: patterns across depths and locations. Hydrobiologia, 589 (1). pp. 117-126.

Almany, Glenn R., Peacock, Lisa F., Syms, Craig, McCormick, Mark I., and Jones, Geoffrey P. (2007) Predators target rare prey in coral reef fish assemblages. Oecologia, 152 (4). pp. 751-761.

Almany, Glenn R. , Berumen, Michael L., Thorrold, Simon R., Planes, Serge, and Jones, Geoffrey P. (2007) Local replenishment of coral reef fish populations in a marine reserve. Science, 316 (5825). pp. 742-744.

Anthony, Kenneth R.N., Connolly, Sean R., and Hoegh-Guldberg, Ove (2007) Bleaching, energetics, and coral mortality risk: Effects of temperature, light, and sediment regime. Limnology and Oceanography, 52 (2). pp. 716-726.

Abesamis, Rene A., and Russ, Garry R. (2005) Density-dependent spillover from a marine reserve: long-term evidence. Ecological Applications, 15 (5). pp. 1798-1812.

Acosta-Salmon, Hector, and Southgate, Paul C. (2005) Histological changes in the gonad of the blacklip pearl oyster (Pinctada margaritifera Linnaeus, 1758) during the reproductive season in North Queensland, Australia. Molluscan Research, 25 (2). pp. 71-74.

Acosta-Salmón, Héctor, and Southgate, Paul C. (2005) Mantle regeneration in the pearl oysters Pinctada fucata and Pinctada margaritifera. Aquaculture, 246 (1-4). pp. 447-453.

Acosta-Salmón, Héctor, Martínez-Fernández, Erika, and Southgate, Paul C. (2005) Use of relaxants to obtain saibo tissue from the blacklip pearl oyster (Pinctada margaritifera) and the Akoya pearl oyster (Pinctada fucata). Aquaculture, 246 (1-4). pp. 167-172.

Annese, Danielle M., and Kingsford, Michael J. (2005) Distribution, movements and diet of nocturnal fishes on temperate reefs. Environmental Biology of Fishes, 72 (2). pp. 161-174.

Alcala, Angel C., Russ, Garry R., Maypa, Aileen P., and Calumpong, Hilconida C. (2005) A long-term, spatially replicated experimental test of the effect of marine reserves on local fish yields. Canadian Journal of Fisheries and Aquatic Sciences, 62 (1). pp. 98-108.

Anthony, K.R.N., Hoogenboom, M. O., and Connolly, S.R. (2005) Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology, 19 (1). pp. 17-26.

Anthony, Kenneth R. N., and Connolly, Sean R. (2004) Environmental limits to growth: physiological niche boundaries of corals along turbidity - light gradients. Oecologia, 141 (3). pp. 373-384.

Anthony, Kenneth R.N., Ridd, Peter V., Orpin, Alan R., Larcombe, Piers, and Lough, Janice (2004) Temporal variation of light availability in coastal benthic habitats : effects of clouds, turbidity, and tides. Limnology and Oceanography, 49 (6). pp. 2201-2211.

Ackerman, John L., Bellwood, David R., and Brown, James H. (2004) The contribution of small individuals to density-body size relationships: examination of energetic equivalence in reef fishes. Oecologia, 139 (4). pp. 568-571.

Ayre, David J., and Hughes, Terence P. (2004) Climate change, genotypic diversity and gene flow in reef-building corals. Ecology Letters, 7 (4). pp. 273-278.

Acosta-Salmon, Hector, Martinez-Fernandez, Erika, and Southgate, Paul C. (2004) A new approach to pearl oyster broodstock selection: can saibo donors be used as future broodstock? Aquaculture, 231 (1 - 4). pp. 205-214.

Appleford, Peter, Lucas, John S., and Southgate, Paul (2003) General principles. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Blackwell Publishing, Oxford, UK, pp. 11-46.

Ackerman, John L., and Bellwood, David R. (2003) The contribution of small individuals to density-body size relationships. Oecologia, 136 (1). pp. 137-140.

Anthony, K.R.N., and Hoegh-Guldberg, O. (2003) Variation in coral photosynthesis, respiration and growth characteristics in contrasting light microhabitats: an analogue to plants in forest gaps and understoreys? Functional Ecology, 17 (2). pp. 246-259.

Anthony, Kenneth R.N., and Hoegh-Guldberg, Ove (2003) Kinetics of photoacclimation in corals. Oecologia, 134 (1). pp. 23-31.

Adams, S. (2003) Morphological ontogeny of the gonad of three plectropomid species through sex differentiation and transition. Journal of Fish Biology, 63 (1). pp. 22-36.

Arango, C.P., and Brodie, G.D. (2003) Observations of predation on the tropical Nudibranch Okenia sp. by sea spider Anoplodactylus longiceps Williams (Arthropoda: Pycnogonida). The Veliger, 46 (1). pp. 99-101.

Austin, C.M., Nguyen, T.T.T., Meewan, M. M., and Jerry, D.R. (2003) The taxonomy and phylogeny of the 'Cherax destructor' complex (Decapoda: Parastacidae) examined using mitochondrial 16S sequences. Australian Journal of Zoology, 51 (2). pp. 99-110.

Ackerman, J.L., and Bellwood, D.R. (2002) Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages. Journal of Fish Biology, 60 (4). pp. 893-901.

Anthony, Kenneth R.N., Connolly, Sean R., and Willis, Bette L. (2002) Comparative analysis of energy allocation to tissue and skeletal growth in corals. Limnology and Oceanography, 47 (5). pp. 1417-1429.

Anthony, K.R.N., and Larcombe, P. (2002) Coral reefs in turbid waters: sediment-induced stresses in corals and likely mechanisms of adaptation. In: Moosa, M. Kasim, Soemodihardjo, Subagjo, Soegiarto, Aprilani, Romimohtarto, Kasijan, Nontji, Anugerah, Soekarno, and Suharsono, (eds.) Procedings of the 9th International Coral Reef Symposium. Ministery of Environment, Indonesian Institute of Sciences and International Society for Reef Studies, Bali, Indonesia, pp. 239-244.

Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabriele (2002) Larval reef fish could use odour for detection, retention and orientation to reefs. Marine Ecology Progress Series, 241. pp. 151-160.

Alcala, C., and Russ, G.R. (2002) Role of socioeconomic factors in coral reef protection and management. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 29-32. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Alcala, A.C., and Russ, G.R. (2002) Status of Philippine coral reef fisheries. Asian Fisheries Science, 15 (2). pp. 177-192.

Adams, S., and Williams, A.J. (2001) A preliminary test of the transitional growth spurt hypothesis using the protogynous coral trout Plectropomus maculatus. Journal of Fish Biology, 59 (1). pp. 183-185.

Ackerman, John L., and Bellwood, David R. (2000) Reef fish assemblages: a re-evaluation using enclosed rotenone stations. Marine Ecology-Progress Series, 206. pp. 227-237.

Ayre, David J., and Hughes, Terence P. (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54 (5). pp. 1590-1605.

Anthony, Kenneth R.N., and Fabricius, Katharina E. (2000) Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology, 252 (2). pp. 221-253.

Adams, S., Mapstone, B.D., Russ, G.R., and Davies, C.R. (2000) Geographic variation in the sex ratio, sex specific size, and age structure of Plectropomus leopardus (Serranidae) between reefs open and closed to fishing on the Great Barrier Reef. Canadian Journal of Fisheries and Aquatic Sciences, 57 (7). pp. 1448-1458.

Arvedlund, M., McCormick, M.I., and Ainsworth, T. (2000) Effects of photoperiod on growth of larvae and juveniles of the anemonefish Amphiprion melanopus. Naga - The ICLARM Quarterly , 23 (2). pp. 18-23.

Anthony, K.R.N. (2000) Enhanced particle-feeding capacity of corals on turbid reefs (Great Barrier Reef, Australia). Coral Reefs, 19 (1). pp. 59-67.

Arvedlund, Michael, Bundgaard, Ingvar, and Nielsen, Lis E. (2000) Host imprinting in anemonefishes (Pisces: Pomacentridae): does it dictate spawning site preferences? Environmental Biology of Fishes, 58 (2). pp. 203-213.

Arvedlund, Michael, Larsen, Kim, and Winsor, Heather (2000) The embryonic development of the olfactory system in Amphiprion melanopus (Perciformes: Pomacentridae) related to the host imprinting hypothesis. Journal of the Marine Biological Association of the United Kingdom, 80 (6). pp. 1103-1109.

Anthony, Kenneth R.N. (1999) Coral suspension feeding on fine particulate matter. Journal of Experimental Marine Biology and Ecology, 232 (1). pp. 85-106.

Arvedlund, Michael, McCormick, Mark I., Fautin, Daphne G., and Bildsøe, Mogens (1999) Host recognition and possible imprinting in the anemonefish Amphiprion melanopus (Pisces: Pomacentridae). Marine Ecology Progress Series, 188. pp. 207-218.

Acheampong, Emmanuel Opoku (2016) Impact of roads on farm size, market participation, and forest cover change in rural Ghana. Masters (Research) thesis, James Cook University.

Angell, Alex Raymond (2016) Seaweeds as an alternative crop for the production of protein. PhD thesis, James Cook University.

Alajmi, Fahad F. (2015) Developing intensive culture techniques for the tropical copepod Parvocalanus crassirostris as a live feed for aquaculture. PhD thesis, James Cook University.

Atherton, Jennifer Ann (2015) The effect of parental and embryonic predator environments on offspring. PhD thesis, James Cook University.

Allan, Bridie Jean Marie (2015) The effects of climate change on predator-prey interactions in coral reef fish. PhD thesis, James Cook University.

Athauda, A.R. Saman Bandara (2014) Effect of culture environmental conditions on sex inversion of Asian seabass (barramundi), Lates calcarifer (Bloch). PhD thesis, James Cook University.

Adkins, Merritt Elizabeth (2014) Large bodied fish communities and drivers of use in the shallow waters of a coastal habitat mosaic. Masters (Research) thesis, James Cook University.

Abdul Wahab, Muhammad Azmi (2014) A holistic approach towards understanding population dynamics of a coral reef sponge. PhD thesis, James Cook University.

Abesamis, Rene A. (2011) Replenishment and connectivity of reef fish populations in the central Philippines. PhD thesis, James Cook University.

Acosta-Salmon, Hector (2004) Broodstock management and egg quality of the pearl oysters Pinctada margaritifera and Pinctada fucata. PhD thesis, James Cook University.

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Briggs, Nico D., Page, Cathie A., Giuliano, Christine, Alessi, Cinzia, Hoogenboom, Mia, Bay, Line K., and Randall, Carly J. (2024) Dissecting coral recovery: bleaching reduces reproductive output in Acropora millepora. Coral Reefs, 43. pp. 557-569.

Barnett, Adam, Jaine, Fabrice R.A., Bierwagen, Stacy L., Lubitz, Nicolas, Abrantes, Kátya, Heupel, Michelle R., Harcourt, Robert, Huveneers, Charlie, Dwyer, Ross G., Udyawer, Vinay, Simpfendorfer, Colin A., Miller, Ingo B., Scott-Holland, Tracey, Kilpatrick, Carley S., Williams, Samuel M., Smith, Daniel, Dudgeon, Christine L., Hoey, Andrew S., Fitzpatrick, Richard, Osborne, Felicity E., Smoothey, Amy F., Butcher, Paul A., Sheaves, Marcus, Fisher, Eric E., Svaikauskas, Mark, Ellis, Megan, Kanno, Shiori, Cresswell, Benjamin J., Flint, Nicole, Armstrong, Asia O., Townsend, Kathy A., Mitchell, Jonathan D., Campbell, Matthew, Peddemors, Victor M., Gustafson, Johan A., and Currey-Randall, Leanne M. (2024) From little things big things grow: enhancement of an acoustic telemetry network to monitor broad-scale movements of marine species along Australia’s east coast. Movement Ecology, 12. 31.

Bellwood, David R., Bellwood, Orpha, Bellwood, Hannah R., and Bellwood, Oliver R. (2024) Sixteenth century recessed armour: evaluating links with the Spanish Armada. Arms and Armour, 21 (1). pp. 48-78.

Bellwood, David R., Brandl, Simon J., Mcwilliam, Mike, Streit, Robert P., Yan, Helen F., and Tebbett, Sterling B. (2024) Studying functions on coral reefs: past perspectives, current conundrums, and future potential. Coral Reefs, 43. pp. 281-297.

Bradley, Michael, Dubuc, Alexia, Piggott, Camilla V.H., Sambrook, Katie, Hoey, Andrew S., Depczynski, Martial, Langlois, Tim J., Gagliano, Monica, Wilson, Shaun K., Cure, Katherine, Holmes, Thomas H., Moore, Glenn I., Travers, Michael, Baker, Ronald, Nagelkerken, Ivan, and Sheaves, Marcus (2024) The fish–mangrove link is context dependent: Tidal regime and reef proximity determine the ecological role of tropical mangroves. Fish and Fisheries, 25 (3). pp. 523-541.

Bergseth, Brock J., Arias, Adrian, Barnes, Michele L., Caldwell, Iain, Datta, Amber, Gelcich, Stefan, Ham, Sam H., Lau, Jacqueline D., Ruano-Chamorro, Cristina, Smallhorn-West, Patrick, Weekers, Damian, Zamborain-Mason, Jessica, and Cinner, Joshua E. (2023) Closing the compliance gap in marine protected areas with human behavioural sciences. Fish and Fisheries, 24. pp. 695-704.

Baird, Andrew, Prior, Susan, Bridge, Thomas, and Cowman, Peter (2023) First records of coral spawning on Norfolk Island. Galaxea, Journal of Coral Reef Studies, 25 (1). pp. 3-4.

Budd, Alyssa M., Schils, Tom, Cooper, Madalyn K., Lyons, Mitchell B., Mills, Matthew S., Deinhart, Mari E., Le Port, Agnes, Huerlimann, Roger, and Strugnell, Jan M. (2023) Monitoring threatened species with environmental DNA and open ecological data: Local distribution and habitat preferences of scalloped hammerhead sharks (Sphyrna lewini). Biological Conservation, 278 (February 2023). 109881.

Bansemer, Matthew S., Salini, Michael J., Nankervis, Leo, and Stone, David A.J. (2023) Reducing dietary wild derived fishmeal inclusion levels in production diets for large yellowtail kingfish (Seriola lalandi). Aquaculture, 572. 739487.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley L., Nagelkerken, Ivan, Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2023) Seafloor Terrain Shapes the Three-dimensional Nursery Value of Mangrove and Seagrass Habitats. Ecosystems, 26. pp. 442-456.

Bradley, Michael, Sheaves, Marcus, and Waltham, Nathan J. (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science, 9. 1034039.

Bertola, Lorenzo V., Hoskin, Conrad J., Jones, David B., Zenger, Kyall R., McKnight, Donald T., and Higgie, Megan (2023) The first linkage map for Australo-Papuan Treefrogs (family: Pelodryadidae) reveals the sex-determination system of the Green-eyed Treefrog (Litoria serrata). Heredity, 131. pp. 263-272.

Budd, Alyssa M., Guppy, Jarrod L., Thepot, Valentin, Domingos, Jose A., and Jerry, Dean R. (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560. 738541.

Baje, Leontine, Chin, Andrew, White, William T., and Simpfendorfer, Colin A. (2022) Dietary overlap of carcharhinid sharks in the Gulf of Papua. Marine and Freshwater Research, 73 (5). pp. 605-614.

Bourne, David G, Smith, Hillary, and Page, Cathie (2022) Diseases of scleractinian corals. In: Rowley, Andrew F., Coates, Christopher J., and Whitten, Miranda W., (eds.) Invertebrate Pathology. Oxford University Press, Oxford, UK, pp. 77-108.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley J., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Dredging fundamentally reshapes the ecological significance of 3D terrain features for fish in estuarine seascapes. Landscape Ecology, 37. pp. 1385-1400.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley J., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Dredging transforms the seafloor and enhances functional diversity in urban seascapes. Science of the Total Environment, 831. 154811.

Budd, Alyssa M., Robins, Julie B., Whybird, Olivia, and Jerry, Dean R. (2022) Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12 (3). e8730.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, Travers, Michael, and Sheaves, Marcus (2022) Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions. Ecosystems, 25. pp. 237-251.

Barnett, Adam, Fitzpatrick, Richard, Bradley, Michael, Miller, Ingo, Sheaves, Marcus, Chin, Andrew, Smith, Bethany, Diedrich, Amy, Yick, Jonah, Lubitz, Nicolas, Crook, Kevin, Mattone, Carlo, Bennett, Mike B., Wojtach, Leah, and Abrantes, Katya (2022) Scientific response to a cluster of shark bites. People and Nature, 4 (4). pp. 963-982.

Buddle, Alice L., Van Dyke, James U., Thompson, Michael B., Simpfendorfer, Colin A., Murphy, Christopher R., Day, Margot L., and Whittington, Camilla M. (2022) Structure and permeability of the egg capsule of the placental Australian sharpnose shark, Rhizoprionodon taylori. Journal of Comparative Physiology B: Biochemical Systemic and Environmental Physiology, 192. pp. 263-273.

Bouyoucos, Ian A., Simpfendorfer, Colin A., Planes, Serge, Schwieterman, Gail D., Weideli, Ornella C., and Rummer, Jodie L. (2022) Thermally insensitive physiological performance allows neonatal sharks to use coastal habitats as nursery areas. Marine Ecology Progress Series, 682. pp. 137-152.

Booth, Mark A., and Pirozzi, Igor (2022) The digestible histidine requirement of juvenile yellowtail kingfish Seriola lalandi. Aquaculture, 548 (Part 1). 737543.

Brunner, Christopher, Uthicke, Sven, Ricardo, Gerard F., Hoogenboom, Mia O., and Negri, Andrew P. (2021) Climate change doubles sedimentation-induced coral recruit mortality. Science of the Total Environment, 768. 143897.

Bartes, Saia, Simpfendorfer, Colin, Walker, Terence I., King, Carissa, Loneragan, Neil, and Braccini, Matías (2021) Conventional tagging of sharks in Western Australia: the main commercial species exhibit contrasting movement patterns. Marine and Freshwater Research, 72 (11).

Bairos-Novak, Kevin R., Hoogenboom, Mia O., van Oppen, Madeleine J., and Connolly, Sean (2021) Coral adaptation to climate change: meta-analysis reveals high heritability across multiple traits. Global Change Biology, 27 (22). pp. 5694-5710.

Bucol, Abner A., Abesamis, Rene A., Stockwell, Brian L., Lowe, Jake R., and Russ, Garry R. (2021) Development of reproductive potential in protogynous coral reef fishes within Philippine no-take marine reserves. Journal of Fish Biology, 99 (5). pp. 1561-1575.

Banh, Quyen Q.T., Domingos, Jose A., Pinto, Ricardo C.C., Nguyen, Kien T., and Jerry, Dean R. (2021) Dietary 17 β-oestradiol and 17 α-ethinyloestradiol alter gonadal morphology and gene expression of the two sex-related genes, dmrt1 and cyp19a1a, in juvenile barramundi (Lates calcarifer Bloch). Aquaculture Research, 52 (4). pp. 1414-1430.

Baje, Leontine, Chin, Andrew, White, William T., and Simpfendorfer, Colin (2021) Ecological risk assessment of elasmobranchs caught in the Gulf of Papua prawn fishery. Aquatic Conservation: marine and freshwater ecosystems, 31 (11). pp. 3100-3110.

Berry, K.L.E., Hess, S., Clark, T.D., Wenger, A.S., Hoogenboom, M.O., and Negri, A.P. (2021) Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish. Marine Pollution Bulletin, 169. 112459.

Barton, Jonathan A., Neil, Rachel C., Humphrey, Craig, Bourne, David G., and Hutson, Kate S. (2021) Efficacy of chemical treatments for Acropora-eating flatworm infestations. Aquaculture, 532. 735978.

Budd, Alyssa M., Cooper, Madalyn K., Le Port, Agnès, Schils, Tom, Mills, Matthew S., Deinhart, Mari E., Huerlimann, Roger, and Strugnell, Jan M. (2021) First detection of critically endangered scalloped hammerhead sharks (Sphyrna lewini) in Guam, Micronesia, in five decades using environmental DNA. Ecological Indicators, 127. 107649.

Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601.

Bouyoucos, Ian, Trujillo, Jose E., Weideli, Ornella C., Nakamura, Nao, Mourier, Johann, Planes, Serge, Simpfendorfer, Colin A., and Rummer, Jodie L. (2021) Investigating links between thermal tolerance and oxygen supply capacity in shark neonates from a hyperoxic tropical environment. Science of the Total Environment, 782. 146854.

Bongaerts, Pim, Cooke, Ira R., Ying, Hua, Wels, Dagmar, den Haan, Stijn, Hernandez-Agreda, Alejandra, Brunner, Christopher A., Dove, Sophie, Englebert, Norbert, Eyal, Gal, Foret, Sylvain, Grinblat, Mila, Hay, Kyra B., Harii, Saki, Hayward, David C., Lin, Yu, Morana, Mihaljevi C., Moya, Aurelie, Muir, Paul, Sinniger, Frederic, Smallhorn-West, Patrick, Torda, Gergely, Ragan, Mark A., van Oppen, Madeleine J.M., and Hoegh-Guldberg, Ove (2021) Morphological stasis masks ecologically divergent coral species on tropical reefs. Current Biology, 31 (11). 2286-2298.e8.

Barr, Claire E., Hamann, Mark, Shimada, Takahiro, Bell, Ian, Limpus, Colin, and Ferguson, Janine (2021) Post-nesting movements and feeding ground distribution by the hawksbill turtle (Eretmochelys imbricata) from rookeries in the Torres Strait. Wildlife Research, 48 (7). pp. 598-608.

Buddle, Alice L., Van Dyke, James U., Thompson, Michael B., Simpfendorfer, Colin A., Murphy, Christopher R., Dowland, Samson N., and Whittington, Camilla M. (2021) Structure of the paraplacenta and the yolk sac placenta of the viviparous Australian sharpnose shark, Rhizoprionodon taylori. Placenta, 108. pp. 11-22.

Bolte, Brett, Goldsbury, Julie, Huerlimann, Roger, Jerry, Dean, and Kingsford, Mike (2021) Validation of eDNA as a viable method of detection for dangerous cubozoan jellyfish. Environmental DNA, 3 (4). pp. 769-779.

Bellwood, David R., Bellwood, Orpha, and Ilming, Thomas (2021) The evolution of black and white or fleur-de-lis high comb morions. Arms and Armour, 18 (2). pp. 163-183.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Leon, Javier X., Schlacher, Thomas A., Connolly, Rod M., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2021) The influence of seafloor terrain on fish and fisheries: a global synthesis. Fish and Fisheries, 22 (4). pp. 707-734.

Booth, Mark A., and Pirozzi, Igor (2021) The interaction of feeding regime and dietary specification on growth and nutrient utilisation in Yellowtail Kingfish Seriola lalandi. Aquaculture, 544. 737094.

Bourillon, Bastien, Acou, Anthony, Trancart, Thomas, Belpaire, Claude, Covaci, Adrian, Bustamante, Paco, Faliex, Elisabeth, Amilhat, Elsa, Malarvannan, Govindan, Virag, Laure, Aarestrup, Kim, Bervoets, Lieven, Boisneau, Catherine, Boulenger, Clarisse, Gargan, Paddy, Becerra-Jurado, Gustavo, Lobon-Cervia, Javier, Maes, Gregory E., Pedersen, Michael Ingemann, Poole, Russell, Sjoberg, Niklas, Wickstrom, Hakan, Walker, Alan, Righton, David, and Feunteun, Eric (2020) Assessment of the quality of European silver eels and tentative approach to trace the origin of contaminants - a European overview. Science of the Total Environment, 743. 140675.

Barton, Jonathan A., Humphrey, Craig, Bourne, David G., and Hutson, Kate S. (2020) Biological controls to manage Acropora-eating flatworms in coral aquaculture. Aquaculture Environment Interactions, 12. pp. 61-66.

Basel, Britt, Goby, Gillian, and Johnson, Johanna (2020) Community-based adaptation to climate change in villages of Western Province, Solomon Islands. Marine Pollution Bulletin, 156. 111266.

Blake, Denise F., Crowe, Melissa, Lindsay, David, Brouff, Annie, Mitchell, Simon, Leggat, Peter, and Pollock, Neal (2020) Comparison of tissue oxygenation achieved breathing oxygen using different delivery devices and flow rates. Diving and Hyperbaric Medicine, 50 (1). pp. 34-42.

Barrios-Garrido, Hector, Shimada, Takahiro, Diedrich, Amy, and Hamann, Mark (2020) Conservation and enforcement capacity index (CECi): integrating human development, economy, and marine turtle status. Journal of Environmental Management, 262. 110311.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, and Sheaves, Marcus (2020) Context dependence: a conceptual approach for understanding the habitat relationships of Coastal Marine Fauna. BioScience, 70 (11). pp. 986-1004.

Bishop, M.J., Murray, N.J., Swearer, S., and Keith, D.A. (2020) MT1.2 Muddy shorelines [In: IUCN Global Ecosystem Typology 2.0: descriptive profiles for biomes and ecosystem functional groups]. Report Section. International Union for Conservation of Nature and Natural Resources, Gland, Switzerland.

Barton, Jonathan A., Bourne, David G., Humphrey, Craig, and Hutson, Kate S. (2020) Parasites and coral-associated invertebrates that impact coral health. Reviews in Aquaculture, 12 (4). pp. 2284-2303.

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Barnett, Adam, Abrantes, Kátya G., Baker, Ronald, Diedrich, Amy S., Farr, Marina, Kuilboer, Alf, Mahony, Tracey, McLeod, Ian, Moscardo, Gianna, Prideaux, Murray, Stoeckl, Natalie, van Luyn, Ariella, and Sheaves, Marcus (2016) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries, 17 (3). pp. 696-713.

Blake, Denise F., and Brown, Lawrence H. (2016) Tissue oxygenation using different oxygen delivery devices and flow rates - Reply. Diving and Hyperbaric Medicine, 46 (1). pp. 58-59.

Beaumont, Linda, Graham, Erin, Duursma, Daisy Englert, Wilson, Peter D., Cabrelli, Abigail, Baumgartner, John B., Hallgren, Willow, Esperon-Rodriguez, Manuel, Nipperess, David A., Warren, Dan L., Laffan, Shawn W., and VanDerWal, Jeremy (2016) Which species distribution models are more (or less) likely to project broad-scale, climate-induced shifts in species ranges? Ecological Modelling, 342. pp. 135-146.

Bourne, David G., Ainsworth, Tracy D., and Willis, Bette L. (2016) White syndromes of Indo-Pacific corals. In: Woodley, Cheryl M., Downs, Craig A., Bruckner, Andrew W., Porter, James W., and Galloway, Sylvia B., (eds.) Diseases of Coral. John Wiley & Sons, Hoboken, NJ, USA, pp. 300-331.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Bottesch, Michael, Gerlach, Gabriele, Halbach, Maurits, Andreas, Bally, Kingsford, Michael J., and Mouritsen, Henrik (2016) A magnetic compass that might help coral reef fish larvae return to their natal reef. Current Biology, 26 (24). R1266-R1267.

Barros, Breno, Sakai, Yoichi, Pereira, Pedro H.C., Gasset, Eric, Buchet, Vincent, Maamaatuaiahutapu, Moana, Ready, Jonathan S., Oliveira, Yrlan, Giarrizzo, Tommaso, and Vallinoto, Marcelo (2015) Comparative allometric growth of the mimetic ephippid reef fishes Chaetodipterus faber and Platax orbicularis. PLoS ONE, 10 (12). e0143838.

Bellwood, David R., Goatley, Christopher H.R., Bellwood, Orpha, Delbarre, Daniel J., and Friedman, Matt (2015) The rise of jaw protrusion in spiny-rayed fishes closes the gap on elusive prey. Current Biology, 25 (20). pp. 2696-2700.

Basiita, Rose K., Zenger, Kyall R., Mwanja, Matthew T., and Jerry, Dean R. (2015) Development of genome-wide microsatellite genetic resources in a commercially important African freshwater fish species – the Nile perch, Lates niloticus. Animal Genetics, 46 (3). p. 340.

Budd, Alyssa M., Banh, Quyen Q., Domingos, Jose A., and Jerry, Dean R. (2015) Sex control in fish: approaches, challenges and opportunities for aquaculture. Journal of Marine Science and Engineering, 3 (2). jmse3020329. pp. 329-355.

Boaden, A.E., and Kingsford, M.J. (2015) Predators drive community structure in coral reef fish assemblages. Ecosphere, 6 (4). 46. pp. 1-33.

Bradley, Michael, Van Putten, Ingrid, and Sheaves, Marcus (2015) The pace and progress of adaptation: marine climate change preparedness in Australia's coastal communities. Marine Policy, 53. pp. 13-20.

Brazenor, Alexander K., and Hutson, Kate S. (2015) Effects of temperature and salinity on the life cycle of Neobenedenia sp. (Monogenea: Capsalidae) infecting farmed barramundi (Lates calcarifer ). Parasitology Research, 114 (5). pp. 1875-1886.

Buelow, Christina, and Sheaves, Marcus (2015) A birds-eye view of biological connectivity in mangrove systems. Estuarine, Coastal and Shelf Science, 152. pp. 33-43.

Brandl, Simon J., Robbins, William D., and Bellwood, David R. (2015) Exploring the nature of ecological specialization in a coral reef fish community: morphology, diet and foraging microhabitat use. Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1815). 20151147. pp. 1-10.

Baker, Ronald, Sheaves, Marcus, and Johnston, Ross (2015) Geographic variation in mangrove flooding and accessibility for fishes and nektonic crustaceans. Hydrobiologia, 762 (1). pp. 1-14.

Bergseth, Brock J., Russ, Garry R., and Cinner, Joshua E. (2015) Measuring and monitoring compliance in no-take marine reserves. Fish and Fisheries, 16 (2). pp. 240-258.

Berner, Florian, Heimann, Kirsten, and Sheehan, Madoc (2015) Microalgal biofilms for biomass production. Journal of Applied Phycology, 27 (5). pp. 1793-1804.

Bourne, D.G., Ainsworth, T.D., Pollock, F.J., and Willis, B.L. (2015) Towards a better understanding of white syndromes and their causes on Indo-Pacific coral reefs. Coral Reefs, 34 (1). pp. 233-242.

Brooker, Rohan M., Munday, Philip L., Chivers, Douglas P., and Jones, Geoffrey P. (2015) You are what you eat: diet-induced chemical crypsis in a coral-feeding reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1799). 20141887.

Bellwood, David R., Goatley, Christopher H.R., Cowman, Peter F., and Bellwood, Orpha (2015) The evolution of fishes on coral reefs: fossils, phylogenies and functions. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 55-63.

Berner, Florian, Heimann, Kirsten, and Sheehan, Madoc (2015) A perfused membrane biofilm reactor for microalgae cultivation in tropical conditions. In: Proceedings of the 16th Asia Pacific Confederation of Chemical Engineering Congress (2015) 3133047. pp. 291-301. From: APCChE 2015: 16th Asia Pacific Confederation of Chemical Engineering Congress, 27 September - 1 October 2015, Melbourne, VIC, Australia.

Bonin, Mary C., Boström-Einarsson, Lisa, Munday, Philip L., and Jones, Geoffrey P. (2015) The prevalence and importance of competition among coral reef fishes. Annual Review of Ecology, Evolution, and Systematics, 46. pp. 169-190.

Bentley, B.P., Harvey, E.S., Newman, S.J., Welch, D.J., Smith, A.K., and Kennington, W.J. (2014) Local genetic patchiness but no regional differences between Indo-West Pacific populations of the dogtooth tuna Gymnosarda unicolor. Marine Ecology Progress Series, 506. pp. 267-277.

Brandl, S.J., Hoey, A.S., and Bellwood, D.R. (2014) Micro-topography mediates interactions between corals, algae, and herbivorous fishes on coral reefs. Coral Reefs, 33 (2). pp. 421-430.

Brandl, Simon J., and Bellwood, David R. (2014) Individual-based analyses reveal limited functional overlap in a coral reef fish community. Journal of Animal Ecology, 83 (3). pp. 661-670.

Ban, Stephen S., Graham, Nicholas A.J., and Connolly, Sean R. (2014) Evidence for multiple stressor interactions and effects on coral reefs. Global Change Biology, 20 (3). pp. 681-697.

Baker, Ronald, Buckland, Amanda, and Sheaves, Marcus (2014) Fish gut content analysis: robust measures of diet composition. Fish and Fisheries, 15 (1). pp. 170-177.

Bellwood, David R., Hoey, Andrew S., Bellwood, Orpha, and Goatley, Christopher H.R. (2014) Evolution of long-toothed fishes and the changing nature of fish-benthos interactions on coral reefs. Nature Communications, 5. 3144. pp. 1-6.

Bowden, A.J., Gardiner, N.M., Couturier, C.S., Stecyk, J.A.W, Nilsson, G.E., Munday, P.L., and Rummer, J.L. (2014) Alterations in gill structure in tropical reef fishes as a result of elevated temperatures. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 175. pp. 64-71.

Burge, Colleen A., Eakin, C. Mark, Friedman, Carolyn S., Froelich, Brett, Hershberger, Paul K., Hofmann, Eileen E., Petes, Laura E., Prager, Katherine C., Weil, Ernesto, Willis, Bette, Ford, Susan E., and Harvell, C. Drew (2014) Climate change influences on marine infectious diseases: implications for management and society. Annual Review of Marine Science, 6. pp. 249-277.

Bellwood, D.R., Goatley, C.H.R., Brandl, S.J., and Bellwood, O. (2014) Fifty million years of herbivory on coral reefs: fossils, fish and functional innovations. Proceedings of the Royal Society of London Series B, Biological Sciences, 281. 20133046. pp. 1-8.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2014) Habitat degradation modifies the strength of interspecific competition in coral dwelling damselfishes. Ecology, 95 (11). pp. 3056-3067.

Baker, Ronald, Fujiwara, Masami, and Minello, Thomas J. (2014) Juvenile growth and mortality effects on white shrimp Litopenaeus setiferus population dynamics in the northern Gulf of Mexico. Fisheries Research, 155. pp. 74-82.

Brunnschweiler, Juerg M., Abrantes, Kátya G., and Barnett, Adam (2014) Long-term changes in species composition and relative abundances of sharks at a provisioning site. PLoS ONE, 9 (1). e86682. pp. 1-10.

Bunt, C.M., and Kingsford, M.J. (2014) Movement, habitat utilization and behaviour of coral trout Plectropomus leopardus during and after the reproductive period on the southern Great Barrier Reef. Marine Ecology Progress Series, 496. pp. 33-45.

Brandl, Simon J., and Bellwood, David R. (2014) Pair-­formation in coral reef fishes: an ecological perspective. Oceanography and Marine Biology: an annual review, 52. pp. 1-80.

Barnett, Leonie J., Miller, Terrence L., and Cribb, Thomas H. (2014) A review of the currently recognised opecoelid cercariae, including the identification and emergence ecology of Cercaria capricornia XII (Digenea: Opecoelidae) from Nassarius olivaceus (Gastropoda: Nassariidae) in Central Queensland, Australia. Parasitology International, 63 (5). pp. 670-682.

Brazenor, Alexander K., and Hutson, Kate S. (2013) Effect of temperature and salinity on egg hatching and description of the life cycle of Lernanthropus latis (Copepoda: Lernanthropidae) infecting barramundi, Lates calcarifer. Parasitology International, 62 (5). pp. 437-447.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2013) Strong intraspecific competition and habitat selectivity influence abundance of a coral-dwelling damselfish. Journal of Experimental Marine Biology and Ecology, 448. pp. 85-92.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Within-colony feeding selectivity by a corallivorous reef fish: foraging to maximize reward? Ecology and Evolution, 3 (12). pp. 4109-4118.

Botté, Emmanuelle S., Smith-Keune, Carolyn, and Jerry, Dean R. (2013) Temperature: a prolonged confounding factor on cholinesterase activity in the tropical reef fish Acanthochromis polyacanthus. Aquatic Toxicology, 140-141. pp. 337-339.

Boaden, A.E., and Kingsford, M.J. (2013) Distributions and habitat associations of the bridled monocle bream Scolopsis bilineatus (Nemipteridae): a demographic approach. Journal of Fish Biology, 83 (3). pp. 618-641.

Brooker, R.M., Munday, P.L., Mcleod, I.M., and Jones, G.P. (2013) Habitat preferences of a corallivorous reef fish: predation risk versus food quality. Coral Reefs, 32 (3). pp. 613-622.

Baker, Ronald, Fry, Brian, Rozas, Lawrence P., and Minello, Thomas J. (2013) Hydrodynamic regulation of salt marsh contributions to aquatic food webs. Marine Ecology Progress Series, 490. pp. 37-52.

Brandl, S.J., and Bellwood, D.R. (2013) Morphology, sociality, and ecology: can morphology predict pairing behavior in coral reef fishes? Coral Reefs, 32 (3). pp. 835-846.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2013) Heterospecific aggression and dominance in a guild of coral-feeding fishes: the roles of dietary ecology and phylogeny. American Naturalist, 182 (2). pp. 157-168.

Bourne, David G., van der Zee, Marc J.J., Botté, Emmanuelle S., and Sato, Yui (2013) Sulfur-oxidizing bacterial populations within cyanobacterial dominated coral disease lesions. Environmental Microbiology Reports, 5 (4). pp. 518-524.

Bott, Nathan J., Miller, Terrence L., and Cribb, Thomas H. (2013) Bucephalidae (Platyhelminthes: Digenea) of Plectropomus (Serranidae: Epinephelinae) in the tropical Pacific. Parasitology Research, 112 (7). pp. 2561-2584.

Brandl, S.J., and Bellwood, D.R. (2013) Pair formation in the herbivorous rabbitfish Siganus doliatus. Journal of Fish Biology, 82 (6). pp. 2031-2044.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Prey selectivity affects reproductive success of a corallivorous reef fish. Oecologia, 172 (2). pp. 409-416.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Sutton, Stephen G., and Begg, Gavin A. (2013) The role of subsistence fishing in the hybrid economy of an indigenous community. Marine Policy, 37. pp. 183-191.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Begg, Gavin A., and Sutton, Stephen G. (2013) Quantifying changes in the subsistence reef fishery of indigenous communities in Torres Strait, Australia. Fisheries Research, 137. pp. 50-58.

Ban, S.S., Graham, N.A.J., and Connolly, S.R. (2013) Relationships between temperature, bleaching and white syndrome on the Great Barrier Reef. Coral Reefs, 32 (1). pp. 1-12.

Bloecher, Nina, de Nys, Rocky, Poole, Andrew J., and Guenther, Jana (2013) The fouling hydroid Ectopleura larynx: a lack of effect of next generation antifouling technologies. Biofouling, 29 (3). pp. 237-246.

Bode, Michael, Connolly, Sean R., and Pandolfi, John M. (2012) Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist, 180 (5). pp. 577-588.

Bellwood, David R., Baird, Andrew H., Depczynski, Martial, González-Cabello, Alonso, Hoey, Andrew S., Lefevre, Carine D., and Tanner, Jennifer K. (2012) Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia, 170 (2). 1- 7.

Boaden, A.E., and Kingsford, M.J. (2012) Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3). pp. 871-883.

Berkstrom, Charlotte, Jones, Geoffrey P., McCormick, Mark I., and Srinivasan, Maya (2012) Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology Progress Series, 461. pp. 151-163.

Ballagh, Aaron C., Welch, David J., Newman, Stephen J., Allsop, Quentin, and Stapley, Jason M. (2012) Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics. Fisheries Research, 121-122. pp. 63-72.

Buston, Peter M., Jones, Geoffrey P., Planes, Serge, and Thorrold, Simon R. (2012) Probability of successful larval dispersal declines fivefold over 1 km in a coral reef fish. Proceedings of the Royal Society of London B: Biological Sciences, 279 (1735). pp. 1883-1888.

Berumen, M.L., Trip, E.D.L., Pratchett, M.S., and Choat, J.H. (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177.

Bonaldo, R.M., Welsh, J.Q., and Bellwood, D.R. (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95.

Bird, Michael I., Wurster, Christopher M., de Paula Silva, Pedro H., Paul, Nicholas A., and de Nys, Rocky (2012) Algal biochar: effects and applications. GCB Bioenergy, 4 (1). pp. 61-69.

Blowes, Shane A., and Connolly, Sean R. (2012) Risk spreading, connectivity, and optimal reserve spacing. Ecological Applications, 22 (1). pp. 311-321.

Beeden, Roger, Maynard, Jeffrey A., Marshall, Paul A., Heron, Scott F., and Willis, Bette L. (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13.

Barnes, Lachlan, Bellwood, David R., Sheaves, Marcus, and Tanner, Jennifer K. (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220.

Bellwood, David R., Renema, Willem, and Rosen, Brian R. (2012) Biodiversity hotspots, evolution and coral reef biogeography: a review. In: Gower, David J., Johnson, Kenneth G., Richardson, James E., Rosen, Brian R., Rüber, Lukas, and Williams, Suzanne T., (eds.) Biotic Evolution and Environmental Change in Southeast Asia. The Systematics Association Special Volume Series, 82 . Cambridge University Press, New York, USA, pp. 216-245.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Botté, E.S., Jerry, D.R., King, S. Codi, Smith-Keune, C., and Negri, A.P. (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393.

Barbosa, Miguel, Connolly, Sean R., Hisano, Mizue, Dornelas, Maria, and Magurran, Anne E. (2012) Fitness consequences of female multiple mating: a direct test of indirect benefits. BMC Evolutionary Biology, 12. 185. pp. 1-11.

Briffa, Mark, de la Haye, Kate, and Munday, Philip L. (2012) High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Marine Pollution Bulletin, 64 (8). pp. 1519-1528.

Bellwood, David R., Hoey, Andrew S., and Hughes, Terence P. (2012) Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1733). pp. 1621-1629.

Bosiger, Yoland J., Lonnstedt, Oona M., McCormick, Mark I., and Ferrari, Maud C.O. (2012) Learning temporal patterns of risk in a predator-diverse environment. PLoS ONE, 7 (4). e34535. pp. 1-7.

Barnett, Adam, Abrantes, Kátya, Seymour, Jamie, and Fitzpatrick, Richard (2012) Residency and spatial use by reef sharks of an isolated seamount and its implications for conservation. PLoS One, 7 (5). pp. 1-10.

Brooker, R.M., Munday, P.L., and Jones, G.P. (2011) Coral obligate filefish masquerades as branching coral. Coral Reefs, 30 (3). p. 803.

Broderick, D., Ovenden, J.R., Buckworth, R.C., Newman, S.J., Lester, R.J.G., and Welch, D.J. (2011) Genetic population structure of grey mackerel Scomberomorus semifasciatus in northern Australia. Journal of Fish Biology, 79 (3). pp. 633-661.

Bay, Line Kolind, Cumbo, Vivian Ruth, Abrego, David, Kool, Johnathan Travis, Ainsworth, Tracy Danielle, and Willis, Bette Lynn (2011) Infection dynamics vary between Symbiodinium types and cell surface treatments during establishment of endosymbiosis with coral larvae. Diversity, 3 (3). pp. 356-374.

Beukers-Stewart, B.D., Beukers-Stewart, J.S, and Jones, G.P. (2011) Behavioural and developmental responses of predatory coral reef fish to variation in the abundance of prey. Coral Reefs, 30 (3). pp. 855-864.

Bellwood, D.R., and Choat, J.H. (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554.

Bonaldo, R.M., and Bellwood, D.R. (2011) Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia. Coral Reefs, 30 (2). pp. 381-390.

Beattie, Andrew J., Hay, Mark, Magnusson, Bill, de Nys, Rocky, Smeathers, James, and Vincent, Julian F.V. (2011) Ecology and bioprospecting. Austral Ecology, 36 (3). pp. 341-356.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Bennett, S., and Bellwood, D.R. (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252.

Bonaldo, R.M., and Bellwood, D.R. (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs, 30 (1). pp. 259-269.

Bannister, Raymond, Hoogenboom, Mia, Anthony, Kenneth R. N., Battershill, Chris, Whalan, Stephen, Webster, Nicole, and De Nys, Rocky (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95-100.

Bonaldo, R.M., Krajewski, P.J., and Bellwood, D.R. (2011) Relative impact of parrotfish grazing scars on massive Porites corals at Lizard Island, Great Barrier Reef. Marine Ecology Progress Series, 423. pp. 223-233.

Bird, Michael I., Wurster, Christopher M., de Paula Silva, Pedro H., Bass, Adrian M., and de Nys, Rocky (2011) Algal biochar: production and properties. Bioresource Technology, 102 (2). 1886- 1891.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Ballagh, D.A., Pankhurst, P.M., and Fielder, D.S. (2011) Embryonic development of mulloway, Argyrosomus japonicus, and egg surface disinfection using ozone. Aquaculture, 318 (3-4). pp. 475-478.

Ballagh, Aaron C., Welch, David, Williams, Ashley J., Mapleston, Amos, Tobin, Andrew, and Marton, Nicholas (2011) Integrating methods for determining length-at-age to improve growth estimates for two large scombrids. Fishery Bulletin, 109 (1). pp. 90-100.

Berumen, M. L, Walsh, H.J., Raventos, N., Planes, S., Jones, G.P., Starczak, V., and Thorrold, S.R. (2010) Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs, 29 (4). pp. 883-891.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Booth, Mark A., Allan, Geoff L., and Pirozzi, Igor (2010) Estimation of digestible protein and energy requirements of yellowtail kingfish Seriola lalandi using a factorial approach. Aquaculture, 307 (3-4). pp. 247-259.

Ballagh, Debra A., Fielder, D. Stewart, and Pankhurst, Patricia M. (2010) Weaning requirements of larval mulloway, Argyrosomus japonicus. Aquaculture Research, 41 (10). e493-e504.

Booth, Mark A., Pirozzi, Igor, Allan, Geoff L., and Fielder, D. Stewart (2010) Aquafin CRC Project 1B5: Feed Technology for Temperate f\Fish Species. Volume 2: Diet Development. Report. Industry and Investment NSW, NSW, Australia.

Bennett, S., Vergés, A., and Bellwood, D.R. (2010) Branching coral as a macroalgal refuge in a marginal coral reef system. Coral Reefs, 29 (2). pp. 471-480.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2010) Demographic variability and long-term change in a coral reef sponge along a cross-shelf gradient of the Great Barrier Reef. Marine and Freshwater Research, 61 (4). pp. 389-396.

Brown, I., Sumpton, W., McLennan, M., Mayer, D., Campbell, M., Kirkwood, J., Butcher, A., Halliday, I., Mapleston, A., Welch, D., Begg, G.A., and Sawynok, B. (2010) An improved technique for estimating short-term survival of released line-caught fish, and an application comparing barotrauma-relief methods in red emperor (Lutjanus sebae Cuvier 1816). Journal of Experimental Marine Biology and Ecology, 385 (1-2). pp. 1-7.

Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N., and Van Herwerden, L. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23 (2). pp. 335-349.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2010) Deployment of wireless sensor network to study oceanography of coral reefs. International Journal on Advances in Networks and Services, 3 (1 and 2). pp. 92-102.

Bell, Johann, Batty, Mike, Ganachaud, Alex, Gehrke, Peter, Hobday, Alistair, Hoegh-Guldberg, Ove, Johnson, Johanna, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice, Pickering, Tim, Pratchett, Morgan, Sheaves, Marcus, and Waycott, Michelle (2010) Preliminary assessment of the effects of climate change on fisheries and aquaculture in the Pacific. In: Gillett, Robert, (ed.) Fisheries in the Economies of the Pacific Island Countries and Territories. Pacific Studies Series . Asian Development Bank, Manila, Philippines, pp. 451-469.

Baker, Ron, and Sheaves, Marcus (2009) Overlooked small and juvenile piscivores dominate shallow-water estuarine "refuges" in tropical Australia. Estuarine, Coastal and Shelf Science , 85 (4). pp. 618-626.

Baird, Andrew H., Guest, James R., and Willis, Bette L. (2009) Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annual Review of Ecology, Evolution, and Systematics, 40. pp. 551-571.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Bellwood, David R., and Meyer, Christopher P. (2009) Endemism and evolution in the Coral Triangle: a call for clarity. Journal of Biogeography, 36 (10). pp. 2010-2012.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Brierley, Andrew S., and Kingsford, Michael J. (2009) Impacts of climate change on marine organisms and ecosystems. Current Biology, 19 (14). R602-R614.

Botsford, L.W., White, J.W., Coffroth, M-A., Paris, C.B., Planes, S., Shearer, T.L., Thorrold, S.R., and Jones, G.P. (2009) Connectivity and resilience of coral reef metapopulations in marine protected areas: matching empirical efforts to predictive needs. Coral Reefs, 28 (2). pp. 327-337.

Bonaldo, Roberta Martini, and Bellwood, David R. (2009) Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

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Dubuc, Alexia, Baker, Ronald, Marchand, Cyril, Waltham, Nathan J., and Sheaves, Marcus (2019) Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat. Biogeosciences, 16 (20). pp. 3959-3976.

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Dubuc, Alexia, Waltham, Nathan J., Baker, Ronald, Marchand, Cyril, and Sheaves, Marcus (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4). e0207168.

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Diedrich, Amy, Benham, Claudia, Pandihau, Lina, and Sheaves, Marcus (2019) Social capital plays a central role in transitions to sportfishing tourism in small-scale fishing communities in Papua New Guinea. Ambio, 48 (4). pp. 385-396.

DeMartini, Edward E., Andrews, Allen H., Howard, Kathrine G., Taylor, Brett M., Lou, Dong-Chun, and Donovan, Mary K. (2018) Comparative growth, age at maturity and sex change, and longevity of hawaiian parrotfishes, with bomb radiocarbon validation. Canadian Journal of Fisheries and Aquatic Sciences, 75 (4). pp. 580-589.

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D'Lima, Coralie, Everingham, Yvette, Diedrich, Amy, Mustika, Putu L., Hamann, Mark, and Marsh, Helene (2018) Using multiple indicators to evaluate the sustainability of dolphin-based wildlife tourism in rural India. Journal of Sustainable Tourism, 26 (10). pp. 1687-1707.

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Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2017) The nutritional value of live and concentrated micro-algae for early juveniles of sandfish, Holothuria scabra. Aquaculture, 473. pp. 97-104.

D'Alberto, Brooke M., Chin, Andrew, Smart, Jonathan J., Baje, Leontine, White, William, and Simpfendorfer, Colin A. (2017) Age, growth and maturity of oceanic whitetip shark (Carcharhinus longimanus) from Papua New Guinea. Marine and Freshwater Research, 68 (6). pp. 1118-1129.

Dubuc, Alexia, Waltham, Nathan, Malerba, Martino, and Sheaves, Marcus (2017) Extreme dissolved oxygen variability in urbanised tropical wetlands: the need for detailed monitoring to protect nursery ground values. Estuarine, Coastal and Shelf Science, 198 (Part A). pp. 163-171.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2016) Development of hyaline spheres in late auriculariae of sandfish, Holothuria scabra: is it a reliable indicator of subsequent performance? Aquaculture, 465. pp. 144-151.

Delghandi, M., Goddard, S., Jerry, D.R., Dao, H.T., Al Hinai, M.S.N., Al-Amry, W., and Al-Marzouqi, A. (2016) Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species. Genetics and Molecular Research, 15 (2). pp. 1-5.

Delghandi, Madjid, Afzal, Hasifa, Al Hinai, Manal Saif Nasser, Al-Breiki, Rafaida Dhuhai Gharib, Jerry, Dean R., and Dao, Hoc Tan (2016) Novel polymorphic microsatellite markers for Panulirus ornatus and their cross-species primer amplification in Panulirus homarus. Animal Biotechnology, 27 (4). pp. 310-314.

D'Lima, Coralie, Welters, Riccardo, Hamann, Mark, and Marsh, Helene (2016) Using regional geographic scale substitution to value coastal wildlife tourism: implications for stakeholders, conservation and management. Ocean & Coastal Management, 128. pp. 52-60.

Delghandi, M., Goddard, S., Jerry, D.R., Dao, H.T., Afzal, H., and Al-Jardani, S.S. (2015) Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus). Genetics and Molecular Research, 14 (4). 5944. pp. 19066-19070.

Donelson, Jennifer M. (2015) Development in a warm future ocean may enhance performance in some species. Journal of Experimental Marine Biology and Ecology, 472. pp. 119-125.

Dutra, Leo X.C., Bustamante, Rodrigo H., Sporne, Ilva, van Putten, Ingrid, Dichmont, Catherine M., Ligtermoet, Emma, Sheaves, Marcus, and Deng, Roy A. (2015) Organizational drivers that strengthen adaptive capacity in the coastal zone of Australia. Ocean & Coastal Management, 109. pp. 64-76.

Drew, M., White, W.T., Dharmadi, Harry, A.V., and Huveneers, C. (2015) Age, growth and maturity of the pelagic thresher Alopias pelagicusand the scalloped hammerhead Sphyrna lewini. Journal of Fish Biology, 86 (1). pp. 333-354.

Dudgeon, Christine L., Pollock, Kenneth H., Braccini, J. Matias, Semmens, Jayson M., and Barnett, Adam (2015) Integrating acoustic telemetry into mark-recapture models to improve the precision of apparent survival and abundance estimates. Oecologia, 178 (3). pp. 761-772.

Davy, Lauren E., Simpfendorfer, Colin A., and Heupel, Michelle R. (2015) Movement patterns and habitat use of juvenile mangrove whiprays (Himantura granulata). Marine and Freshwater Research, 66 (6). pp. 481-492.

Dao, Hoc Tan, Smith-Keune, Carolyn, Wolanski, Eric, Jones, Clive M., and Jerry, Dean R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the south-east Asian archipelago. PLoS ONE, 10 (5). e0124568. pp. 1-19.

Donelson, Jennifer M., and Munday, Philip L. (2015) Transgenerational plasticity mitigates the impact of global warming to offspring sex ratios. Global Change Biology, 21 (8). pp. 2954-2962.

Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2015) Whole-genome shotgun sequence assembly enables rapid gene characterization in the tropical fish barramundi, Lates calcarifer. Animal Genetics, 46 (4). pp. 468-469.

Do Huu, Hoang, and Jones, Clive M. (2014) Effects of dietary mannan oligosaccharide supplementation on juvenile spiny lobster Panulirus homarus (Palinuridae). Aquaculture, 432. pp. 258-264.

Donelson, Jennifer M., McCormick, Mark I., Booth, David J., and Munday, Philip L. (2014) Reproductive acclimation to increased water temperature in a tropical reef fish. PLoS ONE, 9 (5). e97223. pp. 1-9.

D'agata, Stéphanie, Mouillot, David, Kulbicki, Michel, Andréföuet, Serge, Bellwood, David R., Cinner, Joshua E., Cowman, Peter F., Kronen, Mecki, Pinca, Silvia, and Vigliola, Laurent (2014) Human-mediated loss of phylogenetic and functional diversity in coral reef fishes. Current Biology, 24 (5). pp. 555-560.

Domenici, Paolo, Allan, Bridie J.M., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip L. (2014) Shifting from right to left: the combined effect of elevated CO2 and temperature on behavioural lateralization in a coral reef fish. PLoS One, 9 (1). e87969. pp. 1-6.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., and Thorrold, Simon R. (2014) Experimental evaluation of imprinting and the role innate preference plays in habitat selection in a coral reef fish. Oecologia, 174 (1). pp. 99-107.

Davis, Ben, Mattone, Carlo, and Sheaves, Marcus (2014) Bottom-up control regulates patterns of fish connectivity and assemblage structure in coastal wetlands. Marine Ecology Progress Series, 500. pp. 175-186.

Dichmont, Catherine M., Dutra, Leo X.C., van Putten, Ingrid, Deng, Roy, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Pascual, Richardo, Warne, Michael, Quinn, Ross, Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Waycott, Michelle, Collier, Catherine, Dambacher, Jeffrey M., Playford, Julia, Harm, Rachel, Gribble, Neil, and Pitcher, Roland (2014) Design and implementation of management strategy evaluation for the Great Barrier Reef inshore (MSE-GBR). Report. Reef and Rainforest Research Centre, Cairns, Australia.

De Jesus-Ayson, Evelyn Grace, Ayson, Felix G., and Thepot, Valentin (2014) Early development and seed production of Asian seabass, Lates calcarifer. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 16-30.

Domingos, Jose A., Smith-Keune, Carolyn, Harrison, Paul, and Jerry, Dean R. (2014) Early prediction of long-term family growth performance based on cellular processes: a tool to expedite the establishment of superior foundation broodstock in breeding programs. Aquaculture, 428-429. pp. 88-96.

Domingos, Jose A., Smith-Keune, Carolyn, and Jerry, Dean R. (2014) Fate of genetic diversity within and between generations and implications for DNA parentage analysis in selective breeding of mass spawners: a case study of commercially farmed barramundi, Lates calcarifer. Aquaculture, 424-425. pp. 174-182.

Dinh Hoai, Truong , and Hutson, Kate S. (2014) Reproductive strategies of the insidious fish ectoparasite, Neobenedenia sp. (Capsalidae: Monogenea). PLoS ONE, 9 (9). e108801. pp. 1-7.

Davis, Ben, Baker, Ronald, and Sheaves, Marcus (2014) Seascape and metacommunity processes regulate fish assemblage structure in coastal wetlands. Marine Ecology Progress Series, 500. pp. 187-202.

de Paula Silva, Pedro H., Paul, Nicholas A., de Nys, Rocky, and Mata, Leonardo (2013) Enhanced production of green tide algal biomass through additional carbon supply. PLoS ONE, 8 (12). e81164. pp. 1-7.

Dubois, Baptiste, Tomkins, Nigel W., Kinley, Robert D., Bai, Mei, Seymour, Scott, Paul, Nicholas A., and de Nys, Rocky (2013) Effect of tropical algae as additives on rumen in vitro gas production and fermentation characteristics. American Journal of Plant Sciences, 4 (12B). pp. 34-43.

Duchene, David, Klanten, Selma O., Munday, Philip L., Herler, Jürgen, and van Herwerden, Lynne (2013) Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals. Molecular Phylogenetics and Evolution, 69 (1). pp. 123-132.

Domingos, Jose A., Smith-Keune, Carolyn, Robinson, Nicholas, Loughnan, Shannon, Harrison, Paul, and Jerry, Dean R. (2013) Heritability of harvest growth traits and genotype–environment interactions in barramundi, Lates calcarifer (Bloch). Aquaculture, 402-403. pp. 66-75.

DiBattista, Joseph D., Berumen, Michael L., Gaither, Michelle R., Rocha, Luiz A., Eble, Jeff A., Choat, J. Howard, Craig, Matthew, Skillings, Derek J., and Bowen, Brian W. (2013) After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean. Journal of Biogeography, 40 (6). pp. 1170-1181.

Dao, Hoc Tan, Todd, Erica V., and Jerry, Dean R. (2013) Characterization of polymorphic microsatellite loci for the spiny lobster Panulirus spp. and their utility to be applied to other Panulirus lobsters. Conservation Genetics Resources, 5 (1). pp. 43-46.

Donelson, Jennifer, Munday, Philip, McCormick, Mark, and Pitcher, C.R. (2012) Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change, 2. pp. 30-32.

de Santis, Christian, B. Gomes, Giana, and Jerry, Dean R. (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107.

de Paula Silva, Pedro H., De Nys, Rocky, and Paul, Nicholas A. (2012) Seasonal growth dynamics and resilience of the green tide alga Cladophora coelothrix in high-nutrient tropical aquaculture. Aquaculture Environment Interactions , 2 (3). pp. 253-266.

Dixson, Danielle L., Pratchett, Morgan S., and Munday, Philip L. (2012) Reef fishes innately distinguish predators based on olfactory cues associated with recent prey items rather than individual species. Animal Behaviour, 84 (1). pp. 45-51.

Domingos, J.A., Fromm, P., Smith-Keune, C., and Jerry, D.R. (2012) A robust flow-cytometric protocol for assessing growth rate of hatchery-reared barramundi Lates calcarifer larvae. Journal of Fish Biology, 80 (6). pp. 2253-2266.

Dixson, D.L. (2012) Predation risk assessment by larval reef fishes during settlement-site selection. Coral Reefs, 31 (1). pp. 255-261.

Domenici, Paolo, Allan, Bridie, McCormick, Mark I., and Munday, Philip L. (2012) Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters, 8 (1). pp. 78-81.

Devine, Brynn M., Munday, Philip L., and Jones, Geoffrey P. (2012) Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia, 168 (1). pp. 269-276.

Donelson, J.M., Munday, P.L., and McCormick, M.I. (2012) Climate change may affect fish through an interaction of parental and juvenile environments. Coral Reefs, 31 (3). pp. 753-762.

Das, Sarat Kumar, and Sivakugan, N. (2012) Discussion of "Neural network modeling of resilient modulus using routine subgrade soil properties" by Musharraf Zaman, Pranshoo Solanki, Ali Ebrahimi, and Luther White. International Journal of Geomechanics, 12 (4). pp. 517-518.

Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium. 21A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Devine, B.M., Munday, P.L., and Jones, G.P. (2012) Rising CO2 concentrations affect settlement behaviour of larval damselfishes. Coral Reefs, 31 (1). pp. 229-238.

Donelson, Jennifer M., and Munday, Philip L. (2012) Thermal sensitivity does not determine acclimation capacity for a tropical reef fish. Journal of Animal Ecology, 81 (5). pp. 1126-1131.

Dixson, D.L., Munday, P.L., Pratchett, M., and Jones, G.P. (2011) Ontogenetic changes in responses to settlement cues by anemonefish. Coral Reefs, 30 (4). pp. 903-910.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Pratchett, Morgan S., Srinivasan, Maya, Planes, Serge, and Thorrold, Simon R. (2011) Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands. Ecology and Evolution, 1 (4). pp. 586-595.

De Santis, Christian, Wade, Nicholas M., Jerry, Dean R., Preston, Nigel P., Glencross, Brett D., and Sellars, Melony J. (2011) Growing backwards: an inverted role for the shrimp ortholog of vertebrate myostatin and GDF11. Journal of Experimental Biology, 214 (16). pp. 2671-2677.

Donelson, Jennifer M., Munday, Philip, Mccormick, Mark I., and Nilsson, Göran E. (2011) Acclimation to predicted ocean warming through developmental plasticity in a tropical reef fish. Global Change Biology, 17 (4). pp. 1712-1719.

De Santis, Christian, Smith-Keune, Carolyn, and Jerry, Dean R. (2011) Normalizing RT-qPCR data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the Finfish Lates calcarifer. Marine Biotechnology, 13 (2). pp. 170-180.

Dickens, Luke C., Goatley, Christopher H.R., Tanner, Jennifer K., and Bellwood, David R. (2011) Quantifying relative diver effects in underwater visual censuses. PLoS One, 6 (4). e18965. pp. 1-8.

De Santis, C., and Jerry, D.R. (2011) Differential tissue-regulation of myostatin genes in the teleost fish Lates calcarifer in response to fasting. Evidence for functional differentiation. Molecular and Cellular Endocrinology, 335 (2). 158-165 .

Done, T.J., DeVantier, L.M., Turak, E., Fisk, D.A., Wakeford, M., and van Woesik, R. (2010) Coral growth on three reefs: development of recovery benchmarks using a space for time approach. Coral Reefs, 29 (4). pp. 815-833.

Dixson, Danielle L., Munday, Philip L., and Jones, Geoffrey P. (2010) Ocean acidification disrupts the innate ability of fish to detect predator olfactory cues. Ecology Letters, 13 (1). pp. 68-75.

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