B

Bridge, Tom C.L., Baird, Andrew H., Pandolfi, John M., McWilliam, Michael J., and Zapalski, Mikolaj K. (2022) Functional consequences of Palaeozoic reef collapse. Scientific Reports, 12 (1). 1386.

Bell, Katherine L.C., Chow, Jennifer Szlosek, Hope, Alexis, Quinzin, Maud C., Cantner, Kat A., Amon, Diva J., Cramp, Jessica E., Rotjan, Randi D., Kamalu, Lehua, de Vos, Asha, Talma, Sheena, Buglass, Salome, Wade, Veta, Filander, Zoleka, Noyes, Kaitlin, Lynch, Miriam, Knight, Ashley, Lourenço, Nuno, Girguis, Peter R., de Sousa, João Borges, Blake, Chris, Kennedy, Brian R.C., Noyes, Timothy J., and McClain, Craig R. (2022) Low-Cost, Deep-Sea Imaging and Analysis Tools for Deep-Sea Exploration: A Collaborative Design Study. Frontiers in Marine Science, 9. 873700.

Benthuysen, Jessica A., Emslie, Michael J., Currey-Randall, Leanne M., Cheal, Alistair J., and Heupel, Michelle R. (2022) Oceanographic influences on reef fish assemblages along the Great Barrier Reef. Progress in Oceanography, 208. 102901.

C

Critchell, Kay, and Lambrechts, Jonathan (2016) Modelling accumulation of marine plastics in the coastal zone; what are the dominant physical processes? Estuarine, Coastal and Shelf Science , 171. pp. 111-122.

D

Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.

Duce, S., Vila-Concejo, A., McCarroll, R.J., Yiu, B., Perris, L.A., and Webster, J.M. (2022) Field measurements show rough fore reefs with spurs and grooves can dissipate more wave energy than the reef crest. Geomorphology, 413. 108365.

David, Marine, Bailly-Comte, Vincent, Munaron, Dominique, Fiandrino, Annie, and Stieglitz, Thomas C. (2019) Groundwater discharge to coastal streams – a significant pathway for nitrogen inputs to a hypertrophic Mediterranean coastal lagoon. Science of the Total Environment, 677. pp. 142-155.

G

Galbraith, Gemma F., Cresswell, Benjamin J., McCormick, Mark, Bridge, Thomas C., and Jones, Geoffrey P. (2022) Contrasting hydrodynamic regimes of submerged pinnacle and emergent coral reefs. PLoS ONE, 17 (8). e0273092.

Galbraith, Gemma Frances (2021) The ecology of fishes on submerged pinnacle coral reefs. PhD thesis, James Cook University.

George, Anita Mary, Brodie, Jon, Daniell, James, Capper, Angela, and Jonker, Michelle (2018) Can sponge morphologies act as environmental proxies to biophysical factors in the Great Barrier Reef, Australia? Ecological Indicators, 93. pp. 1152-1162.

H

Heron, Mal (2018) HF ocean radars in ship navigation. In: Proceedings of the IEEE 27th International Symposium on Industrial Electronics. pp. 925-928. From: ISIE 2018: IEEE 27th International Symposium on Industrial Electronics, 13-15 June 2018, Cairns, QLD, Australia.

Heron, M. L. (2017) Can HF ocean radar provide vertical current profile estimates? In: Proceedings of the 2017 IEEE Underwater Technology Conference. From: 2017 IEEE Underwater Technology Conference, 22-24 February 2017, Busan, South Korea.

Heron, Mal, Gomez, Roberto, Weber, Bernd, Dzvonkovskaya, Anna, Helzel, Thomas, Thomas, Nicolas, and Wyatt, Lucy (2016) Application of HF radar in hazard management. International Journal of Antennas and Propagation, 2016. 4725407. pp. 1-14.

J

Johnson, J.A., Perry, C.T., Smithers, S.G., Morgan, K.M., Santodomingo, N., and Johnson, K.G. (2017) Palaeoecological records of coral community development on a turbid, nearshore reef complex: baselines for assessing ecological change. Coral Reefs, 36 (3). pp. 685-700.

K

Kingsford, Michael J., and Wolanski, Eric (2024) The Emergence of Biophysical Sciences for the Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 3-8.

L

Lachs, Liam, Bythell, John C., East, Holly K., Edwards, Alasdair J., Mumby, Peter J., Skirving, William J., Spady, Blake L., and Guest, James R. (2021) Fine-Tuning Heat Stress Algorithms to Optimise Global Predictions of Mass Coral Bleaching. Remote Sensing, 13 (2677).

M

Mortlock, Thomas, Metters, Daryl, Soderholm, Joshua, Maher, John, Lee, Serena B., Boughton, Geoffrey, Stewart, Nigel, Zavadil, Elisa, and Goodwin, Ian D. (2018) Extreme water levels, waves and coastal impacts during a severe tropical cyclone in northeastern Australia: a case study for cross-sector data sharing. Natural Hazards and Earth System Sciences, 18 (9). pp. 2603-2623.

Mergvelashvili, N., Andrewartha, J., Baird, M., Herzfeld, M., Jones, E., Mongin, M., Rizwi, F., Robson, B.J., Skerratt, J., Wild-Allen, K., and Steven, Andrew (2018) Simulated fate of catchment-derived sediment on the Great Barrier Reef shelf. Marine Pollution Bulletin, 135. pp. 954-962.

Mantovanelli, Alessandra, Keating, Shane, Wyatt, Lucy R., Roughan, Moninya, and Schaeffer, Amandine (2017) Lagrangian and Eulerian characterization of two counter-rotating submesoscale eddies in a western boundary current. Journal of Geophysical Research: Oceans, 122 (6). pp. 4902-4921.

Morgan, Kyle M., Perry, Chris T., Smithers, Scott G., Johnson, Jamie A., and Daniell, James J. (2016) Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings. Scientific Reports, 6. 29616. pp. 1-10.

Morgan, Kyle, Perry, Chris, Smithers, Scott, Johnson, Jamie, and Daniell, James (2016) Exploring the hidden shallows: extensive reef development and resilience within the turbid nearshore Great Barrier Reef. Geophysical Research Abstracts, 18. 8699.

P

Patricio-Valerio, Larissa, Schroeder, Thomas, Devlin, Michelle J., Yi, Qin, and Smithers, Scott (2023) Meteorological Satellite Observations Reveal Diurnal Exceedance of Water Quality Guideline Thresholds in the Coastal Great Barrier Reef. Remote Sensing, 15 (9). 2335.

Panero, Marta, Galbraith, G.F., Srinivasan, M., and Jones, G.P. (2023) Roles of depth, current speed, and benthic cover in shaping gorgonian assemblages at the Palm Islands (Great Barrier Reef). Coral Reefs, 42. pp. 1045-1057.

Paris, Claire Beatrix, and Wolanski, Eric (2020) The Importance of Behavior in the Recruitment of Marine Fauna and Flora. Frontiers Media SA, Lausanne, Switzerland.

Perry, C.T., Kench, P.S., Smithers, S.G., Riegl, B.R., Gulliver, P., and Daniells, J.J. (2017) Terrigenous sediment-dominated reef platform infilling: an unexpected precursor to reef island formation and a test of the reef platform size island age model in the Pacific. Coral Reefs, 36 (3). pp. 1013-1021.

R

Rodellas, Valenti, Cook, Peter G., McCallum, James, Andrisoa, Aladin, Meule, Samuel, and Stieglitz, Thomas C. (2020) Temporal variations in porewater fluxes to a coastal lagoon driven by wind waves and changes in lagoon water depths. Journal of Hydrology, 581. 124363.

Rodellas, Valentí, Garcia-Orellana, Jordi, Trezzi, Giada, Masqué, Pere, Stieglitz, Thomas C., Bokuniewicz, Henry, Cochran, J. Kirk, and Berdalet, Elisa (2017) Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Geochimica et Cosmochimica Acta, 196. pp. 58-73.

S

Spady, Blake, Skirving, William J., Liu, Gang, De La Cour, Jacqueline L., McDonald, Cathy J., and Manzello, Derek P. (2022) Unprecedented early-summer heat stress and forecast of coral bleaching on the Great Barrier Reef, 2021-2022. F1000Research, 11 (127).

Schlaefer, Jodie A., Tebbett, Sterling B., Bowden, Casey L., Collins, William P., Duce, Stephanie, Hemingson, Christopher R., Huertas, Victor, Mihalitsis, Michalis, Morais, Juliano, Morais, Renato A., Siqueira, Alexandre C., Streit, Robert P., Swan, Sam, Valenzuela, Jessica, and Bellwood, David R. (2022) A snapshot of sediment dynamics on an inshore coral reef. Marine Environmental Research, 181. 105763.

Salamena, Gerry Giliant, Whinney, James C., Heron, Scott F., and Ridd, Peter (2021) Internal tidal waves and deep-water renewal in a tropical fjord: lessons from Ambon Bay, eastern Indonesia. Estuarine, Coastal and Shelf Science, 253. 107291.

Silva, C.N.S., Macdonald, H.S., Hadfield, M.G., Cryer, M., and Gardner, J.P.A. (2019) Ocean currents predict fine-scale genetic structure and source-sink dynamics in a marine invertebrate coastal fishery. ICES Journal of Marine Science, 76 (4). fsy201. pp. 1007-1018.

Skirving, W.J., Heron, S.F., Marsh, B.L., Liu, G., De La Cour, J.L., Geiger, E.F., and Eakin, C.M. (2019) The relentless march of mass coral bleaching: a global perspective of changing heat stress. Coral Reefs, 38 (4). pp. 547-557.

Smithers, Scott, Hopley, David, and Mclean, Roger (2018) Holocene sea level on the Great Barrier Reef: reflections on four decades of debate and the legacy of the 1973 expedition to the northern great barrier reef. Atoll Research Bulletin, 2018 (619). pp. 79-103.

Shedrawi, George, Falter, James L., Friedman, Kim J., Lowe, Ryan J., Pratchett, Morgan S., Simpson, Christopher J., Speed, Conrad W., Wilson, Shaun K., and Zhang, Zhenlin (2017) Localised hydrodynamics influence vulnerability of coral communities to environmental disturbances. Coral Reefs, 36 (3). pp. 861-872.

Salamena, Gerry G., Martins, Flávio, and Ridd, Peter V. (2016) The density-driven circulation of the coastal hypersaline system of the Great Barrier Reef, Australia. Marine Pollution Bulletin, 105 (1). pp. 277-285.

T

Teodosio, Maria Alexandra Anica, Faria, Silvana, Baptista, Vânia, and Wolanski, Eric (2024) Applying Ecohydrology to Promote a Nature-Based Solution. In: UNSPECIFIED, (ed.) Scientific Innovations for Coastal Resource Management. IGI Global, Hershey PA, USA, pp. 199-228.

Tebbett, Sterling B., Schlaefer, Jodie A., Bowden, Casey L., Collins, William P., Hemingson, Christopher R., Ling, Scott D., Morais, Juliano, Morais, Renato A., Siqueira, Alexandre C., Streit, Robert P., Swan, Sam, and Bellwood, David R. (2023) Bio-physical determinants of sediment accumulation on an offshore coral reef: A snapshot study. Science of the Total Environment, 895. 165188.

Taniguchi, Makoto, Dulai, Henrietta, Burnett, Kimberly M., Santos, Isaac R., Sugimoto, Ryo, Stieglitz, Thomas, Kim, Guebuem, Moosdorf, Nils, and Burnett, William C. (2019) Submarine groundwater discharge: updates on its measurement techniques, geophysical drivers, magnitudes, and effects. Frontiers in Environmental Science, 7. 141.

Tamborski, Joseph, van Beek, Pieter, Rodellas, Valenti, Monnin, Christophe, Bergsma, Erwin, Stieglitz, Thomas, Heilbrun, Christina, Cochran, J Kirk, Charbonnier, Celine, Anschutz, Pierre, Bejannin, Simon, and Beck, Aaron (2019) Temporal variability of lagoon–sea water exchange and seawater circulation through a Mediterranean barrier beach. Limnology and Oceanography, 64 (5). pp. 2059-2080.

Thom, B.G., Eliot, I., Eliot, M., Harvey, N., Rissik, D., Sharples, C., Short, A.D., and Woodroffe, C. (2018) National sediment compartment framework for Australian coastal management. Ocean & Coastal Management, 154. pp. 103-120.

W

Wolanski, Eric, and Kingsford, Michael J. (2024) Great Barrier Reef Biophysics. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 438-451.

Wolanski, Eric, De Le Court, Miguel, Lambrechts, Jonathan, and Kingsford, Michael (2024) Mechanisms enabling the self-recruitment of coral and crown-of-thorns starfish larvae in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 309. 108976.

Wolanski, Eric, Zeidan, Bakenaz A., and Aly, A.I.M. (2024) The Nile River Basin ecohydrology system: Problems and solutions. In: UNSPECIFIED, (ed.) The Nile River System, Africa: Ecohydrology and Management from Catchment to Coast. Elsevier, Amsterdam, Netherlands, pp. 319-335.

Wolanski, Eric, and Kingsford, Michael J. (2024) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, FL, USA.

Wolanski, Eric, Kingsford, Michael J., Lambrechts, Jonathan, and Marmorino, George (2024) The Physical Oceanography of the Great Barrier Reef:. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 9-34.

Wenderlich, Michal Jan (2022) Shelf-edge stratigraphy of the central Great Barrier Reef. PhD thesis, James Cook University.

Wolanski, Eric, Richmond, Robert H., and Golbuu, Yimnang (2021) Oceanographic chaos and its role in larval self-recruitment and connectivity among fish populations in Micronesia. Estuarine, Coastal and Shelf Science, 259. 107461.

Wouthuyzen, Sam, Kusmanto, E., Fadli, M., Harsono, G., Salamena, G., Lekalette, J, and Syahailatua, A. (2020) Ocean color as a proxy to predict sea surface salinity in the Banda Sea. In: IOP Conference Series: Earth and Environmental Science (618) 012037. From: 2nd Maritime Science and Advanced Technology Conference, 7-8 August 2020, Makassar, Indonesia.

Wyatt, Lucy R. (2018) A comparison of scatterometer and HF radar wind direction measurements. Journal of Operational Oceanography, 11 (1). pp. 54-63.

Whinney, James, Jones, Ross, Duckworth, Alan, and Ridd, Peter (2017) Continuous in situ monitoring of sediment deposition in shallow benthic environments. Coral Reefs, 36. pp. 521-533.

Wilson, Laura J., Fulton, Christopher J., Hogg, Andrew McC., Joyce, Karen E., Radford, Ben T.M., and Fraser, Ceridwen I. (2016) Climate-driven changes to ocean circulation and their inferred impacts on marine dispersal patterns. Global Ecology and Biogeography , 25 (8). pp. 923-939.