B

Browne, Daniel J., Brady, Jamie L., Van Waardenberg, Ashley J., Loiseau, Claire, and Doolan, Denise L. (2020) An analytically and diagnostically sensitive RNA extraction and RT-qPCR protocol for peripheral blood mononuclear cells. Frontiers in Immunology, 11. 402.

Blake, Stephen J., Dougall, William C., Miles, John J., Teng, Michele W.L., and Smyth, Mark J. (2016) Molecular pathways: targeting CD96 and TIGIT for cancer immunotherapy. Clinical Cancer Research, 22 (21). pp. 5183-5188.

C

Cole, David K., Fuller, Anna, Dolton, Garry, Zervoudi, Efthalia, Legut, Mateusz, Miles, Kim, Blanchfield, Lori, Madura, Florian, Holland, Christopher J., Bulek, Anna M., Bridgeman, John S., Miles, John J., Schauenburg, Andrea J.A., Beck, Konrad, Evavold, Brian D., Rizkallah, Pierre J., and Sewell, Andrew K. (2017) Dual molecular mechanisms govern escape at immunodominant HLA A2-restricted HIV epitope. Frontiers in Immunology, 8. 1503.

Cole, David K., Van Den Berg, Hugo A., Lloyd, Angharad, Crowther, Michael D., Beck, Konrad, Ekeruche-Makinde, Julia, Miles, John J., Bulek, Anna M., Dolton, Garry, Schauenburg, Andrea J., Wall, Aaron, Fuller, Anna, Clement, Mathew, Laugel, Bruno, Rizkallah, Pierre J., Wooldridge, Linda, and Sewell, Andrew K. (2017) Structural mechanism underpinning cross-reactivity of a CD8(+) T-cell clone that recognizes a peptide derived from human telomerase reverse transcriptase. Journal of Biological Chemistry, 292 (3). pp. 802-813.

Cole, David K., Bulek, Anna M., Dolton, Garry, Schauenberg, Andrea J., Szomolay, Barbara, Rittase, William, Trimby, Andrew, Jothikumar, Prithiviraj, Fuller, Anna, Skowera, Ania, Rossjohn, Jamie, Zhu, Cheng, Miles, John J., Peakman, Mark, Wooldridge, Linda, Rizkallah, Pierre J., and Sewell, Andrew K. (2016) Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity. Journal of Clinical Investigation, 126 (6). pp. 2191-2204.

D

Deacy, Anthony M., Gan, Samuel Ken-En, and Derrick, Jeremy P. (2021) Superantigen recognition and interactions: functions, mechanisms and applications. Frontiers in Immunology, 12. 731845. pp. 3765-6781.

Dasari, Vijayendra, Schuessler, Andrea, Smith, Corey, Wong, Yide, Miles, John J., Smyth, Mark J., Ambalathingal, George, Francis, Ross, Campbell, Scott, Chambers, Daniel, and Khanna, Rajiv (2016) Prophylactic and therapeutic adenoviral vector-based multivirus-specific T-cell immunotherapy for transplant patients. Molecular Therapy: methods & clinical development, 3. 16058.

E

Ezechukwu, Henry C., Diya, Cornelius A., Egoh, Ifunanya J., Abiodun, Mayowa J., Grace, John-Ugwuanya A., Okoh, God'spower R., Adu, Kayode T., and Adegboye, Oyelola A. (2021) Lung microbiota dysbiosis and the implications of SARS-CoV-2 infection in pregnancy. Therapeutic Advances in Infectious Disease, 8.

G

González-García, Laura E., Macgregor, Melanie N., Visalakshan, Rahul M., Lazarian, Artur, Cavallaro, Alex A., Morsbach, Svenja, Mierczynska-Vasilev, Agnieszka, Mailänder, Volker, Landfester, Katharina, and Vasilev, Krasimir (2022) Nanoparticles Surface Chemistry Influence on Protein Corona Composition and Inflammatory Responses. Nanomaterials, 12 (4). 682.

Grundy, John, and Biggs, Beverley Ann (2019) The impact of conflict on immunisation coverage in 16 countries. International Journal of Health Policy and Management, 8 (4). pp. 211-221.

H

He, Wen-Qiang, Karl, Stephan, White, Michael T., Nguitragool, Wang, Monteiro, Wuelton, Kuehn, Andrea, Gruszczyk, Jakub, Franca, Camila T., Sattabongkot, Jetsumon, Lacerda, Marcus V.G., Thama, Wai-Hong, and Mueller, Ivo (2019) Antibodies to Plasmodium vivax reticulocyte binding protein 2b are associated with protection against P. vivax malaria in populations living in low malaria transmission regions of Brazil and Thailand. PLoS Neglected Tropical Diseases, 13 (8). e0007596.

Hoogerwerf, Marie-Astrid, Coffeng, Luc E., Brienen, Eric A. T., Janse, Jacqueline J., Langenberg, Marijke C. C., Kruize, Yvonne C. M., Gootjes, Chelsea, Manurung, Mikhael D., Dekker, Mark, Becker, Luke, Erkens, Marianne A.A., van der Beek, Martha T., Ganesh, Munisha S., Feijt, Carola, Winkel, Beatrice M. F., Westra, Inge M., Meij, Pauline, Loukas, Alex, Visser, Leo G., de Vlas, Sake J., Yazdanbakhsh, Maria, van Lieshout, Lisette, and Roestenberg, Meta (2019) New insights into the kinetics and variability of egg excretion in controlled human hookworm infections. Journal of Infectious Diseases, 220 (6). pp. 1044-1048.

Hill, Danika L., Wilson, Danny W., Sampaio, Natalia G., Eriksson, Emily M., Ryg-Cornejo, Victoria, Harrison, G.L. Abby, Uboldi, Alessandro D., Robinson, Leanne, Beeson, James G., Siba, Peter, Cowman, Alan F., Hansen, Diana S., Mueller, Ivo, and Schofield, Louis (2016) Merozoite antigens of Plasmodium falciparum elicit strain-transcending psonizing immunity. Infection and Immunity, 84 (8). pp. 2175-2184.

K

Koh, Darius Wen-Shuo, Tay, Jian-Hua, and Gan, Samuel Ken-En (2023) Engineering Ag43 Signal Peptides with Bacterial Display and Selection. Methods and Protocols, 6 (1). 1.

Karunarathne, Deshapriya, Horne-Debets, Joshua M., Huang, Johnny X., Faleiro, Rebecca, Leow, Chiuan Yee, Amante, Fiona, Watkins, Thomas S., Miles, John, Dwyer, Patrick J., Stacey, Katryn J., Yarski, Michael, Poh, Chek Meng, Lee, Jason S., Cooper, Matthew A., Rénia, Laurent, Richard, Derek, McCarthy, James S., Sharpe, Arlene H., and Wykes, Michelle N. (2016) Programmed death-1 ligand 2-mediated regulation of the PD-L1 to PD-1 axis is essential for establishing CD4⁺ T cell immunity. Immunity, 45 (2). pp. 333-345.

L

Langdon, Kane, Buitrago, Geraldine, Pickering, Darren, Giacomin, Paul, Loukas, Alex, and Haleagrahara, Nagaraja (2022) Na-AIP-1 secreted by human hookworms suppresses collagen-induced arthritis. Inflammopharmacology, 30 (2). pp. 527-535.

Loukas, Alex, Croese, John, Rees, Megan A., and McCarthy, James S. (2022) Not All Worms Were Created Equal. Frontiers in Immunology, 13. 877707.

Ling, Wei-Li, Su, Chinh Tran-To, Lua, Wai-Heng, Yeo, Joshua Yi, Poh, Jun-Jie, Ng, Yuen-Ling, Wipat, Anil, and Gan, Samuel Ken-En (2022) Variable-heavy (VH) families influencing IgA1&2 engagement to the antigen, FcαRI and superantigen proteins G, A, and L. Scientific Reports, 12. 6510.

Laugel, Bruno, Lloyd, Angharad, Meermeier, Erin W., Crowther, Michael D., Connor, Thomas R., Dolton, Garry, Miles, John J., Burrows, Scott R., Gold, Marielle C., Lewinsohn, David M., and Sewell, Andrew K. (2016) Engineering of isogenic cells deficient for MR1 with a CRISPR/Cas9 lentiviral system: tools to study microbial antigen processing and presentation to human MR1-restricted T cells. Journal of Immunology, 197 (3). pp. 971-982.

M

Miles, John, Tan, Mai Ping, Dolton, Garry, Edwards, Emily S.J., Galloway, Sarah A.E., Laugel, Bruno, Clement, Mathew, Makinde, Julia, Ladell, Kristin, Matthews, Katherine, Watkins, Thomas S., Tungatt, Katie, Wong, Yide, Lee, Han Siean, Clark, Richard J., Pentier, Johanne M., Attaf, Meriem, Lissina, Anya, Ager, Ann, Gallimore, Awen, Rizkallah, Pierre J., Grass, Stephanie, Rossjohn, Jamie, Burrows, Scott, Cole, David K., Price, David A., and Sewell, Andrew K. (2018) Peptide mimic for influenza vaccination using nonnatural combinatorial chemistry. Journal of Clinical Investigation, 128 (4). pp. 1569-1580.

Masson, Jesse J.R., Murphy, Andrew J., Lee, Man K.S., Ostrowski, Matias, Crowe, Suzanne M., and Palmer, Clovis S. (2017) Assessment of metabolic and mitochondrial dynamics in CD4+ and CD8+ T cells in virologically suppressed HIV-positive individuals on combination antiretroviral therapy. PLoS ONE, 12 (8). e0183931.

Martinez, Nuria, Ketheesan, Natkunam, West, Kim, Vallerskog, Therese, and Kornfeld, Hardy (2016) Impaired recognition of Mycobacterium tuberculosis by Alveolar Macrophages from diabetic mice. Journal of Infectious Diseases, 214 (11). pp. 1629-1637.

N

Nguyen, Thi H.O., Bird, Nicola L., Grant, Emma J., Miles, John J., Thomas, Paul G., Kotsimbos, Tom C., Mifsud, Nicole A., and Kedzierska, Katherine (2016) Maintenance of the EBV-specific CD8+ TCRαβ repertoire in immunosuppressed lung transplant recipients. Immunology and Cell Biology, 95. pp. 77-86.

P

Philip, Reynold Giru (2023) Determination of structure/function relationships of bioactive peptides. PhD thesis, James Cook University.

R

Ryan, Stephanie Margaret (2019) Investigating the immunomodulatory properties of the hookworm recombinant secretome. PhD thesis, James Cook University.

Ramanathan, Babu, Poh, Chit Laa, Kirk, Kristin, McBride, William John Hannan, Aaskov, John, and Grollo, Lara (2016) Synthetic B-cell epitopes eliciting cross-neutralizing antibodies: strategies for future dengue vaccine. PLoS ONE, 11 (5). e0155900. pp. 1-22.

S

Sikder, Suchandan, Rush, Catherine M., Govan, Brenda L., Alim, Md A., and Ketheesan, Natkunam (2019) Anti-streptococcal antibody and T-cell interactions with vascular endothelial cells initiate the development of rheumatic carditis. Journal of Leukocyte Biology, 107 (2). pp. 263-271.

Susilawati, T.N., Jex, A.R., Cantacessi, C., Pearson, M., Navarro, S., Susianto, A., Loukas, A.C., and McBride, W.J.H. (2016) Deep sequencing approach for investigating infectious agents causing fever. European Journal of Clinical Microbiology and Infectious Diseases, 35 (7). pp. 1137-1149.

Szomolay, Barbara, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K., Burrows, Scott R., Roederer, Mario, Price, David A., Wooldridge, Linda, and van den Berg, Hugo A. (2016) Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology, 94 (6). pp. 573-582.

Smith, Corey, Brennan, Rebekah M., Tey, Siok-Keen, Smyth, Mark J., Burrows, Scott R., Miles, John J., Hill, Geoffrey R., and Khanna, Rajiv (2016) Coinfection with human cytomegalovirus genetic variants in transplant recipients and its impact on antiviral T cell immune reconstitution. Journal of Virology, 90 (6). pp. 7497-7507.

T

Too, Lay Khoon, Yau, Belinda, Baxter, Alan G., McGregor, Iain S., and Hunt, Nicholas H. (2019) Double deficiency of toll-like receptors 2 and 4 alters long-term neurological sequelae in mice cured of pneumococcal meningitis. Scientific Reports, 9. 16189.

Theaker, Sarah M., Rius, Cristina, Greenshields-Watson, Alexander, Lloyd, Angharad, Trimby, Andrew, Fuller, Anna, Miles, John J., Cole, David K., Peakman, Mark, Sewell, Andrew K., and Dolton, Garry (2016) T-cell libraries allow simple parallel generation of multiple peptide-specific human T-cell clones. Journal of Immunological Methods, 430. pp. 43-50.

V

Valencia-Hernandez, Ana Maria, Ng, Wei Yi, Ghazanfari, Nazanin, Ghilas, Sonia, de Menezes, Maria N., Holz, Lauren E., Huang, Cheng, English, Kieran, Nuang, Myo, Tan, Peck Szee, Tullett, Kirsteen M., Steiner, Thiago M., Enders, Matthias H., Beattie, Lynette, Chua, Yu Cheng, Jones, Claerwen M., Cozijnsen, Anton, Mollard, Vanessa, Cai, Yeping, Bowen, David G., Purcell, Anthony W., La Gruta, Nicole L., Villadangos, Jose A., De Koning-ward, Tania, Barry, Alyssa E., Barchet, Winfried, Cockburn, Ian A., Mcfadden, Geoffrey I., Gras, Stephanie, Lahoud, Mireille H., Bertolino, Patrick, Schittenhelm, Ralf B., Caminschi, Irina, Heath, William R., and Fernandez-Ruiz, Daniel (2020) A Natural Peptide Antigen within the Plasmodium Ribosomal Protein RPL6 Confers Liver TRM Cell-Mediated Immunity against Malaria in Mice. Cell Host & Microbe, 27 (6). 950-962.e7.