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Eisen, Damon P., Hamilton, Elizabeth, Bodilsen, Jacob, Køster-Rasmussen, Rasmus, Stockdale, Alexander J,, Miner, James, Nielsen, Henrik, Dzupova, Olga, Sethi, Varun, Copson, Rachel K., Harings, Miriam, and Adegboye, Oyelola A. (2022) Longer than 2 hours to antibiotics is associated with doubling of mortality in a multinational community-acquired bacterial meningitis cohort. Scientific Reports, 12. 672.

Stephen, Roland, Alele, Faith, Olumoh, Jamiu, Tyndall, Jennifer, Okeke, Malachy Ifeanyi, and Adegboye, Oyelola (2022) The epidemiological trend of monkeypox and monkeypox-varicella zoster viruses co-infection in North-Eastern Nigeria. Frontiers in Public Health, 10. 1066589.

Peres, Newton G., Wang, Nancy, Whitney, Paul, Engel, Sven, Shreenivas, Meghanashree M., Comerford, Ian, Hocking, Dianna M., Erazo, Anna B., Forster, Irmgard, Kupz, Andreas, Gebhardt, Thomas, McColl, Shaun R., McSorley, Stephen J., Bedoui, Sammy, and Strugnell, Richard A. (2021) CD4+ T cell immunity to Salmonella is transient in the circulation. PLoS Pathogens, 17 (10). e1010004.

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Husain, Aliabbas A., Kupz, Andreas, and Kashyap, Rajpal S. (2021) Controlling the drug-resistant tuberculosis epidemic in India: challenges and implications. Epidemiology and Health, 43. e2021022.

Heijmenberg, Isis, Husain, Aliabbas, Sathkumara Mudiyanse, Harindra D., Muruganandah, Visai, Seifert, Julia, Miranda-Hernandez, Socorro, Kashyap, Rajpal Singh, Field, Matt A., Krishnamoorthy, Gopinath, and Kupz, Andreas (2021) ESX-5-targeted export of ESAT-6 in BCG combines enhanced immunogenicity & efficacy against murine tuberculosis with low virulence and reduced persistence. Vaccine, 39 (50). pp. 7265-7276.

Filbey, Kara J., Finney, Constance A.M., Giacomin, Paul R., and Siracusa, Mark C. (2021) Editorial: Recent advances in the immunology of helminth infection – protection, pathogenesis and panaceas. Frontiers in Immunology, 12. 663753.

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Ezechukwu, Henry C., Diya, Cornelius A., Egoh, Ifunanya J., Abiodun, Mayowa J., Grace, John-Ugwuanya A., Okoh, God'spower R., Adu, Kayode T., and Adegboye, Oyelola A. (2021) Lung microbiota dysbiosis and the implications of SARS-CoV-2 infection in pregnancy. Therapeutic Advances in Infectious Disease, 8.

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Kupz, Andreas (2021) Tuberculosis kills as many people each year as COVID-19. It’s time we found a better vaccine. The Conversation, 15 January 2021.

Pak, Anton, and Adegboye, Oyelola A. (2021) The importance of structural factors in COVID-19 response in Western Pacific. Asia Pacific Journal of Public Health, 33 (8). pp. 977-978.

Sathkumara, Harindra D., Eaton, Janet L., Field, Matt A., Govan, Brenda L., Ketheesan, Natkunam, and Kupz, Andreas (2021) A murine model of tuberculosis/type 2 diabetes comorbidity for investigating the microbiome, metabolome and associated immune parameters. Animal Models and Experimental Medicine, 4 (2). pp. 181-188.

Thurber, Rebecca Vega, Mydlarz, Laura D., Brandt, Marilyn, Harvell, Drew, Weil, Ernesto, Raymundo, Laurie, Willis, Bette L., Langevin, Stan, Tracy, Allison M., Littman, Raechel, Kemp, Keri M., Dawkins, Phoebe, Prager, Katherine C., Garren, Melissa, and Lamb, Joleah (2020) Deciphering coral disease dynamics: integrating host, microbiome, and the changing environment. Frontiers in Ecology and Evolution, 8. 575927.

Stevenson, Lisa A., Roznik, Elizabeth A., Greenspan, Sasha E., Alford, Ross A., and Pike, David A. (2020) Host thermoregulatory constraints predict growth of an amphibian chytrid pathogen (Batrachochytrium dendrobatidis). Journal of Thermal Biology, 87. 102472.

Schmidt, Casey A., Wilson, David T., Cooke, Ira, Potriquet, Jeremy, Tungatt, Katie, Muruganandah, Visai, Boote, Chloe, Kuek, Felicity, Miles, John J., Kupz, Andreas, Ryan, Stephanie, Loukas, Alex, Bansal, Paramjit S., Takjoo, Rozita, Miller, David J., Peigneur, Steve, Tytgat, Jan, and Daly, Norelle (2020) Identification and characterization of a peptide from the stony coral Heliofungia actiniformis. Journal of Natural Products, 83 (11). pp. 3454-3463.

Alim, Mohammad Abdul, Kupz, Andreas, Sikder, Suchandan, Rush, Catherine, Govan, Brenda, and Ketheesan, Natkunam (2020) Increased susceptibility to Mycobacterium tuberculosis infection in a diet-induced murine model of type 2 diabetes. Microbes and Infection, 22 (8). pp. 303-311.

Chang, Wei-Shan, Eden, John-Sebastian, Hall, Jane, Shi, Mang, Rose, Karrie, and Holmes, Edward C. (2020) Metatranscriptomic analysis of virus diversity in urban wild birds with paretic disease. Journal of Virology, 94 (18). e00606-20.

Sathkumara, Harindra D., Muruganandah, Visai, Cooper, Martha M., Field, Matt A., Alim, Md Abdul, Brosch, Roland, Ketheesan, Natkunam, Govan, Brenda, Rush, Catherine M., Henning, Lars, and Kupz, Andreas (2020) Mucosal delivery of ESX-1–expressing BCG strains provides superior immunity against tuberculosis in murine type 2 diabetes. National Academy of Sciences. Proceedings, 117 (34). pp. 20848-20859.

Suwannatrai, Kulwadee, Suwannatrai, Apiporn Thinkhamrop, Loukas, Alex, and Sotillo, Javier (2020) Recent advances on the immunobiology of Bithynia spp. hosts of Opisthorchis viverrini. Developmental and Comparative Immunology, 102. 103460.

Das, Shubhagata, Smith, Kate, Sarker, Subir, Peters, Andrew, Adriaanse, Katherine, Eden, Paul, Ghorashi, Seyed A., Forwood, Jade K., and Raidal, Shane R. (2020) Repeat spillover of beak and feather disease virus into an endangered parrot highlights the risk associated with endemic pathogen loss in endangered species. Journal of Wildlife Diseases, 56 (4). pp. 896-906.

Kupz, Andreas, Pai, Saparna, Giacomin, Paul R., Whan, Jennifer A., Walker, Robert A., Hammoudi, Pierre-Mehdi, Smith, Nicholas C., and Miller, Catherine M. (2020) Treatment of mice with S4B6 IL‑2 complex prevents lethal toxoplasmosis via IL‑12‑ and IL‑18‑dependent interferon‑gamma production by non‑CD4 immune cells. Scientific Reports, 10. 13115.

Pai, Saparna, Muruganandah, Visai, and Kupz, Andreas (2020) What lies beneath the airway mucosal barrier? Throwing the spotlight on antigen-presenting cell function in the lower respiratory tract. Clinical & Translational Immunology, 9 (e1158).

Muruganandah, Visai, Sathkumara, Harindra D., Pai, Saparna, Rush, Catherine M., Brosch, Roland, Waardenberg, Ashley J., and Kupz, Andreas (2020) A systematic approach to simultaneously evaluate safety, immunogenicity, and efficacy of novel tuberculosis vaccination strategies. Science Advances, 6 (10).

Meyer, E.A., Hines, H.B., Clarke, J.M., and Hoskin, C.J. (2020) An update on the status of wet forest stream-dwelling frogs of the Eungella region. Proceedings of the Royal Society of Queensland, 125. pp. 97-115.

Das, Shubhagata, Smith, Kate, Sarker, Subir, Peters, Andrew, Adriaanse, Katherine, Eden, Paul, Ghorashi, Seyed A., Forwood, Jade K., and Raidal, Shane R. (2019) Assessing circovirus gene flow in multiple spill-over events. Virus Genes, 55 (6). pp. 802-814.

Adegboye, Majeed A., Olumoh, Jamiu, Saffary, Timor, Elfaki, Faiz, and Adegboye, Oyelola A. (2019) Effects of time-lagged meteorological variables on attributable risk of leishmaniasis in central region of Afghanistan. Science of the Total Environment, 685. pp. 533-541.

Pruvot, Mathieu, Cappelle, Julien, Furey, Neil, Hul, Vibol, Heng, Huy Sreang, Duong, Veasna, Dussart, Philippe, and Horwood, Paul (2019) Extreme temperature event and mass mortality of insectivorous bats. European Journal of Wildlife Research, 65. 41.

Hutson, Kate Suzanne, Vaughan, David Brendan, and Blair, David (2019) First record of a 'fish' blood fluke (Digenea: Aporocotylidae) from a marine mammal: Cardicola dhangali n. sp. International Journal for Parasitology: Parasites and Wildlife, 10. pp. 23-28.

Campbell, Lachlan, Bower, Deborah S., Clulow, Simon, Stockwell, Michelle, Clulow, John, and Mahony, Michael (2019) Interaction between temperature and sublethal infection with the amphibian chytrid fungus impacts a susceptible frog species. Scientific Reports, 9. 83.

Wilson, Julian R., Saunders, Richard J., and Hutson, Kate S. (2019) Parasites of the invasive tilapia Oreochromis mossambicus: evidence for co-introduction. Aquatic Invasions, 14 (2). pp. 332-349.

Unger, Holger W., Hansa, Annjaleen, Buffet, Christelle, Hasang, Wina, Teo, Andrew, Randall, Louise, Ome-Kaius, Maria, Karl, Stephan, Anuan, Ayen A., Beeson, James G., Mueller, Ivo, Stock, Sarah J., and Rogerson, Stephen J. (2019) Sulphadoxine-pyrimethamine plus azithromycin may improve birth outcomes through impacts on inflammation and placental angiogenesis independent of malarial infection. Scientific Reports, 9. 2260.

Webb, Rebecca Jane, Berger, Lee, Skerratt, Lee F., and Roberts, Alexandra A. (2019) A rapid and inexpensive viability assay for zoospores and zoosporangia of Batrachochytrium dendrobatidis. Journal of Microbiological Methods, 65. 105688.

Miller, Terrence L., Barnett, Samantha, Seymour, Jamie E., Jenkins, Timothy P., McNamara, Marissa, and Adlard, Robert D. (2018) Biliary tract-infecting myxosporeans from estuarine and reef stonefish (Scorpaeniformes: Synanceiidae) off eastern Australia, with descriptions of Sphaeromyxa horrida n. sp. and Myxidium lapipiscis n. sp. (Myxosporea: Bivalvulida). Journal of Parasitology, 104 (3). pp. 254-261.

Bobić, Branko, Thomas, Lian F., Djaković, Olgica Djurković, Devleesschauwer, Brecht, Dermauw, Veronique, Dorny, Pierre, Braae, Uffe Christian, Robertson, Lucy, Saratsis, Anastasios, Eichenberger, Ramon, and Torgerson, Paul R. (2018) Epidemiology of Taenia saginata taeniosis/cysticercosis in the Russian Federation. Parasites & Vectors, 11. 636.

Hoskin, Conrad J., Hines, Harry B., Webb, Rebecca J., Skerratt, Lee F., and Berger, Lee (2018) Naive rainforest frogs on Cape York, Australia, are at risk of the introduction of amphibian chytridiomycosis disease. Australian Journal of Zoology, 66 (3). pp. 174-178.

Guernier, Vanina, Goarant, Cyrille, Benschop, Jackie, and Lau, Colleen L. (2018) A systematic review of human and animal leptospirosis in the Pacific Islands reveals pathogen and reservoir diversity. PLoS Neglected Tropical Diseases, 12 (5). e0006503.

Guernier, Vanina, Richard, Vaea, Nhan, Tuxuan, Rouault, Eline, Tessier, Anita, and Musso, Didier (2017) Leptospira diversity in animals and humans in Tahiti, French Polynesia. PLoS Neglected Tropical Diseases, 11 (6). e0005676. pp. 1-16.

Bond, Thomas E.H., Sorenson, Alanna E., and Schaeffer, Patrick M. (2017) Functional characterisation of Burkholderia pseudomallei biotin protein ligase: a toolkit for anti-melioidosis drug development. Microbiological Research, 199. pp. 40-48.

Becker, C.G., Greenspan, S.E., Tracy, K.E., Dash, J.A., Lambertini, C., Jenkinson, T.S., Leite, D.S., Toledo, L.F., Longcore, J.E., James, T.Y., and Zamudio, K.R. (2017) Variation in phenotype and virulence among enzootic and panzootic amphibian chytrid lineages. Fungal Ecology, 26. pp. 45-50.

Rose, Karrie, Agius, Jessica, Hall, Jane, Thompson, Paul, Eden, John-Sebastian, Srivastava, Jukesh, Tiernan, Brendan, Jenkins, Cheryl, and Phalen, David (2017) Emergent multisystemic Enterococcus infection threatens endangered Christmas Island reptile populations. PLoS One, 12 (7). e0181240.

Eden, John-Sebastian, Rose, Karrie, Ng, Jimmy, Shi, Mang, Wang, Qinning, Sintchenko, Vitali, and Holmes, Edward C. (2017) Francisella tularensis subsp. holarctica in ringtail possums, Australia. Emerging Infectious Diseases, 23 (7). pp. 1198-1201.

Krishnananthasivam, Shivankari, Sathkumara, Harindra Dharshan, Corea, Enoka, Natesan, Mohan, and De Silva, Aruna Dharshan (2017) Gene Expression Profile of Human Cytokines in Response to Burkholderia pseudomallei Infection. mSphere, 2 (2). e00121-17.

Muzari, Mutizwa Odwell, Devine, Gregor, Davis, Joseph, Crunkhorn, Bruce, van den Hurk, Andrew, Whelan, Peter, Russell, Richard, Walker, James, Horne, Peter, Ehlers, Gerhard, and Ritchie, Scott (2017) Holding back the tiger: successful control program protects Australia from Aedes albopictus expansion. PLoS Neglected Tropical Diseases, 11 (2). e0005286.

Greenspan, Sasha E., Bower, Deborah S., Roznik, Elizabeth A., Pike, David, Marantelli, Gerry, Alford, Ross A., Schwarzkopf, Lin, and Scheffers, Brett R. (2017) Infection increases vulnerability to climate change via effects on host thermal tolerance. Scientific Reports, 7. 9349.

Beigier-Bompadre, Macarena, Montagna, Georgina N., Kuhl, Anja A., Lozza, Laura, Weiner, January, Küpz, Andreas, Vogelzang, Alexis, Mollenkopf, Hans-Joachim, Löwe, Delia, Bandermann, Silke, Dorhoi, Anca, Brinkmann, Volker, Matuschewski, Kai, and Kaufmann, Stefan H.E. (2017) Mycobacterium tuberculosis infection modulates adipose tissue biology. PLoS Pathogens, 13 (10). e1006676.

Greenspan, Sasha E., Bower, Deborah S., Webb, Rebecca J., Berger, Lee, Rudd, Donna, Schwarzkopf, Lin, and Alford, Ross A. (2017) White blood cell profiles in amphibians help to explain disease susceptibility following temperature shifts. Developmental and Comparative Immunology, 77. pp. 280-286.

Bond, Thomas E.H., Sorenson, Alanna E., and Schaeffer, Patrick M. (2017) A green fluorescent protein-based assay for high-throughput ligand-binding studies of a mycobacterial biotin protein ligase. Microbiological Research, 205. pp. 35-39.

Perdomo, Carolina, Zedler, Ulrike, Kühl, Anja A., Lozza, Laura, Saikali, Philippe, Sander, Leif E., Vogelzang, Alexis, Kaufmann, Stefan H.E., and Kupz, Andreas (2016) Mucosal BCG vaccination induces protective lung-resident memory T cell populations against tuberculosis. mBio, 7 (6). e01686-16. pp. 1-11.

Bayer-Santos, Ethel, Durkin, Charlotte H., Rigano, Luciano A., Kupz, Andreas, Alix, Eric, Cerny, Ondrej, Jennings, Elliott, Liu, Mei, Ryan, Aindrias S., Lapaque, Nicolas, Kaufmann, Stefan H.E., and Holden, David W. (2016) The Salmonella effector SteD mediates MARCH8-dependent ubiquitination of MHC II molecules and inhibits T cell activation. Cell Host & Microbe, 20 (5). pp. 584-595.

Loiseau, C., Requena, M., Mavigner, M., Cazabat, M., Carrere, N., Suc, B., Barange, K., Alric, L., Marchou, B., Massip, P., Izopet, J., and Delobel, P. (2016) CCR6− regulatory T cells blunt the restoration of gut Th17 cells along the CCR6–CCL20 axis in treated HIV-1-infected individuals. Mucosal Immunology, 9 (5). pp. 1137-1150.

Kupz, Andreas, Zedler, Ulrike, Stäber, Manuela, Perdomo, Carolina, Dorhoi, Anca, Brosch, Roland, and Kaufmann, Stefan H.E. (2016) ESAT-6-dependent cytosolic pattern recognition drives noncognate tuberculosis control in vivo. Journal of Clinical Investigation, 126 (6). pp. 2109-2122.

Fromm, Phillip D., Kling, Jessica C., Remke, Annika, Bogdan, Christian, and Koerner, Heinrich (2016) Fatal Leishmaniasis in the absence of TNF despite a strong Th1 response. Frontiers In Microbiology, 6. 1520. pp. 1-10.

Nolan, Matthew J., Cantacessi, Cinzia, Cutmore, Scott C., Cribb, Thomas H., and Miller, Terrence L. (2016) High-intensity cardiac infections of Phthinomita heinigerae n. sp (Digenea: Aporocotylidae) in the orangelined cardinalfish, Taeniamia fucata (Cantor), off Heron Island on the Great Barrier Reef. Parasitology International, 65 (5, Part A). pp. 371-377.

Waltmann, Andreea, Karl, Stephan, Chiu, Chris, and Mueller, Ivo (2016) Limited degradation of the Plasmodium falciparum gametocyte marker pfs25 mRNA exposed to tropical temperatures: considerations for malaria transmission field studies. American Journal of Tropical Medicine and Hygiene, 94 (4). pp. 886-889.

Das, Shubhagata, Subir, Sarker, Fearnside, Kathleen, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Molecular Characterization of a Beak and Feather Disease Virus Genome from a Purple Crowned Lorikeet (Glossopsitta porphyrocephala). Genome Announcements, 4 (5). e01102-16.

Karl, Stephan, Laman, Moses, Moore, Brioni R., Benjamin, John M., Salib, Mary, Lorry, Lina, Maripal, Samuel, Siba, Peter, Robinson, Leanne J., Mueller, Ivo, and Davis, Timothy M. E. (2016) Risk factors for Plasmodium falciparum and Plasmodium vivax gametocyte carriage in Papua New Guinean children with uncomplicated malaria. Acta Tropica, 160. pp. 1-8.

Greenspan, Sasha E., Roznik, Elizabeth A., Schwarzkopf, Lin, Alford, Ross A., and Pike, David A. (2016) Robust calling performance in frogs infected by a deadly fungal pathogen. Ecology and Evolution, 6 (16). pp. 5964-5972.

Yong, R.Q-Y., Cutmore, S.C., Bray, R.A., Miller, T.L., Semarariana, I.W.Y., Palm, H.W., and Cribb, T.H. (2016) Three new species of blood flukes (Digenea: Aporocotylidae) infecting pufferfishes (Teleostei: Tetraodontidae) from off Bali, Indonesia. Parasitology International, 65 (5, Part A). pp. 432-443.

Kupz, Andreas, Zedler, Ulrike, Stäber, Manuela, and Kaufmann, Stefan H.E. (2016) A mouse model of latent tuberculosis infection to study intervention strategies to prevent reactivation. PLoS ONE, 11 (7). e0158849. pp. 1-13.

Wada, Naohisa, Kawamoto, Tadafumi, Sato, Yui, and Mano, Nobuhiro (2016) A novel application of a cryosectioning technique to undecalcified coral specimens. Marine Biology, 163. 117.

Chakma, S., Picard, J., Duffy, R., Constantinoiu, C., and Gummow, B. (2016) A survey of zoonotic pathogens carried by non-indigenous rodents at the interface of the wet tropics of North Queensland, Australia. Transboundary and Emerging Diseases, 64 (1). pp. 185-193.

Book Chapter

Strugnell, Richard A., Newton, Hayley J., and Kupz, Andreas (2024) Survival strategies of intracellular bacterial pathogens. In: Tang, Yi-Wei, Hindiyeh, Musa, Liu, Dongyou, Sails, Andrew, Spearman, Paul, and Zhang, Jingren, (eds.) Molecular Medical Microbiology. Elsevier, London, United Kingdom, pp. 457-488.

Bourne, David G, Smith, Hillary, and Page, Cathie (2022) Diseases of scleractinian corals. In: Rowley, Andrew F., Coates, Christopher J., and Whitten, Miranda W., (eds.) Invertebrate Pathology. Oxford University Press, Oxford, UK, pp. 77-108.

Thesis

Schmidt, Casey Ann (2022) Characterization of peptides derived from marine organisms. PhD thesis, James Cook University.

Sathkumara, Harindra Darshana (2020) Mechanisms driving tuberculosis susceptibility and vaccine efficacy in HIV/AIDS and type 2 diabetes. PhD thesis, James Cook University.