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Ritschard, Elena A., Whitelaw, Brooke, Albertin, Caroline B., Cooke, Ira R., Strugnell, Jan M., and Simakov, Oleg (2019) Coupled genomic evolutionary histories as signatures of organismal innovations in Cephalopods co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of Cephalopod novelties. BioEssays, 41. 1900073.

Sarker, Subir, Isberg, Sally R., Moran, Jasmin L., De Araujo, Rachel, Elliott, Nikki, Melville, Lorna, Beddoe, Travis, and Helbig, Karla J. (2019) Crocodilepox Virus Evolutionary Genomics Supports Observed Poxvirus Infection Dynamics on Saltwater Crocodile (Crocodylus porosus). Viruses, 11 (12). 1116.

Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Matley, Jordan K., Heupel, Michelle R., Simpfendorfer, Colin A., and Maes, Gregory E. (2019) How does marker choice affect your diet analysis: comparing genetic markers and digestion levels for diet metabarcoding of tropical-reef piscivores. Marine and Freshwater Research, 70 (1). MF17209. pp. 8-18.

Nowland, Samantha J., Silva, Catarina N.S., Southgate, Paul C., and Strugnell, Jan M. (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20. 711.

Sutherland, Michelle, Sarker, Subir, and Raidal, Shane R. (2019) Molecular and microscopic characterisation of a novel pathogenic herpesvirus from Indian ringneck parrots (Psittacula krameri). Veterinary Microbiology, 239. 108428.

Cooke, Ira, Mead, Oliver, Whalen, Casey, Boote, Chloe, Moya, Aurelie, Ying, Hua, Robbins, Steven, Strugnell, Jan M., Darling, Aaron, Miller, David, Voolstra, Christian, and Adamska, Maya (2019) Molecular techniques and their limitations shape our view of the holobiont. Zoology, 137. 125695.

Roura, Alvaro, Amor, Michael, Gonzalez, Angel F., Guerra, Angel, Barton, Eric D., and Strugnell, Jan M. (2019) Oceanographic processes shape genetic signatures of planktonic cephalopod paralarvae in two upwelling regions. Progress in Oceanography, 170. pp. 11-27.

Rowland, Joshua, Akbarov, Artur, Eales, James, Xu, Xiaoguang, Dormer, John P., Guo, Hui, Denniff, Matthew, Jiang, Xiao, Ranjzad, Parisa, Nazgiewicz, Alicja, Ribeiro Prestes, Prescilla, Antczak, Andrzej, Szulinska, Monika, Wise, Ingrid A., Zukowska-Szczechowska, Ewa, Bogdanski, Pawel, Woolf, Adrian S., Samani, Nilesh J., Charchar, Fadi J., and Tomaszewski, Maciej (2019) Uncovering genetic mechanisms of kidney aging through transcriptomics, genomics, and epigenomics. Kidney International, 95 (3). pp. 624-635.

Monteuuis, Geoffray, Wong, Justin J.L., Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2019) The changing paradigm of intron retention: regulation, ramifications and recipes. Nucleic Acids Research, 47 (22). pp. 11497-11513.

Waardenberg, Ashley J., and Field, Matthew A. (2019) consensusDE: an R package for assessing consensus of multiple RNA-seq algorithms with RUV correction. PeerJ, 7. e8206. pp. 1-16.

Sarker, Subir, Das, Shubhagata, Forwood, Jade K., and Raidal, Shane R. (2019) The first complete mitogenome of Australia’s largest raptor, the wedge-tailed eagle (Aquila audax). Mitochondrial DNA Part B: Resources, 4 (1). pp. 434-436.

Sarker, Subir, Sutherland, Michelle, Talukder, Saranika, Das, Shubhagata, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) The first complete mitogenome of Indian ringneck (Psittacula krameri) demonstrates close phylogenetic relationship with Eclectus parrot. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3579-3581.

Catullo, Renee A., Yeap, Heng L., Lee, Siu F., Bragg, Jason G., Cheesman, Jodie, De Faveri, Stefano, Edwards, Owain, Hee, Alvin K.W., Popa, Angel D., Schiffer, Michele, and Oakeshott, John G. (2019) A genome-wide approach for uncovering evolutionary relationships of Australian Bactrocera species complexes (Diptera: Tephritidae). Invertebrate Systematics, 33 (4). pp. 618-627.

Robbins, Steven J., Singleton, Caitlin M., Chan, Cheong Xin, Messer, Lauren F., Geers, Aileen U., Ying, Hua, Baker, Alexander, Bell, Sara C., Morrow, Kathleen M., Ragan, Mark A., Miller, David J., Forêt, Sylvain, Voolstra, Christian R., Tyson, Gene W., Bourne, David G., Ball, Eldon, Beeden, Roger, Berumen, Michael, Aranda, Manuel, Ravasi, Timothy, Bongaerts, Pim, Hoegh-Guldberg, Ove, Cooke, Ira, Leggat, Bill, Sprungala, Susanne, Fitzgerald, Anna, Shang, Catherine, Lundgren, Petra, Fyffe, Theresa, Rubino, Francesco, van Oppen, Madeleine, Weynberg, Karen, and Bells, Sara C. (2019) A genomic view of the reef-building coral Porites lutea and its microbial symbionts. Nature Microbiology, 4 (12). pp. 2090-2100.

McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) microDecon: a highly accurate read‐subtraction tool for the post‐sequencing removal of contamination in metabarcoding studies. Environmental DNA, 1 (1). pp. 14-25.

Calcino, Andrew D., de Oliveira, André Luiz, Simakov, Oleg, Schwaha, Thomas, Zieger, Elisabeth, Wollesen, Tim, and Wanninger, Andreas (2019) The quagga mussel genome and the evolution of freshwater tolerance. DNA Research, 26 (5). pp. 411-422.

Zarrella, Ilaria, Herten, Koen, Maes, Gregory E., Tai, Shuaishuai, Yang, Ming, Seuntjens, Eve, Ritschard, Elena A., Zach, Michael, Styfhals, Ruth, Sanges, Remo, Simakov, Oleg, Ponte, Giovanna, and Fiorito, Graziano (2019) The survey and reference assisted assembly of the Octopus vulgaris genome. Scientific Data, 6. 13.

Guernier, Vanina, Allan, Kathryn J., and Goarant, Cyrille (2018) Advances and challenges in barcoding pathogenic and environmental Leptospira. Parasitology, 145 (5). pp. 595-607.

Sarker, S., Das, S., Helbig, K., Peters, A., and Raidal, S.R. (2018) Genome sequence of an Australian strain of canid alphaherpesvirus 1. Australian Veterinary Journal, 96 (1-2). pp. 24-27.

Sarker, Subir, Isberg, Sally R., Milic, Natalie L., Lock, Peter, and Helbig, Karla J. (2018) Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia. Scientific Reports, 8 (1). 5623.

Xu, Xiaguang, Eales, James M., Akbarov, Artur, Guuo, Hui, Becker, Lorenz, Talavera, David, Ashraf, Fehzan, Nawaz, Jabran, Pramanik, Sanjeev, Bowes, John, Jiang, Xiao, Dormer, John, Denniff, Matthew, Antczak, Andrzej, Szulinska, Monika, Wise, Ingrid, Prestes, Priscilla R., Glyda, Maciej, Bogdanski, Pawel, Zukowska-Szczechowska, Ewa, Berzuini, Carlo, Woolf, Adrian S., Samani, Nilesh J., Charchar, Fadi J., and Tomaszewski, Maciej (2018) Molecular insights into genome-wide association studies of chronic kidney disease-defining traits. Nature Communications, 9. 4800.

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Maroso, F., Hillen, J.E.J., Pardo, B.G., Gkagkavouzis, K., Coscia, I., Hermida, M., Franch, R., Hellemans, B., Van Houdt, J., Simionati, B., Taggart, J.B., Nielsen, E.E., Maes, G.E., Ciavaglia, S.A., Webster, L.M., Volckaert, F.A.M., Martínez, P., Bargelloni, Luca, Ogden, R., and AquaTrace Consortium (2018) Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species. Marine Genomics, 39. pp. 64-72.

Bragg, Jason G., Potter, Sally, Afonso Silva, Ana C., Hoskin, Conrad J., Bai, Benjamin Y.H., and Moritz, Craig (2018) Phylogenomics of a rapid radiation: the Australian rainbow skinks. BMC Evolutionary Biology, 18. 15.

Pazmiño, Diana A., Maes, Gregory E., Green, Madeline E., Simpfendorfer, Colin A., Hoyos-Padilla, E. Mauricio, Duffy, Clinton J.A., Meyer, Carl G., Kerwath, Sven E., Salinas-de-Leon, Pelayo, and van Herwerden, Lynne (2018) Strong trans-Pacific break and local conservation units in the Galapagos shark (Carcharhinus galapagensis) revealed by genome-wide cytonuclear markers. Heredity, 120. pp. 407-421.

Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J.H., Voolstra, Christian R., Ragan, Mark A., and Chan, Cheong Xin (2018) Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications Biology, 1. 95.

Terraneo, Tullia I., Arrigoni, Roberto, Benzoni, Francesca, Forsman, Zac H., and Berumen, Michael L. (2018) Using ezRAD to reconstruct the complete mitochondrial genome of Porites fontanesii (Cnidaria: Scleractinia). Mitochondrial DNA Part B: Resources, 3 (1). pp. 173-174.

Naude, Tanian, Pant, Sameer, Tavassoli, Mousa, Sarker, Subir, and Ghorashi, Seyed Ali (2018) The complete mitochondrial genome of Linguatula serrata (tongue worm) isolated from a dog and phylogenetic analysis. Mitochondrial DNA Part B: Resources, 3 (1). pp. 357-358.

Das, Shubhagata, Rakib, Tofazzal Md, Islam, Md Shafiqul, Rahaman, Md Mustafizur, Das, Tridip, Hossain, Mohammad Alamgir, Sarker, Subir, and Raidal, Shane R. (2018) The first complete mitogenome of Indian star tortoise (Geochelone elegans). Mitochondrial DNA Part B: Resources, 3 (2). pp. 1112-1113.

Sarker, Subir, Das, Shubhagata, Ghorashi, Seyed A., Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2018) The first complete mitogenome of red-bellied parrot (Poicephalus rufiventris) resolves phylogenetic status within Psittacidae. Mitochondrial DNA Part B: Resources, 3 (1). pp. 195-197.

Raeymaekers, Joost A.M., Chaturvedi, Anurag, Hablützel, Pascal I., Verdonck, Io, Hellemans, Bart, Maes, Gregory, De Meester, Luc, and Volckaert, Filip A.M. (2017) Adaptive and non-adaptive divergence in a common landscape. Nature Communications, 8. 267.

Sarker, Subir, Das, Shubhagata, Frith, Sarah, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Complete mitochondrial genome sequence of an Australian little penguin (Eudyptula minor novaehollandia, J.R. Forster, 1781). Mitochondrial DNA Part B: Resources, 2 (2). pp. 428-429.

Paparini, Andrea, Yang, Rongchang, Chen, Linda, Tong, Kaising, Gibson-Kueh, Susan, Lymbery, Alan, and Ryan, Una M. (2017) Cryptosporidium in fish: alternative sequencing approaches and analyses at multiple loci to resolve mixed infections. Parasitology, 144 (13). pp. 1811-1820.

Hillen, J.E.J., Coscia, I., Vandeputte, M., Herten, K., Hellemans, B., Maroso, F., Vergnet, A., Allal, F., Maes, Gregory, and Volckaert, F.A.M. (2017) Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture, 479. pp. 742-749.

Firth, Cadhla, Blasdell, Kim R., Amos-Ritchie, Rachel, Sendow, Indrawati, Agnihotri, Kalpana, Boyle, David B., Daniels, Peter, Kirkland, Peter, and Walker, Peter J. (2017) Genomic analysis of bluetongue virus episystems in Australia and Indonesia. Veterinary Research, 48. 82.

Sarker, Subir, Das, Shubhagata, Lavers, Jennifer L., Hutton, Ian, Helbig, Karla, Imbery, Jacob, Upton, Chris, and Raidal, Shane R. (2017) Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). BMC Genomics, 18 (1). 298.

Silva, C.N.S., McFarlane, S.E., Hagen, I.J., Rönnegård, L., Billing, A.M., Kvalnes, T., Kemppainen, P., Rønning, B., Ringsby, T.H., Sæther, B-E., Qvarnström, A., Ellegren, H., Jensen, H., and Husby, A. (2017) Insights into the genetic architecture of morphological traits in two passerine bird species. Heredity, 119. pp. 197-205.

Sarker, Subir, Roberts, Hayley K., Tidd, Naomie, Ault, Shayne, Ladmore, Georgia, Peters, Andrew, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. Scientific Reports, 7. 16472.

Gruenstaeudl, Michael, Nauheimer, Lars, and Borsch, Thomas (2017) Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships. Plant Systematics and Evolution, 303 (9). pp. 1251-1270.

Direk, Nese, Williams, Stephanie, Smith, Jennifer A., Ripke, Stephan, Air, Tracy, Amare, Azmeraw T., Amin, Najaf, Baune, Bernhard T., Bennett, David A., Blackwood, Douglas H.R., Boomsma, Dorret, Breen, Gerome, Buttenschøn, Henriette N., Byrne, Enda M., Børglum, Anders D., Castelao, Enrique, Cichon, Sven, Clarke, Toni-Kim, Cornelis, Marilyn C., Dannlowski, Udo, De Jager, Philip L., Demirkan, Ayse, Domenici, Enrico, van Duijn, Cornelia M., Dunn, Erin C., Eriksson, Johan G., Esko, Tonu, Faul, Jessica D., Ferrucci, Luigi, Fornage, Myriam, de Geus, Eco, Gill, Michael, Gordon, Scott D., Grabe, Hans Jörgen, van Grootheest, Gerard, Hamilton, Steven P., Hartman, Catharina A., Heath, Andrew C., Hek, Karin, Hofman, Albert, Homuth, Georg, Horn, Carsten, Hottenga, Jouke Jan, Kardia, Sharon L.R., Kloiber, Stefan, Koenen, Karestan, Kutalik, Zoltán, Ladwig, Karl-Heinz, Lahti, Jari, Levinson, Douglas F., Lewis, Cathryn M., Lewis, Glyn, Li, Qingqin S., Llewellyn, David J., Lucae, Susanne, Lunetta, Kathryn L., MacIntyre, Donald J., Madden, Pamela, Martin, Nicholas G., McIntosh, Andrew M., Metspalu, Andres, Milaneschi, Yuri, Montgomery, Grant W., Mors, Oles, Mosley, Thomas H., Murabito, Joanne M., Müller-Myhsok, Bertram, Nöthen, Markus M., Nyholt, Dale R., O'Donovan, Michael C., Penninx, Brenda W., Pergadia, Michele L., Perlis, Roy, Potash, James B., Preisig, Martin, Purcell, Shaun M., Quiroz, Jorge A., Räikkönen, Katri, Rice, John P., Rietschel, Marcella, Rivera, Margarita, Schulze, Thomas G., Shi, Jianxin, Shyn, Stanley, Sinnamon, Grant C., Smit, Johannes H., Smoller, Jordan W., Snieder, Harold, Tanaka, Toshiko, Tansey, Katherine E., Teumer, Alexander, Uher, Rudolf, Umbricht, Daniel, Van der Auwera, Sandra, Ware, Erin, Weir, David R., Weissman, Myrna M., Willemsen, Gonneke, Yang, Jingyun, Zhao, Wei, Tiemeier, Henning, and Sullivan, Patrick F. (2017) An analysis of two genome-wide association meta-analyses identifies a new locus for broad depression phenotype. Biological Psychiatry, 82 (5). pp. 322-329.

Sarker, Subir, Helbig, Karla, and Raidal, Shane R. (2017) The first complete mitochondrial genome sequence of an Australian raven (Corvus coronoides). Mitochondrial DNA Part B: Resources, 2 (2). pp. 473-474.

Takahashi, Hideaki, Hayashi, Masayuki, Ushizawa, Koichi, Nishino, Kagetomo, Haga, Yasutoshi, Saito, Takao, Fujimori, Yuki, Iwama, Nagako, Takeda, Hisato, Komatsu, Masanori, and Malau-Aduli, Aduli E.O. (2016) Association of bovine fatty acid desaturase 2 gene single-nucleotide polymorphisms with intramuscular fatty acid composition in Japanese black steers. Open Journal of Animal Sciences, 6 (2). pp. 105-115.

Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Mbandi, Stanley Kimbung, Jonas, Mario, Hin Yan Tong, Amy, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell, Moxon, Simon, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Kumar Katneni, Vinaya, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamás, Turner, Stephen W., Lok, Si, Christoffels, Alan, and Orbán, László (2016) Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genetics, 12 (4). pp. 1-35.

Taillebois, Laura, Dudgeon, Christine, Maher, Safia, Crook, David A., Saunders, Thor M., Barton, Diane P., Taylor, Jonathan A., Welch, David J., Newman, Stephen J., Travers, Michael J., Saunders, Richard J., and Ovenden, Jennifer (2016) Characterization, development and multiplexing of microsatellite markers in three commercially exploited reef fish and their application for stock identification. PeerJ, 4. e2418. pp. 1-18.

Capel, K.C.C., Migotto, A.E., Zilberberg, C., Lin, M.F., Forsman, Z., Miller, D.J., and Kitahara, M.V. (2016) Complete mitochondrial genome sequences of Atlantic representatives of the invasive Pacific coral species Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): implications for species identification. Gene, 590 (2). pp. 270-277.

Li, You, Yagi, Hisato, Onuoha, Ezenwa Obi, Damerla, Rama Rao, Francis, Richard, Furutani, Yoshiyuki, Tariq, Muhammad, King, Stephen M., Hendricks, Gregory, Cui, Cheng, Saydmohammed, Manush, Lee, Dong Min, Zahid, Maliha, Sami, Iman, Leatherbury, Linda, Pazour, Gregory J., Ware, Stephanie M., Nakanishi, Toshio, Goldmuntz, Elizabeth, Tsang, Michael, and Lo, Cecilia W. (2016) DNAH6 and its interactions with PCD genes in heterotaxy and primary ciliary dyskinesia. PLoS Genetics, 12 (2). e1005821.

Wise, Ingrid, and Charchar, Fadi (2016) Epigenetic modifications in essential hypertension. International Journal of Molecular Sciences, 17 (4). 451.

Das, Shubhagata, Sarker, Subir, Peters, Andrew, Ghorashi, Seyed A., Phalen, David, Forwood, Jade K., and Raidal, Shane R. (2016) Evolution of circoviruses in lorikeets lags behind its hosts. Molecular Phylogenetics and Evolution, 100. pp. 281-291.

Huang, Bixing, Firth, Cadhla, Watterson, Daniel, Allcock, Richard, Colmant, Agathe M.G., Hobson-Peters, Jody, Kirkland, Peter, Hewitson, Glen, Mcmahon, Jamie, Hall-Mendelin, Sonja, van den Hurk, Andrew F., and Warrilow, David (2016) Genetic characterization of archived bunyaviruses and their potential for emergence in Australia. Emerging Infectious Diseases, 22 (5). pp. 833-840.

Kjeldsen, Shannon R., Zenger, Kyall R., Leigh, Kellie, Ellis, William, Tobey, Jenifer, Phalen, David, Melzer, Alistair, FitzGibbon, Sean, and Raadsma, Herman W. (2016) Genome-wide SNP loci reveal novel insights into koala (Phascolarctos cinereus) population variability across its range. Conservation Genetics, 17 (2). pp. 337-353.

Das, Shubhagata, Subir, Sarker, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Whole-Genome Sequence of a Beak and Feather Disease Virus Isolate from a Fledgling Red-Capped Parrot (Purpureicephalus spurius). Genome Announcements, 4 (5). e01108-16.

Li, Jia, Bian, Chao, Hu, Yinchang, Mu, Xidong, Shen, Xueyan, Ravi, Vydianathan, Kuznetsova, Inna S., Sun, Ying, Xinxin, You, Qui, Ying, Zhang, Xinhui, Yu, Hui, Huang, Yu, Xu, Pao, Gu, Ruobo, Xu, Junmin, Orban, Laszlo, Venkatesh, Byrappa, and Shi, Qiong (2016) A chromosomelevel genome assembly of the Asian arowana, Scleropages formosus. Scientific Data, 3. 160105.

Sarker, Subir, Das, Shubhagata, Forwood, Jade, Helbig, Karla, and Raidal, Shane R. (2016) The complete mitochondrial genome sequence of an Endangered powerful owl (Ninox strenua). Mitochondrial DNA Part B: Resources, 1 (1). pp. 722-723.

Lu, Xia, Wang, Hongxia, Li, Yan, and Liu, Baozhong (2016) The impact of selection on population genetic structure in the clam Meretrix petechialis revealed by microsatellite markers. Genetica, 144 (1). pp. 1-8.

Srivastava, Mansi, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E.A., Mitros, Therese, Richards, Gemma S., Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H, Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M., Oakley, Todd H., Plachetzki, David C., Zhai, Yufeng, Adamski, Marcin, Calcino, Andrew, Cummins, Scott F., Goodstein, David M., Harris, Christina, Jackson, Daniel J., Leys, Sally P., Shu, Shengqiang, Woodcroft, Ben J., Vervoort, Michel, Kosik, Kenneth S., Manning, Gerard, Degnan, Bernard M., and Rokhsar, Daniel S. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature, 466. pp. 720-726.

Book Chapter

Pujolar, José Martin, and Maes, Gregory E. (2016) Evolutionary genomics of North Atlantic eels: current status and perspectives. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 36-51.

Conference Item

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2018) Summer mortality in molluscs: the genetic basis for resilience and susceptibility. In: Breeding Focus 2018. pp. 59-79. From: Breeding Focus 2018: reducing heat stress, 19-20 September 2018, Armidale, NSW, Australia.

Thesis

Lau, Sally Cheuk Ying (2022) Quaternary evolutionary persistence of Southern Ocean benthic taxa. PhD thesis, James Cook University.

Whitelaw, Brooke (2021) The iridescent enigma: genome evolution and species boundaries of the blue-ringed octopus species complex (Octopodidae: Hapalochlaena). PhD thesis, James Cook University.

Kjeldsen, Shannon Rikke (2020) Addressing koala conservation management needs: applying novel genomic methods and assessing ecological exchangeability and genetic diversity across the species range. PhD thesis, James Cook University.

Seid, Mengistu Endris (2020) Rational vaccine development for malaria from genomic sequence information. PhD thesis, James Cook University.

Simpson, Lalita (2019) Phylogenomic insights into the spatio-temporal evolution of the Asian and Australasian Bulbophyllum (Orchidaceae). PhD thesis, James Cook University.