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Monteuuis, Geoffray, Schmitz, Ulf, Petrova, Veronika, Kearney, Padraic S., and Rasko, John E.J. (2020) Holding on to junk bonds: intron retention in cancer and therapy. Cancer Research, 81 (4). pp. 779-789.

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Oudot, Morgane, Neige, Pascal, Ben Shir, Ira, Schmidt, Asher, Strugnell, Jan M., Plasseraud, Laurent, Broussard, Cédric, Hoffmann, René, Lukeneder, Alexander, and Marin, Frédéric (2020) The shell matrix and microstructure of the Ram's Horn squid: molecular and structural characterization. Journal of Structural Biology, 211 (1). 107507.

Hendriks, W. Karen, Colleoni, Silvia, Galli, Cesare, Paris, Damien B.B.P., Colenbrander, Ben, and Stout, Tom A.E. (2019) Mitochondrial DNA replication is initiated at blastocyst formation in equine embryos. Reproduction, Fertility and Development, 31 (3). pp. 570-578.

Rocker, Melissa M., Kenkel, Carly D., Francis, David S., Willis, Bette L., and Bay, Line K. (2019) Plasticity in gene expression and fatty acid profiles of Acropora tenuis reciprocally transplanted between two water quality regimes in the central Great Barrier Reef, Australia. Journal of Experimental Marine Biology and Ecology, 511. pp. 40-53.

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Kenkel, Carly D., Moya, Aurelie, Strahl, Julia, Humphrey, Craig, and Bay, Line K. (2018) Functional genomic analysis of corals from natural CO2‐seeps reveals core molecular responses involved in acclimatization to ocean acidification. Global Change Biology, 24 (1). pp. 158-171.

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Henstridge, Michelle A., Aulsebrook, Lucinda, Koyama, Takashi, Johnson, Travis K., Whisstock, James C., Tiganis, Tony, Mirth, Christen K., and Warr, Coral G. (2018) Torso-Like Is a Component of the Hemolymph and Regulates the Insulin Signaling Pathway in Drosophila. Genetics, 208 (4). pp. 1523-1533.

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De Meyer, J., Maes, G.E., Dirks, R.P., and Adriaens, D. (2017) Differential gene expression in narrow- and broad-headed European glass eels (Anguilla anguilla) points to a transcriptomic link of head shape dimorphism with growth rate and chemotaxis. Molecular Ecology, 26 (15). pp. 3943-3953.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., and Strugnell, Jan M. (2017) Epipodial tentacle gene expression and predetermined resilience to summer mortality in the commercially important greenlip abalone, Haliotis laevigata. Marine Biotechnology, 19 (2). pp. 191-205.

Razaghi, Ali, Tan, Emylin, Lua, Linda H.L., Owens, Leigh, Karhikeyan, O.P., and Heimann, Kirsten (2017) Is Pichia pastoris a realistic platform for industrial production of recombinant human interferon gamma? Biologicals, 45. pp. 52-60.

Brady, Aisling K., Willis, Bette L., Harder, Lawrence D., and Vize, Peter D. (2016) Lunar phase modulates circadian gene expression cycles in the broadcast spawning coral Acropora millepora. Biological Bulletin, 230 (2). pp. 130-142.

McIntyre, Jenifer K., Edmunds, Richard C., Redig, Maria G., Mudrock, Emma M., Davis, Jay W., Incardona, John P., Stark, John D., and Scholz, Nathaniel L. (2016) Confirmation of stormwater bioretention treatment effectiveness using molecular indicators of cardiovascular toxicity in developing fish. Environmental Science and Technology, 50 (3). pp. 1561-1569.

Steinig, Eike J., Neuditschko, Markus, Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2016) NETVIEW P: a network visualization tool to unravel complex population structure using genome-wide SNPs. Molecular Ecology Resources, 16 (1). pp. 216-227.

Dixon, Groves B., Bay, Line K., and Matz, Mikhail V. (2016) Evolutionary consequences of DNA methylation in a basal Metazoan. Molecular Biology and Evolution, 33 (9). pp. 2285-2293.

Gierz, Sarah L., Gordon, Benjamin R., and Leggat, William (2016) Integral light-harvesting complex expression in Symbiodinium within the coral Acropora aspera under thermal stress. Scientific Reports, 6. 25081.

Pernice, Mathieu, Sinutok, Sutinee, Sablok, Gaurav, Commault, Audrey S., Schliep, Martin, Macreadie, Peter I., Rasheed, Michael A., and Ralph, Peter J. (2016) Molecular physiology reveals ammonium uptake and related gene expression in the seagrass Zostera muelleri. Marine Environmental Research, 122. pp. 126-134.

Moya, Aurelie, Howes, Ella L., Lacoue-Labarthe, Thomas, Foret, Sylvain, Hanna, Bishoy, Medina, Mónica, Munday, Philip L., Ong, Jue-Sheng, Teyssié, Jean-Louis, Torda, Gergely, Watson, Sue-Ann, Miller, David J., Bijma, Jelle, and Gattuso, Jean-Pierre (2016) Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus. Global Change Biology, 22 (12). pp. 3888-3900.

McIntyre, Jenifer K., Edmunds, Richard C., Analucion, Bernadita F., Davis, Jay W., Incardona, John P., Stark, John D., and Scholz, Nathaniel L. (2016) Severe coal tar sealcoat runoff toxicity to fish is prevented by bioretention filtration. Environmental Science and Technology, 50 (3). pp. 1570-1578.

Mohamed, A.R., Cumbo, V., Harii, S., Shinzato, C., Chan, C.X., Ragan, M.A., Bourne, D.G., Willis, B.L., Ball, E.E., Satoh, N., and Miller, D.J. (2016) The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome. Molecular Ecology, 25 (13). pp. 3127-3141.

Book Chapter

Schmitz, Ulf, Monteuuis, Geoffray, Petrova, Veronika, Shah, Jaynish S., and Rasko, John E.J. (2021) Computational methods for intron retention identification and quantification. In: Wolkenhauer, Olaf, Cai, Yudong, and Rozman, Damjana, (eds.) Systems Medicine: integrative, qualitative and computational approaches. Academic Press, London Wall, United Kingdom, pp. 63-74.

Belpaire, Claude, Pujolar, José Martin, Geeraerts, Caroline, and Maes, Gregory E. (2016) Contaminants in eels and their role in the collapse of the eel stocks. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 225-250.

Conference Item

Chartrand, Katie, Rasheed, Michael, Bryant, Catherine, Pernice, Mathieu, and Ralph, Peter (2019) New science informing effective management of the often overlooked deep-water seagrasses of tropical Australia. In: [Presented at the Australian Marine Sciences Association 2019 Conference]. From: Australian Marine Sciences Association Conference 2019: Marine Science for a Blue Economy, 7-11 July 2019, Fremantle, WA, Australia.

Thesis

Pewan, Shedrach Benjamin (2022) Genetic selection for health beneficial long-chain omega-3 fatty acids, intramuscular fat, and fat melting point in Australian white lambs. PhD thesis, James Cook University.

Whitelaw, Brooke (2021) The iridescent enigma: genome evolution and species boundaries of the blue-ringed octopus species complex (Octopodidae: Hapalochlaena). PhD thesis, James Cook University.