A

Anthony, Colin J., McDermott, Grace, Lock, Colin, Miller, Therese, Bentlage, Bastian, and Raymundo, Laurie J. (2024) Depth-independent phenotypic variation of massive Porites coral color morphs. Marine Ecology, 45 (1). e12788.

Anderson-King, K.D., Wayman, C., Stephenson, S., Heron, S.F., Lough, J.M., McWilliam, M., Richardson, L.E., Scott, M.E., and Cantin, N.E. (2023) Branching coral growth and visual health during bleaching and recovery on the central Great Barrier Reef. Coral Reefs, 42. pp. 1113-1129.

Alvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2023) Disturbance-induced changes in population size structure promote coral biodiversity. American Naturalist, 202 (5). pp. 604-615.

Aston, Eoghan (2023) Quantifying and assessing coral reef structural complexity and its role in ecological processes and dynamics using photogrammetry. PhD thesis, James Cook University.

Appert, Collette, Udyawer, Vinay, Simpfendorfer, Colin A., Heupel, Michelle R., Scott, Molly, Currey-Randall, Leanne M., Harborne, Alastair R., Jaine, Fabrice, and Chin, Andrew (2023) Use, misuse, and ambiguity of indices of residence in acoustic telemetry studies. Marine Ecology Progress Series, 714. pp. 27-44.

Arjunwadkar, Chaitanya, Tebbett, Sterling B., Bellwood, David, Bourne, David G., and Smith, Hillary A. (2022) Algal turf structure and composition vary with particulate loads on coral reefs. Marine Pollution Bulletin, 181. 113903.

Andrzejaczek, Samantha, Lucas, Tim. C.D., Goodman, Maurice C., Hussey, Nigel E., Armstrong, Amelia J., Carlisle, Aaron, Coffey, Daniel M., Gleiss, Adrian C., Huveneers, Charlie, Jacoby, David M.P., Meekan, Mark G., Mourier, Johann, Peel, Lauren R., dos Santos Abrantes, Katya, Afonso, Andre S., Ajemian, Matthew J., Anderson, Brooke N., Anderson, Scot D., Araujo, Gonzalo, Armstrong, Asia O., Bach, Pascal, Barnett, Adam, Bennett, Mike B., Bezerra, Natalia A., Bonfil, Ramon, Boustany, Andre M., Bowlby, Heather D., Branco, Ilka, Braun, Camrin D., Brooks, Edward J., Brown, Judith, Burke, Patrick J., Butcher, Paul, Castleton, Michael, Chapple, Taylor K., Chateau, Olivier, Clarke, Maurice, Coelho, Rui, Cortes, Enric, Couturier, Lydie I. E., Cowley, Paul D., Croll, Donald A., Cuevas, Juan M., Curtis, Tobey H., Dagorn, Laurent, Dale, Jonathan J., Daly, Ryan, Dewar, Heidi, Doherty, Philip D., Domingo, Andres, Dove, Alistair D. M., Drew, Michael, Dudgeon, Christine L., Duffy, Clinton A. J., Elliott, Riley G., Ellis, Jim R., Erdmann, Mark, Farrugia, Thomas J., Ferreira, Luciana C., Ferretti, Francesco, Filmalter, John D., Finucci, Brittany, Fischer, Chris, Fitzpatrick, Richard, Forget, Fabien, Forsberg, Kerstin, Francis, Malcolm P., Franks, Bryan R., Gallagher, Austin J., Galvan-Magana, Felipe, Garcia, Mirta L., Gaston, Troy F., Gillanders, Bronwyn M., Gollock, Matthew J., Green, Jonathan R., Green, Sofia, Griffiths, Christopher A., Hammerschlag, Neil, Hasan, Abdi, Hawkes, Lucy A., Hazin, Fabio, Heard, Matthew, Hearn, Alex, Hedges, Kevin J., Henderson, Suzanne M., Holdsworth, John, Holland, Kim N., Howey, Lucy A., Hueter, Robert E., Humphries, Nicholas E., Hutchinson, Melanie, Jaine, Fabrice R. A., Jorgensen, Salvador J., Kanive, Paul E., Labaja, Jessica, Lana, Fernanda O., Lassauce, Hugo, Lipscombe, Rebecca S., Llewellyn, Fiona, Macena, Bruno C. L., Mambrasar, Ronald, McAllister, Jaime D., Phillips, Sophy R. McCully, McGregor, Frazer, McMillan, Matthew N., McNaughton, Lianne M., Mendonca, Sibele A., Meyer, Carl G., Meyers, Megan, Mohan, John A., Montgomery, John C., Mucientes, Gonzalo, Musyl, Michael K., Nasby-Lucas, Nicole, Natanson, Lisa J., O'Sullivan, John B., Oliveira, Paulo, Papastamtiou, Yannis P., Patterson, Toby A., Pierce, Simon J., Queiroz, Nuno, Radford, Craig A., Richardson, Andy J., Richardson, Anthony J., Righton, David, Rohner, Christoph A., Royer, Mark A., Saunders, Ryan A., Schaber, Matthias, Schallert, Robert J., Scholl, Michael C., Seitz, Andrew C., Semmens, Jayson M., Setyawan, Edy, Shea, Brendan D., Shidqi, Rafid A., Shillinger, George L., Shipley, Oliver N., Shivji, Mahmood S., Sianipar, Abraham B., Silva, Joana F., Sims, David W., Skomal, Gregory B., Sousa, Lara L., Southall, Emily J., Spaet, Julia L. Y., Stehfest, Kilian M., Stevens, Guy, Stewart, Joshua D., Sulikowski, James A., Syakurachman, Ismail, Thorrold, Simon R., Thums, Michele, Tickler, David, Tolloti, Mariana T., Townsend, Kathy A., Travassos, Paulo, Tyminski, John P., Vaudo, Jeremy J., Veras, Drausio, Wantiez, Laurent, Weber, Sam B., Wells, R. J. David, Weng, Kevin C., Wetherbee, Bradley M., Williamson, Jane E., Witt, Matthew J., Wright, Serena, Zilliacus, Kelly, Block, Barbara A., and Curnick, David J. (2022) Diving into the vertical dimension of elasmobranch movement ecology. Science Advances, 8 (33).

Armstrong, Eric J., Watson, Sue Ann, Stillman, Jonathon H., and Calosi, Piero (2022) Elevated temperature and carbon dioxide levels alter growth rates and shell composition in the fluted giant clam, Tridacna squamosa. Scientific Reports, 12. 11034.

Able, Kenneth W., Simenstad, Charles A., Strydom, Nadine A., Bradley, Michael, and Sheaves, Marcus (2022) Habitat Use and Connectivity. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. Wiley-Blackwell, pp. 188-254.

Alderdice, Rachel, Pernice, Mathieu, Cardenas, Anny, Hughes, David J., Harrison, Peter L., Boulotte, Nadine, Chartrand, Katie, Kuehl, Michael, Suggett, David J., and Voolstra, Christian R. (2022) Hypoxia as a physiological cue and pathological stress for coral larvae. Molecular Ecology, 31 (2). pp. 571-587.

Abrego, David, Baird, Andrew H., Howells, Emily J., and Smith, Stephen D.A. (2022) Pools of resilience. Bulletin of Marine Science, 98 (1). pp. 51-52.

Aston, Eoghan A., Duce, Stephanie, Hoey, Andrew S., and Ferrari, Renata (2022) A Protocol for Extracting Structural Metrics From 3D Reconstructions of Corals. Frontiers in Marine Science, 9. 854395.

Abhik, Santra, Hope, Pandora, Hendon, Harry H., Hutley, Lindsay B., Johnson, Stephanie, Drosdowsky, Wasyl, Brown, Josephine R, and Duke, Norman C. (2021) Influence of the 2015–2016 El Niño on the record‑breaking mangrove dieback along northern Australia coast. Scientific Reports, 11. 20411.

Ashwood, Lauren M., Mitchell, Michela L., Madio, Bruno, Hurwood, David A., King, Glenn F., Undheim, Eivind A.B., Norton, Raymond S., and Prentis, Peter J. (2021) Tentacle morphological variation coincides with differential expression of toxins in sea anemones. Toxins, 13 (7). 452.

Assis, Juliana M., Abreu, Fernanda, Villela, Helena M.D., Barno, Adam, Valle, Rafael F., Vieira, Rayssa, Taveira, Igor, Duarte, Gustavo, Bourne, David G., Høj, Lone, and Peixoto, Raquel S. (2020) Delivering beneficial microorganisms for corals: rotifers as carriers of probiotic bacteria. Frontiers In Microbiology, 11. 608506.

Allen-Ankins, Slade, and Stoffels, Rick J. (2020) Effects of current and future climates on the growth dynamics and distributions of two riverine fishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (1). pp. 185-197.

Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.

Aeby, Greta Smith, Howells, Emily, Work, Thierry, Abrego, David, Williams, Gareth J., Wedding, Lisa M., Caldwell, Jamie M., Moritsch, Monica, and Burt, John A. (2020) Localized outbreaks of coral disease on Arabian reefs are linked to extreme temperatures and environmental stressors. Coral Reefs, 39. pp. 829-846.

Abesamis, Rene A., Utzurrum, Jean Asuncion T., Raterta, Lucille Jean J., and Russ, Garry R. (2020) Shore-fish assemblage structure in the central Philippines from shallow coral reefs to the mesophotic zone. Marine Biology, 167 (12). 185.

Arrigoni, Roberto, Berumen, Michael L., Mariappan, Kiruthiga G., Beck, Pieter S.A., Hulver, Ann Marie, Montano, Simone, Pichon, Michel, Strona, Giovanni, Terraneo, Tullia Isotta, and Benzoni, Francesca (2020) Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific. Coral Reefs, 39 (4). pp. 1001-1025.

Armstrong, Amelia J., Armstrong, Asia O., Bennett, Michael B., McGregor, Frazer, Abrantes, Kátya G., Barnett, Adam, Richardson, Anthony J., Townsend, Kathy A., and Dudgeon, Christine L. (2020) The geographic distribution of reef and oceanic manta rays (Mobula alfredi and Mobula birostris) in Australian coastal waters. Journal of Fish Biology, 96 (3). pp. 835-840.

Abrantes, Kátya G., Sheaves, Marcus, and Fries, Jakob (2019) Estimating the value of tropical coastal wetland habitats to fisheries: caveats and assumptions. PLoS ONE, 14 (4). e0215350.

Amir, A. Aldrie, and Duke, Norman C. (2019) Distinct characteristics of canopy gaps in the subtropical mangroves of Moreton Bay, Australia. Estuarine, Coastal and Shelf Science, 222. pp. 66-80.

Attenborough, Rosalind M.F., Hayward, David C., Wiedemann, Ursula, Foret, Sylvain, Miller, David J., and Ball, Eldon E. (2019) Expression of the neuropeptides RFamide and LWamide during development of the coral Acropora millepora in relation to settlement and metamorphosis. Developmental Biology, 446 (1). pp. 56-67.

Aihara, Yusuke, Maruyama, Shinichiro, Baird, Andrew H., Iguchi, Akira, Takahashi, Shunichi, and Minagawa, Jun (2019) Green fluorescence from cnidarian hosts attracts symbiotic algae. Proceedings of the National Academy of Sciences of the United States of America, 116 (6). pp. 2118-2123.

Anderson, Kristen D., Cantin, Neal E., Casey, Jordan M., and Pratchett, Morgan S. (2019) Independent effects of ocean warming versus acidification on the growth, survivorship and physiology of two Acropora corals. Coral Reefs, 38 (6). pp. 1225-1240.

Arrigoni, Roberto, Berumen, Michael L., Stolarski, Jaroslaw, Terraneo, Tullia I., and Benzoni, Francesca (2019) Uncovering hidden coral diversity: a new cryptic lobophylliid scleractinian from the Indian Ocean. Cladistics, 35 (3). pp. 301-328.

Abrantes, Kátya G., Brunnschweiler, Juerg M., and Barnett, Adam (2018) You are what you eat: examining the effects of provisioning tourism on shark diets. Biological Conservation, 224. pp. 300-308.

Abesamis, Rene A., Langlois, Tim, Birt, Matthew, Thillainath, Emma, Bucol, Abner A., Arceo, Hazel O., and Russ, Garry R. (2018) Benthic habitat and fish assemblage structure from shallow to mesophotic depths in a storm-impacted marine protected area. Coral Reefs, 37 (1). pp. 81-97.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Lough, Janice M., and Pratchett, Morgan S. (2018) Temporal and taxonomic contrasts in coral growth at Davies Reef, central Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 409-421.

Arrigoni, Roberto, Maggioni, Davide, Montano, Simone, Hoeksema, Bert W., Seveso, Davide, Shlesinger, Tom, Terraneo, Tullia Isotta, Tietbohl, Matthew D., and Berumen, Michael L. (2018) An integrated morpho-molecular approach to delineate species boundaries of Millepora from the Red Sea. Coral Reefs, 37 (4). pp. 967-984.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Pisapia, Chiara, and Pratchett, Morgan S. (2017) Variation in growth rates of branching corals along Australia's Great Barrier Reef. Scientific Reports, 7. 2920. pp. 1-13.

Asson, Danielle, Chapman, John W., and Dumbauld, Brett R. (2017) No evidence that the introduced parasite Orthione griffenis markham, 2004 causes sex change or differential mortality in the native mud shrimp, Upogebia pugettensis (Dana, 1852). Aquatic Invasions, 12 (2). pp. 213-224.

Anticamara, Jonathan A., and Go, Kevin Thomas B. (2017) Impacts of super-typhoon Yolanda on Philippine reefs and communities. Regional Environmental Change, 17 (3). pp. 703-713.

Andrello, Marco, Guilhaumon, François, Albouy, Camille, Parravicini, Valeriano, Scholtens, Joeri, Verley, Philippe, Barange, Manuel, Sumaila, U. Rashid, Manel, Stéphanie, and Mouillot, David (2017) Global mismatch between fishing dependency and larval supply from marine reserves. Nature Communications, 8. 16039.

Almany, Glenn R., Planes, Serge, Thorrold, Simon R., Berumen, Michael L., Bode, Michael, Saenz-Agudelo, Pablo, Bonin, Mary C., Frisch, Ashley J., Harrison, Hugo B., Messmer, Vanessa, Nanninga, Gerrit B., Priest, Mark A., Srinivasan, Maya, Sinclair-Taylor, Tane, Williamson, David H., and Jones, Geoffrey P. (2017) Larval fish dispersal in a coral-reef seascape. Nature Ecology & Evolution, 1 (6). pp. 1-4.

Abesamis, Rene A., Saenz-Agudelo, Pablo, Berumen, Michael L., Bode, Michael, Jadloc, Claro Renato L., Solera, Leilani A., Villanoy, Cesar L., Bernardo, Lawrence Patrick C., Alcala, Angel C., and Russ, Garry R. (2017) Reef-fish larval dispersal patterns validate no-take marine reserve network connectivity that links human communities. Coral Reefs, 36 (3). pp. 791-801.

Allan, Bridie J.M., Domenici, Paolo, Watson, Sue Ann, Munday, Philip L., and McCormick, Mark I. (2017) Warming has a greater effect than elevated CO2 on predator prey interactions in coral reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1857). 20171784. pp. 1-9.

Albert, Simon, Saunders, Megan I., Roelfsema, Chris M., Leon, Javier X., Johnstone, Elizabeth, Mackenzie, Jock R., Hoegh-Guldberg, Ove, Grinham, Alistair R., Phinn, Stuart R., Duke, Norman C, Mumby, Peter J., Kovacs, Eva, and Woodroffe, Colin D. (2017) Winners and losers as mangrove, coral and seagrass ecosystems respond to sea-level rise in Solomon Islands. Environmental Research Letters, 12 (9). 094009. pp. 1-11.

Allen, Jonathan D., Schrage, Kharis R., Foo, Shawna A., Watson, Sue-Ann, and Byrne, Maria (2017) The effects of salinity and pH on fertilization, early development and hatching in the Crown-of-Thorns seastar. Diversity, 9 (1). 13. pp. 1-14.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

Adjeroud, Mehdi, Wallace, Carden C., Bosserelle, Pauline, Payri, Claude, Menou, Jean-Louis, and Pichon, Michel (2016) Reefs at the edge: coral community structure around Rapa, southernmost French Polynesia. Marine Ecology, 37 (3). pp. 565-575.

Adkins, Merritt E., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Large tropical fishes and their use of the nearshore littoral, intertidal and subtidal habitat mosaic. Marine and Freshwater Research, 67. MF14339. pp. 1534-1545.

Abesamis, Rene A., Stockwell, Brian L., Bernardo, Lawrence P.C., Villanoy, Cesar L., and Russ, Garry R. (2016) Predicting reef fish connectivity from biogeographic patterns and larval dispersal modelling to inform the development of marine reserve networks. Ecological Indicators, 66. pp. 534-544.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

B

Burn, D., Hoey, A.S., Matthews, S., Harrison, H.B., and Pratchett, M.S. (2023) Differential bleaching susceptibility among coral taxa and colony sizes, relative to bleaching severity across Australia's Great Barrier Reef and Coral Sea Marine Parks. Marine Pollution Bulletin, 191. 114907.

Borghi, Stefano, Clements, Matthew, Webb, Monique, Bostock, Helen, Webster, Jody M., McNeil, Mardi, Nothdurft, Luke, and Byrne, Maria (2023) Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53 (3). 39.

Blandford, Makeely Isabel (2023) Effects of habitat fragmentation on coral-associated fish assemblages. PhD thesis, James Cook University.

Blandford, M.I., Hillcoat, K.B., Pratchett, M.S., and Hoey, A.S. (2023) Effects of habitat fragmentation on the recruitment and early post-settlement survival of coral reef fishes. Marine Environmental Research, 183. 105798.

Ban, Natalie C., Darling, Emily S., Gurney, Georgina G., Friedman, Whitney, Jupiter, Stacy D, Lestari, W. Peni, Yulianto, Irfan, Pardede, Sinta, Tarigan, Sukma A.R., Prihatiningsih, Puji, Mangubhai, Sangeeta, Naisilisili, Waisea, Dulunaqio, Sirilo, Naggea, Josheena, Ranaivoson, Ravaka, Agostini, Vera N., Ahmadia, Gabby, Blythe, Jessica, Campbell, Stuart J., Claudet, Joachim, Cox, Courtney, Epstein, Graham, Estradivari, Fox, Margaret, Gill, David, Himes-Cornell, Amber, Jonas, Harry, Mcleod, Elizabeth, Muthiga, Nyawira A., and McClanahan, Tim (2023) Effects of management objectives and rules on marine conservation outcomes. Conservation Biology, 37 (6). e14156.

Baird, Andrew, Prior, Susan, Bridge, Thomas, and Cowman, Peter (2023) First records of coral spawning on Norfolk Island. Galaxea, Journal of Coral Reef Studies, 25 (1). pp. 3-4.

Buñuel, Xavier, Alcoverro, Teresa, Boada, Jordi, Zinkunegi, Leire, Smith, Timothy M., Barrera, Anaïs, Casas, Marc, Farina, Simone, Pérez, Marta, Romero, Javier, Arthur, Rohan, and Pagès, Jordi F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, 2023 (6). e09520.

Budd, Alyssa M., Schils, Tom, Cooper, Madalyn K., Lyons, Mitchell B., Mills, Matthew S., Deinhart, Mari E., Le Port, Agnes, Huerlimann, Roger, and Strugnell, Jan M. (2023) Monitoring threatened species with environmental DNA and open ecological data: Local distribution and habitat preferences of scalloped hammerhead sharks (Sphyrna lewini). Biological Conservation, 278 (February 2023). 109881.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley L., Nagelkerken, Ivan, Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2023) Seafloor Terrain Shapes the Three-dimensional Nursery Value of Mangrove and Seagrass Habitats. Ecosystems, 26. pp. 442-456.

Brinkman, Diane L., Flores, Florita, Luter, Heidi M., Nordborg, F. Mikaela, Brooks, Maxime, Parkerton, Thomas F., and Negri, Andrew P. (2023) Sensitivity of the Indo-Pacific coral Acropora millepora to aromatic hydrocarbons. Environmental Pollution, 332. 121963.

Bradley, Michael, Sheaves, Marcus, and Waltham, Nathan J. (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science, 9. 1034039.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Wang, Juntao, Shen, Jupei, Hou, Enqing, Rezaei Rashti, Mehran, Huang, Qiaoyun, Bainbridge, Zoe, and Stevens, Tom (2023) The origin of suspended particulate matter in the Great Barrier Reef. Nature Communications, 14. 5629.

Bowden, Casey L., Streit, Robert P., Bellwood, David R., and Tebbett, Sterling B. (2022) A 3D perspective on sediment turnover and feeding selectivity in blennies. Marine Pollution Bulletin, 180. 113799.

Buelow, Christina A., Connolly, Rod M., Turschwell, Mischa P., Adame, Maria F., Ahmadia, Gabby N., Andradi-brown, Dominic A., Bunting, Pete, Canty, Steven W.J., Dunic, Jillian C., Friess, Daniel A., Lee, Shing Yip, Lovelock, Catherine E., McClure, Eva C., Pearson, Ryan M., Sievers, Michael, Sousa, Ana, Worthington, Thomas A., and Brown, Christopher J. (2022) Ambitious global targets for mangrove and seagrass recovery. Current Biology, 32 (7). 1641-1649.e3.

Burn, Deborah, Matthews, Samuel, Pisapia, Chiara, Hoey, Andrew S., and Pratchett, Morgan S. (2022) Changes in the incidence of coral injuries during mass bleaching across Australia’s Coral Sea Marine Park. Marine Ecology Progress Series, 682. pp. 97-109.

Baje, Leontine, Chin, Andrew, White, William T., and Simpfendorfer, Colin A. (2022) Dietary overlap of carcharhinid sharks in the Gulf of Papua. Marine and Freshwater Research, 73 (5). pp. 605-614.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley J., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Dredging transforms the seafloor and enhances functional diversity in urban seascapes. Science of the Total Environment, 831. 154811.

Bosch, Nestor E., Monk, Jacquomo, Goetze, Jordan, Wilson, Shaun, Babcock, Russell C., Barrett, Neville, Clough, Jock, Currey-Randall, Leanne M., Fairclough, David V., Fisher, Rebecca, Gibbons, Brooke A., Harasti, David, Harvey, Euan S., Heupel, Michelle R., Hicks, Jamie L., Holmes, Thomas H., Huveneers, Charlie, Ierodiaconou, Daniel, Jordan, Alan, Knott, Nathan A., Malcolm, Hamish A., McLean, Dianne, Meekan, Mark, Newman, Stephen J., Radford, Ben, Rees, Matthew J., Saunders, Benjamin J., Speed, Conrad W., Travers, Michael J., Wakefield, Corey B., Wernberg, Thomas, and Langlois, Tim J. (2022) Effects of human footprint and biophysical factors on the body-size structure of fished marine species. Conservation Biology, 36 (2). e13807.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, Travers, Michael, and Sheaves, Marcus (2022) Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions. Ecosystems, 25. pp. 237-251.

Barnes, Michele L., Datta, Amber, Morris, Sheriden, and Zethoven, Imogen (2022) Navigating climate crises in the Great Barrier Reef. Global Environmental Change, 74. 102494.

Benthuysen, Jessica A., Emslie, Michael J., Currey-Randall, Leanne M., Cheal, Alistair J., and Heupel, Michelle R. (2022) Oceanographic influences on reef fish assemblages along the Great Barrier Reef. Progress in Oceanography, 208. 102901.

Barrios-Garrido, Hector, Arias-Ortiz, Angela, Balladares, Clemente, Espinoza-Rodriguez, Ninive, Garcia-Cruz, Marco, Gonzalez, Maria F., Pulido-Petit, Graciela, Rojas-Cañizales, Daniela, Rondon-Medicci, Maria, Vernet, Pedro, and Wildermann, Natalie E. (2022) Records of Olive Ridley Marine Turtles (Lepidochelys olivacea Eschscholtz 1829) in Venezuelan Waters: A Review of Historical Data Sets and Threats. Chelonian Conservation and Biology, 21 (1). pp. 136-140.

Bigal, Eyal, Galili, Ori, van Rijn, Itai, Rosso, Massimiliano, Cleguer, Christophe, Hodgson, Amanda, Scheinin, Aviad, and Tchernov, Dan (2022) Reduction of Species Identification Errors in Surveys of Marine Wildlife Abundance Utilising Unoccupied Aerial Vehicles (UAVs). Remote Sensing, 14 (16). 4118.

Botté, Emmanuelle S., Cantin, Neal E., Mocellin, Veronique J.L., O’Brien, Paul A., Rocker, Melissa M., Frade, Pedro R., and Webster, Nicole S. (2022) Reef location has a greater impact than coral bleaching severity on the microbiome of Pocillopora acuta. Coral Reefs, 41 (1). pp. 63-79.

Balladares, Clemente, Rueda-Roa, Digna, Rodríguez, Diego, Muller-Karger, Frank, and Barrios-Garrido, Hector (2022) Seasonal factors affecting sea turtle nesting in the Southeastern Caribbean Sea (Gulf of Paria, Venezuela). Ocean and Coastal Research, 70. e22032.

Bergstrom, Dana M., Wienecke, Barbara C., van der Hoff, John, Hughes, Lesley, Lindenmayer, David, Ainsworth, Tracy, Baker, Christopher M., Bland, Lucie, Bowman, David, Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine A., Depledge, Michael H., Dickson, Catherine R., Duke, Norman, Helmstedt, Kate J., Holz, Andres, Johnson, Craig, Mcgeoch, Melodie, Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne, Raymond, Ben, Ritchie, Euan, Robinson, Sharon, Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda, Williams, Kristen, Zylstra, Phillip J., and Shaw, Justine D. (2021) Ecosystem collapse from the tropics to the Antarctic: an assessment and response framework. Global Change Biology, 27. pp. 1692-1703.

Brunner, Christopher, Uthicke, Sven, Ricardo, Gerard F., Hoogenboom, Mia O., and Negri, Andrew P. (2021) Climate change doubles sedimentation-induced coral recruit mortality. Science of the Total Environment, 768. 143897.

Bartes, Saia, Simpfendorfer, Colin, Walker, Terence I., King, Carissa, Loneragan, Neil, and Braccini, Matías (2021) Conventional tagging of sharks in Western Australia: the main commercial species exhibit contrasting movement patterns. Marine and Freshwater Research, 72 (11).

Berry, K.L.E., Hess, S., Clark, T.D., Wenger, A.S., Hoogenboom, M.O., and Negri, A.P. (2021) Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish. Marine Pollution Bulletin, 169. 112459.

Bauman, Andrew G., Hoey, Andrew S., Dunshea, Glenn, Fong, Jenny, Chan, Ian Z.W., and Todd, Peter A. (2021) Fear effects and group size interact to shape herbivory on coral reefs. Functional Ecology, 35 (9). pp. 1985-1997.

Barrios-Garrido, Hector, De Turris-Morales, Kareen, and Espinoza-Rodriguez, Ninive Edilia (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: conservation, threats, and population overview. Frontiers in Marine Science, 7. 594021.

Bouyoucos, Ian, Trujillo, Jose E., Weideli, Ornella C., Nakamura, Nao, Mourier, Johann, Planes, Serge, Simpfendorfer, Colin A., and Rummer, Jodie L. (2021) Investigating links between thermal tolerance and oxygen supply capacity in shark neonates from a hyperoxic tropical environment. Science of the Total Environment, 782. 146854.

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Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.

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Daly, Ryan, Venables, Stephanie K., Rogers, Toby D., Filmalter, John D., Hempson, Tessa N., Murray, Taryn S., Hussey, Nigel E., Silva Leal, Isabela, Pereira, Marcos A.M., Mann, Bruce Q., Nharreluga, Bilardo A.S., and Cowley, Paul D. (2023) Persistent transboundary movements of threatened sharks highlight the importance of cooperative management for effective conservation. Marine Ecology-Progress Series, 720. pp. 117-131.

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Duke, Norman (2022) Climate change killed 40 million Australian mangroves in 2015. Here’s why they’ll probably never grow back. The Conversation, 28 July 2022.

D'Alberto, Brooke Minetta (2022) Conservation biology of wedgefishes (Family Rhinidae) and giant guitarfishes (Family Glaucostegidae). PhD thesis, James Cook University.

Duke, Norman Clive, Mackenzie, Jock R., Canning, Adam, Hutley, Lindsay B., Bourke, Adam J., Kovacs, John, Cormier, Riley, Staben, Grant, Lymburner, Leo, and Ai, Emma (2022) ENSO-driven extreme oscillations in mean sea level destabilise critical shoreline mangroves—An emerging threat. PLOS Climate, 1 (8). e0000037.

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Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.

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Den Haring, Sander D., and Sutton, Stephen G. (2019) Comparing intended, self-reported, and observed behavior of snorkelers in the Mombasa Marine Park and Reserve, Kenya. Tourism in Marine Environments, 14 (1-2). pp. 1-17.

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Dujon, Antoine M., Stieglitz, Thomas C., Amice, Erwan, and Webber, D.M. (2019) Snail leaps and bounds: drivers of the diel movement pattern of a large invertebrate, the Caribbean queen conch (Lobatus gigas), in a marginal inshore habitat. Canadian Journal of Zoology, 97 (5). pp. 436-445.

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Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

DiPerna, Stephanie, Hoogenboom, Mia, Noonan, Sam, and Fabricius, Katharina (2018) Effects of variability in daily light integrals on the photophysiology of the corals Pachyseris speciosa and Acropora millepora. PLoS ONE, 13 (9). e0203882.

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McKenna, S.A., Concannon, T.G., Van de Wetering, C., and Rasheed, M.A. (2024) Bowen - McCanes Bay / Port Dennison Seagrass Assessments June 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

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McKenna, S., and Van de Wetering, C. (2024) Marine Benthic Habitat Assessment – Half Tide Tug Harbour, December 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Mather, Rachel, Chin, Andrew, Rigby, Cassandra, Cooke, Steven J., Fahmi, Haque, Alifa Bintha, Mizrahi, Meira, and Grant, Michael I. (2024) Murky waters: Assessing the vulnerabilities of Indo-West Pacific non-marine elasmobranchs to inform future conservation planning priorities. Aquatic Conservation: Marine and Freshwater Ecosystems, 34 (1). e4039.

Morais, Juliano, Tebbett, Sterling B., Morais Araujo, Renato A., and Bellwood, David R. (2024) Natural recovery of corals after severe disturbance. Ecology Letters, 27 (1). e14332.

McKenna, S.A., Concannon, T., Reason, C.L., and Rasheed, M.A. (2024) Port of Abbot Point Long-Term Seagrass Monitoring Program 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T.G., and Hoffmann, L. (2024) Port of Townsville Seagrass Monitoring Program: Brief Report May 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Miller, Michaela E., Motti, Cherie A., Hamann, Mark, and Kroon, Frederieke J. (2023) Assessment of microplastic bioconcentration, bioaccumulation and biomagnification in a simple coral reef food web. Science of the Total Environment, 858. 159615.

Monk, Christopher T., Power, Michael, Freitas, Carla, Harrison, Philip M., Heupel, Michelle, Kuparinen, Anna, Moland, Even, Simpfendorfer, Colin, Villegas-Ríos, David, and Olsen, Esben M. (2023) Atlantic cod individual spatial behaviour and stable isotope associations in a no-take marine reserve. Journal of Animal Ecology, 92 (12). pp. 2333-2347.

Maini, Bani, Blythe, Jessica L., Darling, Emily S., and Gurney, Georgina G. (2023) Charting the value and limits of other effective conservation measures (OECMs) for marine conservation: A Delphi study. Marine Policy, 147. 105350.

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Marangon, Emma, Uthicke, Sven, Patel, Frances, Marzinelli, Ezequiel M., Bourne, David G., Webster, Nicole S., and Laffy, Patrick W. (2023) Life-stage specificity and cross-generational climate effects on the microbiome of a tropical sea urchin (Echinodermata: Echinoidea). Molecular Ecology, 32 (20). pp. 5645-5660.

McKenna, S., and Firby, L. (2023) Marine Benthic Habitat Assessment – Hay Point Coal Terminal Berth 1 Extension, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Firby, L. (2023) Marine Plant Survey – Northern Breakwater Rehabilitation Project – Port of Mackay, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Mason, Benjamin M., Koyanagi, Mitsumasa, Sugihara, Tomohiro, Iwasaki, Makoto, Slepak, Vladlen, Miller, David J., Sakai, Yusuke, and Terakita, Akihisa (2023) Multiple opsins in a reef-building coral, Acropora millepora. Scientific Reports, 13. 1628.

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McCormick, M.I., Fakan, E.P., Vamvounis, G., Bosshard, S., Moad, C., Smyth, E., Gatenby, P., Edmiston, J., Patel, K., and Allan, B.J.M. (2023) No effects of plasticized microplastics on the body condition and reproduction of a marine fish. ICES Journal of Marine Science, 80 (5). pp. 1267-1276.

McKenna, S.A. (2023) Port of Townsville Channel Upgrade Project: Capital Dredge Footprint Seagrass Survey – Updated August 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S. (2023) Port of Townsville Eastern Breakwater Marine Plant Assessment. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Madin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina M.D., Suggett, David J., and van Oppen, Madeleine J.H. (2023) Selecting coral species for reef restoration. Journal of Applied Ecology, 60 (8). pp. 1537-1544.

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Martinez-Baena, Francisco, Raoult, Vincent, Taylor, Matthew D., Gaston, Troy F., McLeod, Ian, and Bishop, Melanie J. (2023) Trophic Structure of Temperate Australian Oyster Reefs Within the Estuarine Seascape: a Stable Isotope Analysis. Estuaries and Coasts, 46. pp. 844-859.

Motson, Katie, Hutson, Kate S., and Hoey, Andrew S. (2023) Variation in the parasite communities of three co-occurring herbivorous coral reef fishes. Journal of Fish Biology, 102 (4). pp. 757-772.

Moore, Billy, Herrera, Marcela, Gairin, Emma, Li, Chengze, Miura, Saori, Jolly, Jeffrey, Mercader, Manon, Izumiyama, Michael, Kawai, Erina, Ravasi, Timothy, Laudet, Vincent, and Ryu, Taewoo (2023) The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish. G3: Genes, Genomes, Genetics, 13 (3). jkad002.

McKenna, S., Carter, A., Smit, N., McMahon, K., and Coles, R. (2023) An inventory of northern Australia’s seagrass data: research report Project 1.32a. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Mihaila, Alisa A., Magnusson, Marie, Glasson, Christopher R.K., and Lawton, Rebecca J. (2023) The reproductive phenology of Asparagopsis armata in New Zealand – Potential shifts 35 years later. Algal Research, 76. 103318.

Morse, Peter, and Huffard, Christine (2022) Chemotactile social recognition in the blue-ringed octopus, Hapalochlaena maculosa. Marine Biology, 169 (8). 99.

McLeod, Ian M., Hein, Margaux Y., Babcock, Russell, Bay, Line, Bourne, David G., Cook, Nathan, Doropoulos, Christopher, Gibbs, Mark, Harrison, Peter, Lockie, Stewart, van Oppen, Madeleine J.H., Mattocks, Neil, Page, Cathie A., Randall, Carly J., Smith, Adam, Smith, Hillary A., Suggett, David J., Taylor, Bruce, Vella, Karen J., Wachenfeld, David, and Boström-Einarsson, Lisa (2022) Coral restoration and adaptation in Australia: The first five years. PLoS ONE, 17 (11). e0273325.