Article

Wu, Siyuan, and Schmitz, Ulf (2023) Single-cell and long-read sequencing to enhance modelling of splicing and cell-fate determination. Computational and Structural Biotechnology Journal, 21. pp. 2373-2380.

Rymer, Tasmin L., and Pillay, Neville (2023) The effects of antibiotics and illness on gut microbial composition in the fawn-footed mosaic-tailed rat (Melomys cervinipes). PLoS ONE, 18. e0281533.

Gill, Jaskaran, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2022) Combining kinetic orders for efficient S-System modelling of gene regulatory network. BioSystems, 220. 104736.

Gamage, Hasini Nakulugamuwa, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2022) Filter feature selection based Boolean Modelling for Genetic Network Inference. BioSystems, 221. 104757.

Wu, Siyuan, Zhou, Tianshou, and Tian, Tianhai (2022) A robust method for designing multistable systems by embedding bistable subsystems. npj Systems Biology and Applications, 8 (10).

Greenfield, Melinda J., Lach, Lori, Congdon, Brad C., Anslan, Sten, Tedersoo, Leho, Field, Matt, and Abell, Sandra E. (2021) Consistent patterns of fungal communities within ant-plants across a large geographic range strongly suggest a multipartite mutualism. Mycological Progress, 20. pp. 681-699.

Su, Chinh Tran-To, Lua, Wai-Heng, Poh, Jun-Jie, Ling, Wei-Li, Yeo, Joshua-Yi, and Gan, Samuel Ken-En (2021) Molecular insights of nickel binding to therapeutic antibodies as a possible new antibody superantigen. Frontiers in Immunology, 12. 676048.

Mitchell, Michela L., Shafee, Thomas, Papenfuss, Anthony T., and Norton, Raymond S. (2019) Evolution of cnidarian trans-defensins: Sequence, structure and exploration of chemical space. Proteins: Structure, Function and Bioinformatics, 87 (7). pp. 551-560.

Shafee, Thomas, Mitchell, Michela L., and Norton, Raymond S. (2019) Mapping the chemical and sequence space of the ShKT superfamily. Toxicon, 165. pp. 95-102.

Lai, Xin, Gupta, Shailendra K., Schmitz, Ulf, Marquardt, Stephan, Knoll, Susanne, Spitschak, Alf, Wolkenhauer, Olaf, Pützer, Brigitte M., and Vera, Julio (2018) MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance. Theranostics, 8 (4). pp. 1106-1120.

Schneider, Maria Victoria, Griffin, Phillippa C., Tyagi, Sonika, Flannery, Madison, Dayalan, Saravanan, Gladman, Simon, Watson-Haigh, Nathan, Bayer, Philipp E., Charleston, Michael, Cooke, Ira, Cook, Rob, Edwards, Richard J., Edwards, David, Gorse, Dominique, McConville, Malcolm, Powell, David, Wilkins, Marc R., and Lonie, Andrew (2017) Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. Briefings in Bioinformatics, 2017.

Hill, David P., Adams, Nico, Bada, Mike, Batchelor, Colin, Berardini, Tanya Z., Dietze, Heiko, Drabkin, Harold J., Ennis, Marcus, Foulger, Rebecca E., Harris, Midori A., Hastings, Janna, Kale, Namrata S., de Matos, Paula, Mungall, Christopher J., Owen, Gareth, Roncaglia, Paola, Steinbeck, Christoph, Turner, Steve, and Lomax, Jane (2013) Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology. BMC Genomics, 14. 513.

Fuellen, Georg, Dengjel, Jorn, Hoeflich, Andreas, Hoeijemakers, Jan, Kestler, Hans A., Kowald, Axel, Priebe, Steffen, Rebholz-Schuhmann, Dietrich, Schmeck, Bernd, Schmitz, Ulf, Stolzing, Alexandra, Sühnel, Jurgen, Wuttke, Daniel, and Vera, Julio (2012) Systems Biology and Bioinformatics in Aging Research: A Workshop Report. Rejuvenation Research, 15 (6). pp. 543-644.

Adams, Nico, Hoehndorf, Robert, Gkoutos, Georgios V., Hansen, Gensine, and Hennig, Christian (2011) PIDO: the primary immunodeficiency disease ontology. Bioinformatics, 27 (22). pp. 3193-3199.

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Book Chapter

Lai, Xin, Schmitz, Ulf, and Vera, Julio (2022) The Role of MicroRNAs in Cancer Biology and Therapy from a Systems Biology Perspective. In: Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio, (eds.) The Role of MicroRNAs in Cancer Biology and Therapy from a Systems Biology Perspective. Advances in Experimental Medicine and Biology, 1385 . Springer, Cham, pp. 1-22.

Schmitz, Ulf, and Wolkenhauer, Olaf (2013) Web Resources for microRNA Research. In: Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio, (eds.) MicroRNA Cancer Regulation: Advanced Concepts, Bioinformatics and Systems Biology Tools. Advances in Experimental Medicine and Biology, 774 . Springer Nature, Dordrecht, Netherlands, pp. 225-250.

Conference Item

Adams, Nico, Hennig, Christian, Hoehndorf, Robert, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, and Hansen, Gesine (2010) The Ontology of Primary Immunodeficiency Diseases (PIDs): Using PIDs to Rethink the Ontology of Phenotypes. In: [Presented at the OBML 2010 Workshop]. IMISE-Report Ne 2/2010. From: OBML 2010: Ontologien in Biomedizin und Lebenswissenschaften, 9-10 September 2010, Mannheim, Germany.

Book

Schmitz, Ulf, Wolkenhauer, Olaf, and Vera-González, Julio (2022) Systems Biology of MicroRNAs in Cancer. Advances in Experimental Medicine and Biology, 1385 . Springer Cham.