Article

Buraphaka, Hathairat, Dobutr, Theerawat, Wiese, Michael D., Lopata, Andreas L., and Daduang, Sakda (2024) Structure-based epitope prediction and assessment of cross-reactivity of Myrmecia pilosula venom-specific IgE and recombinant Sol g proteins (Solenopsis geminata). Scientific Reports, 14. 11145.

Kabasser, Stefan, Pratap, Kunal, Kamath, Sandip, Taki, Aya, Dang, Thanh, Koplin, Jennifer, Perrett, Kirsten, Hummel, Karin, Radauer, Christian, Breiteneder, Heimo, Lopata, Andreas L., and Bublin, Merima (2022) Identification of vicilin, legumin and antimicrobial peptide 2a as macadamia nut allergens. Food Chemistry, 370. 131028.

Toft, Casey J., Sorenson, Alanna E., and Schaeffer, Patrick M. (2022) Rise of the terminator protein tus: A versatile tool in the biotechnologist's toolbox. Analytica Chimica Acta, 1213. 339946.

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Caruana, Nikeisha J., Strugnell, Jan M., Finn, Julian, Faou, Pierre, Plummer, Kim M., and Cooke, Ira R. (2020) Quantitative proteomic analysis of the slime and ventral mantle glands of the Striped Pyjama squid (Sepioloidea lineolata). Journal of Proteome Research, 19. pp. 1491-1501.

Mendoza-Porras, Omar, Kamath, Sandip, Harrison, James O., Colgrave, Michelle L., Huerlimann, Roger, Lopata, Andreas L., and Wade, Nicholas M. (2020) Resolving hemocyanin isoform complexity in haemolymph of black tiger shrimp Penaeus monodon - implications in aquaculture, medicine and food safety. Journal of Proteomics, 218. 103689.

Fingerhut, Legana C. H. W., Miller, David J., Strugnell, Jan M., Daly, Norelle L., and Cooke, Ira R. (2020) ampir: an R package for fast genome-wide prediction of antimicrobial peptides. Bioinformatics, 36 (21). btaa653.

Aibinu, Ibukun E., Smooker, Peter M., and Lopata, Andreas L. (2019) Anisakis nematodes in fish and shellfish- from infection to allergies. International Journal for Parasitology: Parasites and Wildlife, 9. pp. 384-393.

Caruana, Nikeisha J., Strugnell, Jan M., Faou, Pierre, Finn, Julian, and Cooke, Ira R. (2019) Comparative proteomic analysis of slime from the striped pyjama squid, Sepioloidea lineolata, and the southern bottletail squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae). Journal of Proteome Research, 18 (3). pp. 890-899.

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Fingerhut, Legana C.H.W., Strugnell, Jan M., Faou, Pierre, Labiaga, Àlvaro Roura, Zhang, Jia, and Cooke, Ira R. (2018) Shotgun proteomics analysis of saliva and salivary gland tissue from the common octopus Octopus vulgaris. Journal of Proteome Research, 17 (11). pp. 3866-3876.

Cameron, Timothy C., Cooke, Ira, Faou, Pierre, Toet, Hayley, Piedrafita, David, Young, Neil, Rathinasamy, Vignesh, Beddoe, Travis, Anderson, Glenn, Dempster, Robert, and Spithill, Terry W. (2017) A novel ex vivo immunoproteomic approach characterising Fasciola hepatica tegumental antigens identified using immune antibody from resistant sheep. International Journal for Parasitology, 47 (9). pp. 555-567.

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Chaiyadet, Sujittra, Smout, Michael, Laha, Thewarach, Sripa, Banchob, Loukas, Alex, and Sotillo, Javier (2017) Proteomic characterization of the internalization of Opisthorchis viverrini excretory/secretory products in human cells. Parasitology International, 66 (4). pp. 494-502.

Sotillo, Javier, Doolan, Denise, and Loukas, Alex (2017) Recent advances in proteomic applications for schistosomiasis research: potential clinical impact. Expert Review of Proteomics, 14 (2). pp. 171-183.

Chaiyadet, Sujittra, Krueajampa, Watchara, Hipkaeo, Wiphawi, Plosan, Yada, Piratae, Supawadee, Sotillo, Javier, Smout, Michael, Sripa, Banchob, Brindley, Paul J., Loukas, Alex, and Laha, Thewarach (2017) Suppression of mRNAs encoding CD63 family tetraspanins from the carcinogenic liver fluke Opisthorchis viverrini results in distinct tegument phenotypes. Scientific Reports, 7. 14342.

Nuez-Ortin, Waldo G., Carter, Chris G., Wilson, Richard, Cooke, Ira R., Amoroso, Gianluca, Cobcroft, Jennifer M., and Nichols, Peter D. (2017) Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 22. pp. 67-77.

Neale, Vanessa, Sotillo, Javier, Seymour, Jamie E., and Wilson, David (2017) The venom of the spine-bellied sea snake (Hydrophis curtus): proteome, toxin diversity and intraspecific variation. International Journal of Molecular Sciences, 18 (12).

Cortés, Alba, Sotillo, Javier, Muñoz-Antolí, Carla, Martín-Grau, Carla, Esteban, J. Guillermo, and Toledo, Rafael (2016) Resistance against Echinostoma caproni (Trematoda) secondary infections in mice is not dependent on the ileal protein production. Journal of Proteomics, 140. pp. 37-47.

Cortés, Alba, Sotillo-Gallego, Javier, Muñoz-Antolí, Carla, Trelis, Maria, Esteban, J. Guillermo, and Toledo, Rafael (2016) Definitive host influences the proteomic profile of excretory/secretory products of the trematode Echinostoma caproni. Parasites & Vectors, 9. 185. pp. 1-10.

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Book Chapter

Karnaneedi, Shaymaviswanathan, Limviphuvadh, Vachiranee, Maurer-Stroh, Sebastian, and Lopata, Andreas L. (2024) De Novo Transcriptomic Analyses to Identify and Compare Allergens in Foods. In: Cabanillas, Beatriz, (ed.) Food Allergens: Methods and Protocols. Methods in Molecular Biology, 2717 . Humana Press, New York, NY, USA, pp. 351-365.

Sorenson, Alanna E., and Schaeffer, Patrick M. (2020) Electrophoretic mobility shift assays with GFP-tagged proteins (GFP-EMSA). In: Labrou, Nikolaos E., (ed.) Targeting Enzymes for Pharmaceutical Development. Methods in Molecular Biology, 2089 . Springer, New York, NY, USA, pp. 159-166.

Sorenson, Alanna E., and Schaeffer, Patrick M. (2020) High-throughput differential scanning fluorimetry of GFP-tagged proteins. In: Labrou, Nikolaos E., (ed.) Targeting Enzymes for Pharmaceutical Development. Methods in Molecular Biology, 2089 . Springer, New York, NY, USA, pp. 69-85.

Wilson, David, and Daly, Norelle L. (2018) Approaches to delineate disulfide connectivities in pharmaceutical peptides. In: Webb, Graham A., (ed.) Modern Magnetic Resonance. Springer International Publishing, Gewerbestrasse, Cham, Switzerland, pp. 2021-2034.

Thesis

Bourquin, Rebecca Ashleigh (2023) Development of a high-throughput HIV-1 integrase drug screening platform. Masters (Research) thesis, James Cook University.

Brunner, Ramona (2023) Investigating receptors and signalling pathways of coral settlement and metamorphosis using proteomics, transcriptomics and phylogenetics. PhD thesis, James Cook University.

Fingerhut, Legana C. H. W. (2022) Identifying antimicrobial peptides in genomes using machine learning. PhD thesis, James Cook University.