Article

Malerba, Martino E., Connolly, Sean R., and Heimann, Kirsten (2015) An experimentally validated nitrate–ammonium–phytoplankton model including effects of starvation length and ammonium inhibition on nitrate uptake. Ecological Modelling, 317. pp. 30-40.

Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, and Negri, Andrew P. (2015) Acute and additive toxicity of ten photosystem-II herbicides to seagrass. Scientific Reports, 5. 17443. pp. 1-11.

Unsworth, Richard K.F., Collier, Catherine J., Waycott, Michelle, McKenzie, Len J., and Cullen-Unsworth, Leanne C. (2015) A framework for the resilience of seagrass ecosystems. Marine Pollution Bulletin, 100 (1). pp. 34-46.

Cole, Andrew J., Angell, Alex R., De Nys, Rocky, and Paul, Nicholas A. (2015) Cyclical changes in biomass productivity and amino acid content of freshwater macroalgae following nitrogen manipulation. Algal Research, 12. pp. 477-486.

Caronni, Sarah, Bresciani, Alessia, Delaria, Maria Anna, Meloni, Federico, Navone, Augusto, Panzalis, Pieraugusto, Heimann, Kirsten, and Ceccherelli, Giulia (2015) Ecology of the benthic mucilage-forming microalga Chrysophaeum taylorii in the W Mediterranean Sea: substratum and depth preferences. Estuarine, Coastal and Shelf Science , 161. pp. 38-45.

Negri, Andrew P., Flores, Florita, Mercurio, Phil, Mueller, Jochen F., and Collier, Catherine J. (2015) Lethal and sub-lethal chronic effects of the herbicide diuron on seagrass. Aquatic Toxicology, 165. pp. 73-83.

Gosch, Björn J., Paul, Nicholas A., De Nys, Rocky, and Magnusson, Marie (2015) Spatial, seasonal, and within-plant variation in total fatty acid content and composition in the brown seaweeds Dictyota bartayresii and Dictyopteris australis (Dictyotales, Phaeophyceae). Journal of Applied Phycology, 27 (4). pp. 1607-1622.

Huerlimann, Roger, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2015) Phylogenetic analysis of nucleus-encoded acetyl-CoA carboxylases targeted at the cytosol and plastid of algae. PLoS ONE, 10 (7). e0131099. pp. 1-10.

Gosch, Björn J., Lawton, Rebecca J., Paul, Nicholas A., de Nys, Rocky, and Magnusson, Marie (2015) Environmental effects on growth and fatty acids in three isolates of Derbesia tenuissima (Bryopsidales, Chlorophyta). Algal Research, 9. pp. 82-93.

Ow, Y.X., Collier, C.J., and Uthicke, S. (2015) Responses of three tropical seagrass species to CO2 enrichment. Marine Biology, 162 (5). pp. 1005-1017.

Lawton, Rebecca J., Carl, Christina, de Nys, Rocky, and Paul, Nicholas A. (2015) Heritable variation in growth and biomass productivity in the clonal freshwater macroalga Oedogonium. Algal Research, 8. pp. 108-114.

Magnusson, Marie, Mata, Leonardo, Wang, Na, Zhao, Jian, de Nys, Rocky, and Paul, Nicholas A. (2015) Manipulating antioxidant content in macroalgae in intensive land-based cultivation systems for functional food applications. Algal Research, 8. pp. 153-160.

Kent, Megan, Welladsen, Heather M., Mangott, Arnold, and Li, Yan (2015) Nutritional evaluation of Australian microalgae as potential human health supplements. PLoS ONE, 10 (2). e0118985. pp. 1-14.

Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, Mercurio, Phil, O'Brien, Jake, Ralph, Peter J., and Negri, Andrew P. (2015) A miniature bioassay for testing the acute phytotoxicity of Photosystem II herbicides on seagrass. PLoS ONE, 10 (2). e0117541. pp. 1-17.

Roberts, David A., Paul, Nicholas A., Dworjanyn, Symon A., Hu, Yi, Bird, Michael I., and de Nys, Rocky (2015) Gracilaria waste biomass (sampah rumput laut) as a bioresource for selenium biosorption. Journal of Applied Phycology, 27 (1). pp. 611-620.

Gosch, Björn J., Paul, Nicholas A., de Nys, Rocky, and Magnusson, Marie (2015) Seasonal and within-plant variation in fatty acid content and composition in the brown seaweed Spatoglossum macrodontum (Dictyotales, Phaeophyceae). Journal of Applied Phycology, 27 (1). pp. 387-398.

Gao, Zhengquan, Meng, Chunxiao, Chen, Yi Chung, Ahmed, Faruq, Mangott, Arnold, Schenk, Peer M., and Li, Yan (2015) Comparison of astaxanthin accumulation and biosynthesis gene expression of three Haematococcus pluvialis strains upon salinity stress. Journal of Applied Phycology, 27 (5). pp. 1853-1860.

Ahmed, Faruq, Li, Yan, Fanning, Kent, Netzel, Michael, and Schenk, Peer M. (2015) Effect of drying, storage temperature and air exposure on astaxanthin stability from Haematococcus pluvialis. Food Research International, 74. pp. 231-236.

Velu, Chinnathambi, Cirés, Samuel, Alvarez-Roa, Carlos, and Heimann, Kirsten (2015) First outdoor cultivation of the N2-fixing cyanobacterium Tolypothrix sp. in low-cost suspension and biofilm systems in tropical Australia. Journal of Applied Phycology, 27 (5). pp. 1743-1753.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2015) Indirect and direct effects of salinity on the quantity and quality of total amino acids in Ulva ohnoi (Chlorophyta). Journal of Phycology, 51 (3). pp. 536-545.

Islam, Muhammad Aminul, Brown, Richard J., Brooks, P.R., Jahirul, M.I., Bockhorn, H., and Heimann, Kirsten (2015) Investigation of the effects of the fatty acid profile on fuel properties using a multi-criteria decision analysis. Energy Conversion and Management, 98. pp. 340-347.

Lawton, Rebecca J., de Nys, Rocky, Magnusson, Marie E., and Paul, Nicholas A. (2015) The effect of salinity on the biomass productivity, protein and lipid composition of a freshwater macroalga. Algal Research, 12. pp. 213-220.

Cole, Andrew J., Mata, Leonardo, Paul, Nicholas A., and De Nys, Rocky (2014) Using CO₂ to enhance carbon capture and biomass applications of freshwater macroalgae. GCB Bioenergy, 6. pp. 637-645.

Kohli, Gurjeet S., Murray, Shauna A., Neilan, Brett A., Rhodes, Lesley L., Harwood, D. Tim, Smith, Kirsty F., Meyer, Lauren, Capper, Angela, Brett, Steve, and Hallegraeff, Gustaaf M. (2014) High abundance of the potentially maitotoxic dinoflagellate Gambierdiscus carpenteri in temperate waters of New South Wales, Australia. Harmful Algae, 39. pp. 134-145.

Murray, Shauna, Momigliano, Paolo, Heimann, Kirsten, and Blair, David (2014) Molecular phylogenetics and morphology of Gambierdiscus yasumotoi from tropical eastern Australia. Harmful Algae, 39. pp. 242-252.

Cirés, Samuel, Alvarez-Roa, Carlos, Wood, Susanna A., Puddick, Jonathan, Loza, Virginia, and Heimann, Kirsten (2014) First report of microcystin-producing Fischerella sp. (Stigonematales, Cyanobacteria) in tropical Australia. Toxicon, 88. pp. 62-66.

Magnusson, Marie, Mata, Leonardo, De Nys, Rocky, and Paul, Nicholas (2014) Biomass, lipid and fatty acid production in large-scale cultures of the marine macroalga Derbesia tenuissima (Chlorophyta). Marine Biotechnology, 16 (4). pp. 456-464.

Collier, C.J., and Waycott, M. (2014) Temperature extremes reduce seagrass growth and induce mortality. Marine Pollution Bulletin, 83 (2). pp. 483-490.

Welladsen, Heather, Kent, Megan, Mangott, Arnold, and Li, Yan (2014) Shelf-life assessment of microalgae concentrates: effect of cold preservation on microalgal nutrition profiles. Aquaculture, 430. pp. 241-247.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall, Jerry, Dean R., and Heimann, Kirsten (2014) The effect of nitrogen limitation on acetyl-CoA carboxylase expression and fatty acid content in Chromera velia and Isochrysis aff. galbana (TISO). Gene, 543 (2). pp. 204-211.

Carl, Christina, de Nys, Rocky, and Paul, Nicholas A. (2014) The seeding and cultivation of a tropical species of filamentous ulva for algal biomass production. PLoS ONE, 9 (6). e98700. pp. 1-9.

Ellison, Michael B., de Nys, Rocky, Paul, Nicholas A., and Roberts, David A. (2014) Growth and metal bioconcentration by conspecific freshwater macroalgae cultured in industrial waste water. PeerJ, 2. e401. pp. 1-17.

Carl, Christina, de Nys, Rocky, Lawton, Rebecca J., and Paul, Nicholas A. (2014) Methods for the induction of reproduction in a tropical species of filamentous Ulva. PLoS ONE, 9 (5). e97396. pp. 1-10.

Collier, Catherine J., Villacorta-Rath, Cecilia, van Dijk, Kor-jent, Takahashi, Miwa, and Waycott, Michelle (2014) Seagrass proliferation precedes mortality during hypo-salinity events: a stress-induced morphometric response. PLoS ONE, 9 (4). e94014. pp. 1-11.

Lawton, Rebecca J., de Nys, Rocky, Skinner , Stephen, and Paul, Nicholas A. (2014) Isolation and identification of Oedogonium species and strains for biomass applications. PLoS ONE, 9 (3). e90223. pp. 1-9.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2014) Variation in amino acid content and its relationship to nitrogen content and growth rate in Ulva ohnoi (Chlorophyta). Journal of Phycology, 50 (1). pp. 216-226.

Paul, Nicholas A., Svensson, Carl Johan, de Nys, Rocky, and Steinberg, Peter D. (2014) Simple growth patterns can create complex trajectories for the ontogeny of constitutive chemical defences in seaweeds. PLoS ONE, 9 (1). e86893. pp. 1-10.

Ahmed, Faruq, Fanning, Kent, Netzel, Michael, Turner, Warwick, Li, Yan, and Schenk, Peer M. (2014) Profiling of carotenoids and antioxidant capacity of microalgae from subtropical coastal and brackish waters. Food Chemistry, 165. pp. 300-306.

Sharma, Kalpesh, Li, Yan, and Schenk, Peer M. (2014) UV-C-mediated lipid induction and settling, a step change towards economical microalgal biodiesel production. Green Chemistry, 2014 (7). pp. 1-10.

Li, Yan, Naghdi, Forough Ghasemi, Garg, Sourabh, Adarme-Vega, Tania Catalina, Thurecht, Kristofer J., Ghafor, Wael Abdul, Tannock, Simon, and Schenk, Peer M. (2014) A comparative study: the impact of different lipid extraction methods on current microalgal lipid research. Microbial Cell Factories, 13. 14. pp. 1-9.

de Paula Silva, Pedro H., Paul, Nicholas A., de Nys, Rocky, and Mata, Leonardo (2013) Enhanced production of green tide algal biomass through additional carbon supply. PLoS ONE, 8 (12). e81164. pp. 1-7.

Roberts, David A., de Nys, Rocky, and Paul, Nicholas A. (2013) The effect of CO2 on algal growth in industrial waste water for bioenergy and bioremediation applications. PLoS ONE, 8 (11). e81631. pp. 1-12.

Momigliano, Paolo, Sparrow, Leanne, Blair, David, and Heimann, Kirsten (2013) The diversity of Coolia spp. (Dinophyceae Ostreopsidaceae) in the central Great Barrier Reef region. PLoS ONE, 8 (10). e799278. pp. 1-11.

York, Paul H., Gruber, Renee K., Hill, Ross, Ralph, Peter J., Booth, David J., and Macreadie, Peter I. (2013) Physiological and morphological responses of the temperate seagrass Zostera muelleri to multiple stressors: investigating the interactive effects of light and temperature. PLoS ONE, 8 (10). e76377. pp. 1-12.

Lawton, Rebecca J., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2013) Algal bioremediation of waste waters from land-based aquaculture using Ulva: selecting target species and strains. PLoS ONE, 8 (10). e77344. pp. 1-10.

Flores, Florita, Collier, Catherine J., Mercurio, Philip, and Negri, Andrew P. (2013) Phytotoxicity of four photosystem II herbicides to tropical seagrasses. PLoS ONE, 8 (9). e75798. pp. 1-12.

Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2013) Pesticide contamination and phytotoxicity of sediment interstitial water to tropical benthic microalgae. Water Research, 47 (14). pp. 5211-5221.

Sharma, Kalpesh K., Garb, Sourabh, Li, Yan, Malekizadeh, Ali, and Schenk, Peer M. (2013) Critical analysis of current microalgae dewatering techniques. Biofuels, 4 (4). pp. 397-407.

McMahon, Kathryn, Collier, Catherine, and Lavery, Paul S. (2013) Identifying robust bioindicators of light stress in seagrasses: a meta-analysis. Ecological Indicators, 30. pp. 7-15.

Lawton, Rebecca J., de Nys, Rocky, and Paul, Nicholas (2013) Selecting reliable and robust freshwater macroalgae for biomass applications. PLoS ONE, 8 (5). e64168. pp. 1-7.

Li, Y., Moore, R.B., Qin, J.G., Scott, A., and Ball, A.S. (2013) Extractable liquid, its energy and hydrocarbon content in the green alga Botryococcus braunii. Biomass & Bioenergy, 52. pp. 103-112.

Gao, Zhengquan, Meng, Chunxiao, Gao, Hongzheng, Li, Yan, Zhang, Xiaowen, Xu, Dong, Zhou, Shitan, Liu, Banghui, Su, Yuanfeng, and Ye, Naihao (2013) Carotenoid genes transcriptional regulation for astaxanthin accumulation in fresh water unicellular alga Haematococcus pluvialis by gibberellin A3 (GA3). Indian Journal of Biochemistry and Biophysics, 50 (6). pp. 548-553.

Song, Liang, Qin, Jian G., Clarke, Stephen, and Li, Yan (2013) Competition and succession between the oily alga Botryococcus braunii and two green algae Chlorella vulgaris and Chlamydomonas reinhardtii. Journal of Applied Phycology, 25 (3). pp. 847-853.

Huerlimann, Roger, and Heimann, Kirsten (2013) Comprehensive guide to acetyl-carboxylases in algae. Critical reviews in Biotechnology, 33 (1). pp. 49-65.

Petrou, K., Jimenez-Denness, I., Chartrand, K., McCormack, C., Rasheed, Michael, and Ralph, P. J. (2013) Seasonal heterogeneity in the photophysiological response to air exposure in two tropical intertidal seagrass species. Marine Ecology Progress Series, 482. pp. 93-106.

Li, Yan, Mangott, Arnold, Grierson, Scott, and Schenk, Peer M. (2013) Thinking outside of the box: potential of zooplankton for microalgae harvesting. Biofuels, 4 (3). pp. 263-266.

Gosch, Björn J., Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2012) Total lipid and fatty acid composition of seaweeds for the selection of species for oil-based biofuel and bioproducts. GCB Bioenergy, 4 (6). pp. 919-930.

Adarme-Vega, T. Catalina, Lim, David K.Y., Timmins, Matthew, Vernen, Felicitas, Li, Yan, and Schenk, Peer M. (2012) Microalgal biofactories: a promising approach towards sustainable omega-3 fatty acid production. Microbial Cell Factories, 11 (July). 96. pp. 1-10.

Garg, Sourabh, Li, Yan, Wang, Liguang, and Schenk, Peer M. (2012) Flotation of marine microalgae: effect of algal hydrophobicity. Bioresource Technology, 121. pp. 471-474.

Lim, David K.Y., Gard, Sourabh, Timmins, Matthew, Zhang, Eugene S.B., Thomas-Hall, Skye R., Schuhmann, Holger, Li, Yan, and Schenk, Peer M. (2012) Isolation and evaluation of oil-producing microalgae from subtropical coastal and brackish waters. PLoS ONE, 7 (7). e40751. pp. 1-13.

Duong, Van Thang, Li, Yan, Nowak, Ekaterina, and Schenk, Peer M. (2012) Microalgae isolation and selection for prospective biodiesel production. Energies, 5 (6). pp. 1835-1849.

Mata, Leonardo, Gaspar, Helena, and Santos, Rui (2012) Carbon/nutrient balance in relation to biomass production and halogenated compound content in the red alga Asparagopsis taxiformis (Bonnemaisoniaceae). Journal of Phycology, 48 (1). pp. 248-253.

Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2012) Chronic herbicide exposures affect the sensitivity and community structure of tropical benthic microalgae. Marine Pollution Bulletin, 65 (4-9). pp. 363-372.

Li, Yan, Moheimani, Navid Reza, and Schenk, Peer M. (2012) Current research and perspectives of microalgal biofuels in Australia. Biofuels, 3 (4). pp. 427-439.

Angell, Alex R., Pirozzi, Igor, de Nys, Rocky, and Paul, Nicholas A. (2012) Feeding preferences and the nutritional value of tropical algae for the abalone Haliotis asinina. PLoS ONE, 7 (6). e388547. pp. 1-10.

Boldt, Lynda, Yellowlees, David, and Leggat, William (2012) Hyperdiversity of genes encoding integral light-harvesting proteins in the dinoflagellate Symbiodinium sp. PLoS ONE, 7 (10). e47456. pp. 1-13.

Collier, C.J., Waycott, M., and McKenzie, L.J. (2012) Light thresholds derived from seagrass loss in the coastal zone of the northern Great Barrier Reef, Australia. Ecological Indicators, 23. pp. 211-219.

Collier, Catherine J., Waycott, Michelle, and Ospina, Ana Giraldo (2012) Responses of four Indo-West Pacific seagrass species to shading. Marine Pollution Bulletin, 65 (4-9). pp. 342-354.

Saunders, Richard J., Paul, Nicholas A., Hu, Yi, and de Nys, Rocky (2012) Sustainable sources of biomass for bioremediation of heavy metals in waste water derived from coal-fired power generation. PLoS ONE, 7 (5). e36470. pp. 1-8.

Unsworth, Richard K.F., Collier, Catherine J., Henderson, Gideon M., and McKenzie, Len J. (2012) Tropical seagrass meadows modify seawater carbon chemistry: implications for coral reefs impacted by ocean acidification. Environmental Research Letters, 7 (2). pp. 1-9.

Mata, Leonardo , Gaspar, Helena, Justino, Fátima, and Santos, Rui (2011) Effects of hydrogen peroxide on the content of major volatile halogenated compounds in the red alga Asparagopsis taxiformis (Bonnemaisoniaceae). Journal of Applied Phycology, 23 (5). pp. 827-832.

Prado, Patricia, Collier, Catherine J., Romero, Javier, and Alcoverro, Teresa (2011) Distinctive types of leaf tissue damage influence nutrient supply to growing tissues within seagrass shoots. Marine Biology, 158 (7). pp. 1473-1482.

Collier, Catherine J., Uthicke, Sven, and Waycott, Michelle (2011) Thermal tolerance of two seagrass species at contrasting light levels: Implications for future distribution in the Great Barrier Reef. Limnology and Oceanography, 56 (6). pp. 2200-2210.

Magnusson, Marie, Heimann, Kirsten, Quayle, Pamela, and Negri, Andrew P. (2010) Additive toxicity of herbicide mixtures and comparative sensitivity of tropical benthic microalgae. Marine Pollution Bulletin, 60 (11). pp. 1978-1987.

Huerlimann, Roger, De Nys, Rocky, and Heimann, Kirsten (2010) Growth, lipid content, productivity, and fatty acid composition of tropical microalgae for scale-up production. Biotechnology and Bioengineering, 107 (2). pp. 245-257.

Mata, Leonardo, Schuenhoff, Andreas, and Santos, Rui (2010) A direct comparison of the performance of the seaweed biofilters, Asparagopsis armata and Ulva rigida. Journal of Applied Phycology, 22 (5). pp. 639-644.

Van Dijk, Jent Kornelis, and van Tussenbroek, Brigitta I. (2010) Clonal diversity and structure related to habitat of the marine angiosperm Thalassia testudinum along the Atlantic coast of Mexico. Aquatic Botany, 92 (1). pp. 63-69.

Jarvis, Jessie C., and Moore, Kenneth A. (2010) The role of seedlings and seed bank viability in the recovery of Chesapeake Bay, USA, Zostera marina populations following a large-scale decline. Hydrobiologia, 649 (1). pp. 55-68.

Heimann, Kirsten, Klerks, Paul L., and Hasenstein, Karl H. (2009) Involvement of actin and microtubules in regulation of bioluminescence and translocation of chloroplasts in the dinoflagellate Pyrocystis lunula. Botanica Marina, 52 (2). pp. 170-177.

Collier, Catherine J., Lavery, Paul S., Ralph, Peter J., and Masini, Raymond J. (2009) Shade-induced response and recovery of the seagrass Posidonia sinuosa. Journal of Experimental Marine Biology and Ecology, 370 (1-2). pp. 89-103.

Chartrand, Kathryn M., Durako, Michael Joseph, and Blum, James E. (2009) Effect of hyposalinity on the photophysiology of Siderastrea radians. Marine Biology, 156. pp. 1691-1702.

Figueroa, Félix L., Bueno, Agustín, Korbee, Nathalie, Santos, Rui, Mata, Leonardo, and Schuenhoff, Andreas (2008) Accumulation of mycosporine-like amino acids in Asparagopsis armata grown in tanks with fishpond effluents of gilthead sea bream, Sparus aurata. Journal of the World Aquaculture Society, 39 (5). pp. 692-699.

Collier, Catherine J., Lavery, Paul S., Ralph, Peter J., and Masini, Raymond J. (2008) Physiological characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series, 353. pp. 65-79.

van Tussenbroek, Brigitta I., Barba Santos, M. Guadalupe, Van Dijk, Jent Kornelis, Sanabria Alcaraz, S.N. Marisela, and Téllez Calderón, M. Lourdes (2008) Selective elimination of rooted plants from a tropical seagrass bed in a back-reef lagoon: a hypothesis tested by hurricane Wilma (2005). Journal of Coastal Research, 24 (1). pp. 278-281.

Glibert, PM, Azanza, R, Burford, M, Furuya, K, Abal, E, Al-Azri, A, Al-Yamani, F, Andersen, P, Anderson, DM, Beardall, J, Berg, GM, Brand, L, Bronk, D, Brookes, J, Burkholder, J-AM, Cembella, A, Cochlan, WP, Collier, JL, Collos, Y, Diaz, D, Doblin, M, Drennen, T, Dyhrman, S, Fukuyo, Y, Furnas, M, Galloway, J, Graneli, E, Ha, DV, Hallegraeff, G, Harrison, J, Harrison, PJ, Heil, CA, Heimann, Kirsten, Howarth, R, Jauzein, C, Kana, AA, Kana, TM, Kim, H, Kudela, R, Legrand, C, Mallin, M, Mulholland, M, Murray, S, ONeil, Judith, Pitcher, G, Qi, Y, Rabalais, N, Raine, R, Seitzinger, S, Salomon, PS, Solomon, C, Stoecker, DK, Usup, G, Wilson, J, Yin, K, Zhou, M, and Zhu, M (2008) Ocean urea fertilization for carbon credits poses high ecological risks. Marine Pollution Bulletin, 56 (6). pp. 1049-1056.

Zhang, Hua, Leung, Yolanda, Louden, Daniel, de Nys, Rocky, and Lamb, Robert (2008) The potential intrinsic and extrinsic toxicity of silica nanoparticles and its impact on marine organisms. NANO, 3 (4). pp. 271-278.

Brandini, Frederico Pereira, da Silva, Ariel Scheffer, da Silva, Eduardo Teixeira, and Kolm, Hedda (2007) Sources of nutrients and seasonal dynamics of chlorophyll in the inner shelf off Paraná State-South Brazil Bight. Journal of Coastal Research, 23 (5). pp. 1131-1140.

Gottschalk, S, Uthicke, S, and Heimann, Kirsten (2007) Benthic diatom community composition in three regions of the Great Barrier Reef, Australia. Coral Reefs, 26 (2). pp. 345-357.

Collier, Catherine J., Lavery, Paul S., Masini, Raymond J., and Ralph, Peter J. (2007) Morphological, growth and meadow characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series, 337. pp. 103-115.

van Tussenbroek, Brigitta I., and van Dijk, Jent Kornelis (2007) Spatial and temporal variability in biomass and production of psammophytic Halimeda incrassata (Bryopsidales, Chlorophyta) in a Caribbean reef lagoon. Journal of Phycology, 43 (1). pp. 69-77.

Van Dijk, Jent Kornelis, Waycott, Michelle, van Tussenbroek, Brigitta I., and Ouborg, Joop (2007) Polymorphic microsatellite markers for the Caribbean seagrass Thalassia testudinum Banks ex König. Molecular Ecology Notes, 7 (1). pp. 89-91.

Mackey, Paul, Collier, Catherine J., and Lavery, Paul S. (2007) Effects of experimental reduction of light availability on the seagrass Amphibolis griffithi. Marine Ecology Progress Series, 342. pp. 117-126.

van Tussenbroek, Brigitta I., Barba Santos, M. Guadalupe, and van Dijk, Jent Kornelis (2006) Unusual synchronous spawning by green algae (Bryopsidales), after the passage of Hurricane Wilma (2005). Botanica Marina, 49 (3). pp. 270-271.

Paul, Nicholas A., Cole, Louise, de Nys, Rocky, and Steinberg, Peter D. (2006) Ultrastructure of the gland cells of the red alga Asparagopsis armata (Bonnemaisoniaceae). Journal of Phycology, 42 (3). pp. 637-645.

Qin, Jian G., and Li, Yan (2006) Optimization of the growth environment of Botryococcus braunii Strain CHN 357. Journal of Freshwater Ecology, 21 (1). pp. 169-176.

Li, Yan, and Qin, Jian G. (2005) Comparison of growth and lipid content in three Botryococcus braunii strains. Journal of Applied Phycology, 17 (6). pp. 551-556.

Schaffelke, Britta, and Deane, David (2005) Desiccation tolerance of the introduced marine green alga Codium fragile ssp. Tomentosoides - clues for likely transport vectors. Biological Invasions, 7 (4). pp. 577-587.

Capper, Angela, Tibbetts, Ian R., O’Neil, Judith M., and Shaw, Glendon R. (2005) The fate of Lyngbya majuscula toxins in three potential consumers. Journal of Chemical Ecology, 31 (7). pp. 1595-1606.

Diaz-Pulido, Guillermo, and McCook, Laurence J. (2005) Effects of nutrient enhancement on the fecundity of a coral reef macroalga. Journal of Experimental Marine Biology and Ecology, 317 (1). pp. 13-24.

Mellors, Jane, Waycott, Michelle, and Marsh, Helene (2005) Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. Marine Pollution Bulletin, 51 (1). pp. 335-342.

Schaffelke, Britta, Mellors, Jane, and Duke, Norman C. (2005) Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities. Marine Pollution Bulletin, 51 (1-4). pp. 279-296.

Schaffelke, Britta, Heimann, Kirsten, Marshall, Paul A, and Ayling, A.M. (2004) Blooms of Chrysocystis fragilis on the Great Barrier Reef. Coral Reefs, 23 (4). p. 514.

Diaz-Pulido, Guillermo, and McCook, Laurence J (2004) Effects of live coral, epilithic algal communities and substrate type on algal recruitment. Coral Reefs, 23 (2). pp. 225-233.

Diaz-Pulido, Guillermo, and McCook, Laurence J. (2003) Relative roles of herbivory and nutrients in the recruitment of coral-reef seaweeds. Ecology, 84 (8). pp. 2026-2033.

Trevena, Anne J., Jones, Graham B., Wright, Simon W., and van den Enden, Rick L. (2003) Profiles of dimethylsulphoniopropionate (DMSP), algal pigments, nutrients, and salinity in the fast ice of Prydz Bay, Antarctica. Journal of Geophysical Research: oceans, 108 (C5). 14. pp. 1-11.

Craig, J.M., Klerks, Paul, Heimann, Kirsten R.M., and Waits, J.L. (2003) Effects of salinity, pH and temperature on the re-establishment of bioluminescence and copper or SDS toxicity in the marine dinoflagellate Pyrocystis lunula using bioluminescence as an endpoint. Environmental Pollution, 125 (2). pp. 267-275.

Saker, Martin L., and Griffiths, Dilwyn J. (2001) Occurrence of blooms of the cyanobacterium Cylindrospermopsis raciborskii (Woloszynska) Seenayya and Subba Raju in a north Queensland domestic water supply. Marine and Freshwater Research, 52 (6). pp. 907-915.

Lind, Jan L., Heimann, Kirsten, Miller, Elizabeth A., van Vliet, Catherine, Hoogenraad, Nicholas J., and Wetherbee, Richard (1997) Substratum adhesion and gliding in a diatom are mediated by extracellular proteoglycans. Planta, 203 (2). pp. 213-221.

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Book Chapter

Heimann, Kirsten, and Sparrow, Leanne (2015) Ciguatera: Tropical Reef Fish Poisoning. In: Kim, Se-Kwon, (ed.) Handbook of Marine Microalgae: Biotechnolgy Advances. Academic Press, London, UK, pp. 547-558.

Heimann, Kirsten, and Huerlimann, Roger (2015) Microalgal classification: major classes and genera of commercial microalgal species. In: Kim, Se-Kwon, (ed.) Handbook of Marine Microalgae: Biotechnolgy Advances. Academic Press, London, UK, pp. 25-41.

Heimann, Kirsten, and Cirés, Samuel (2015) N2-fixing cyanobacteria: ecology and biotechnological applications. In: Kim, Se-Kwon, (ed.) Handbook of Marine Microalgae: Biotechnolgy Advances. Academic Press, London, UK, pp. 501-515.

Ahmed, Faruq, Li, Yan, and Schenk, Peer M. (2012) Algal biorefinery: sustainable production of biofuels and aquaculture feed? In: Gordon, Richard, and Seckbach, Joseph, (eds.) The Science of Algal Fuels: phycology, geology, biophotonics, genomics and nanotechnology. Cellular Origin, Life in Extreme Habitats and Astrobiology, 25 . Springer, Dordrecht, the Netherlands, pp. 21-41.

Heimann, Kirsten (2012) Gymnodinium and related dinoflagellates. In: UNSPECIFIED, (ed.) Encyclopedia of Life Sciences (eLS). Wiley-Blackwell, pp. 1-17.

Li, Y., Qin, J.G., Ball, A.S., and Moore, R.B. (2009) Perspectives on marine phytoplankton as sources of nutrition an bioenergy. In: Kersey, William T., and Munger, Samuel P., (eds.) Marine Phytoplankton. Oceanography and Ocean Engineering Series . Nova Science, Hauppage, New York, USA, pp. 187-203.

Heimann, Kirsten, Hansen, Gert, and Roberts, Keith R. (2001) Gymnodinium. In: UNSPECIFIED, (ed.) Encyclopedia of Life Sciences. John Wiley & Sons.

Report

Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

Collier, Catherine, and Waycott, Michelle (2009) Drivers of Change to Seagrass Distributions and Communities on the Great Barrier Reef: literature review and gaps analysis. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Garrard, Samantha, Heimann, Kirsten, and Blair, David (2008) Assessment of the Threat of Toxic Microalgal Species to the Great Barrier Reef World Heritage Area: a literature review. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Conference Item

Heimann, Kirsten, and Huerlimann, Roger (2015) The benefits and advantages of commercial algal biomass harvesting. In: Proceedings of the Biosafety and the Environmental Uses of Micro-Organisms Conference. pp. 73-92. From: OECD Conference on the Environmental Uses of Micro-organisms, 26-27 March 2012, Paris, France.

Berner, Florian, Heimann, Kirsten, and Sheehan, Madoc (2015) A perfused membrane biofilm reactor for microalgae cultivation in tropical conditions. In: Proceedings of the 16th Asia Pacific Confederation of Chemical Engineering Congress (2015) 3133047. pp. 291-301. From: APCChE 2015: 16th Asia Pacific Confederation of Chemical Engineering Congress, 27 September - 1 October 2015, Melbourne, VIC, Australia.

Islam, Muhammad Aminul, Brown, Richard, Dowell, Ashley, Eickhoff, Wilhelm, Heimann, Kirsten, von Alvensleben, Nicolas, and Brookes, Peter (2014) Evaluation of a pilot-scale oil extraction from microalgae for biodiesel production. In: Journal of Environmental Science (3) From: ICERE 2014: International Conference on Environment and Renewable Energy, 7-8 May 2014, Paris, France.

McKenzie, Len, Collier, Catherine, Waycott, Michelle, Unsworth, Richard, Yoshida, Rudi, and Smith, Naomi (2012) Monitoring inshore seagrasses of the GBR and responses to water quality. In: Proceedings of the 12th International Coral Reef Symposium. 15B_4. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Magnusson, Marie, Heimann, Kirsten, Negri, Andrew, and Ridd, Michael (2007) Comparative effects of herbicides on photosynthesis and growth of the tropical microalga Nephroselmis pyriformis. In: Journal of Phycology. p. 53. From: Phycological Society of America / International Society of Protistologists Meeting 2007, 5-10 August 2007, Providence, Rhode Island, USA.

Messer, Tracey, and Jegatheesan, Veeriah (2003) Application of floating medium filters for aquaculture wastewater treatment. In: Proceedings of the Ozwater Convention & Exhibition 2003. From: Ozwater Convention & Exhibition 2003, 6-10 April 2003, Perth, WA, Australia.

Jegatheesan, V., and Manicom, C. (2003) Sustainable aquaculture through water recycling. In: Proceedings of the First International Symposium on Southeast Asian Water Environment. From: First International Symposium on Southeast Asian Water Environment, 23-25 October 2003, Bangkok, Thailand.

Thesis

Subashchandrabose, Gobalakrishnan (2019) Generating and evaluating salinity and temperature resilient cyanobacteria for tropical outdoor cultivation in Australia. PhD thesis, James Cook University.

Sparrow, Leanne (2017) Key factors influencing the occurrence and frequency of ciguatera. PhD thesis, James Cook University.

Ow, Yan Xiang (2016) Interactive effects of ocean acidification and declining water quality on tropical seagrass physiology. PhD thesis, James Cook University.

Berner, Florian (2015) Assessment & design of perfused microalgal biofilm cultivation processes. PhD thesis, James Cook University.

Wilkinson, Adam David (2015) Development of a miniature seagrass bioassay for PSII herbicides and its application to mixtures and simultaneous stressors. Masters (Research) thesis, James Cook University.

Malerba, Martino Edoardo (2015) Extending quota models to nitrogen-limited growth of phytoplankton populations. PhD thesis, James Cook University.

Gosch, Björn Jürgen (2015) Oil content and quality in tropical seaweeds. PhD thesis, James Cook University.

Harrington, Lindsay Mortan (2004) Ecology of crustose coralline algae; interactions with scleractinian corals and responses to environmental conditions. PhD thesis, James Cook University.