A

Arthur, Jonathan W., Cheung, Florence S.G., and Reichardt, Juergen K.V. (2015) Single nucleotide differences (SNDs) continue to contaminate the dbSNP database with consequences for human genomics and health. Human Mutation, 36 (2). pp. 196-199.

Andrews, T.D., Whittle, B., Field, M.A., Balakishnan, B., Zhang, Y., Shao, Y., Cho, V., Kirk, M., Singh, M., Xia, Y., Hager, J., Winslade, S., Sjollema, G., Beutler, B., Enders, A., and Goodnow, C.C. (2012) Massively parallel sequencing of the mouse exome to accurately identify rare, induced mutations: an immediate source for thousands of new mouse models. Open Biology, 2 (5). 120061. pp. 1-16.

A'Hara, S.W., Amouroux, P., Argo, Emily E., Avand-Faghih, A., Barat, Ashoktaru, Barbieri, Luiz, Bert, Theresa M., Blatrix, R., Blin, Aurélie, Bouktila, D., Broome, A., Burban, C., Capdevielle-Dulac, C., Casse, N., Chandra, Suresh, Cho, Kyung Jin, Cottrell, J.E., Crawford, Charles R., Davis, Michelle C., Delatte, H., Desneux, Nicholas, Djieto-Lordon, C., Dubois, M.P., El-Mergawy, R.A.A.M., Gallardo-Escárate, C., Garcia, M., Gardner, Mary M., Guillemaud, Thomas, Haye, P.A., Hellemans, B., Hinrichsen, P., Jeon, Ji Hyun, Kerdelhué, C., Kharrat, I., Kim, Ki Hwan, Kim, Yong Yul, Kwan, Ye-Seul, Labbe, Ellen M., LaHood, Eric, Lee, Kyung Mi, Lee, Wan-Ok, Lee, Yat-Hung, Legoff, Isabelle, Li, H., Lin, Chung-Ping, Liu, S.S., Liu, Y.G., Long, D., Maes, G.E., Magnoux, E., Mahanta, Prabin Chnadra Mahanta, Makni, H., Makni, M., Malausa, Thibaut, Matura, Rakesh, McKey, D., McMillen-Jackson, Anne L., Méndez, M.A., Mezghani-Khemakhem, M., Michel, Andy P., Moran, Paul, Muriel-Cunha, Janice, Nibouche, S., Normand, F., Palkovacs, Eric P., Pande, Veena, Parmentier, K., Peccoud, J., Paitscheck, F., Puchulutegui, Cecilia, Ramos, R., Ravest, G., Richner, Heinz, Robbens, J., Rochat, D., Rousselet, J., Saladin, Verena, Sauve, M., Schlei, Ora, Schultz, Thomas F., Scobie, A.R., Segovia, N.I., Seyoum, Seifu, Silvain, J-F., Tabone, Elisabeth, Van Houdt, J.K.J., Van Damme, S.G., Volckaert, F.A.M., Wenburg, John, Willis, Theodore V., Won, Yong-Jin, Ye, N.H., Zhang, W., and Zhang, Y.X. (2012) Permanent genetic resources added to Molecular Ecology Resources Database 1 August 2011-30 September 2011. Molecular Ecology Resources, 12 (1). pp. 185-189.

Albertin, Caroline B., Bonnaud, Laure, Brown, C. Titus, Crookes-Goodson, Wendy J., da Fonseca, Rute R., Di Cristo, Carlo, Dilkes, Brian P., Edsinger-Gonzales, Eric, Freeman, Robert M., Hanlon, Roger T., Koenig, Kristen M., Lindgren, Annie R., Martindale, Mark Q., Minx, Patrick, Moroz, Leonid L., Noedl, Marie-Therese, Nyholm, Spencer V., Ogura, Atsushi, Pungor, Judit R., Rosenthal, Joshua J.C., Schwarz, Erich M., Shigeno, Shuichi, Strugnell, Jan M., Wollesen, Tim, Zhang, Guojie, and Ragsdale, Clifton W. (2012) Cephalopod genomics: a plan of strategies and organization. Standards in Genomic Sciences, 7 (1). pp. 175-188.

Anderson, Cynthia M., Aparicio, Gallego J., Atangana, Alain R., Beaulieu, Jean, Bruford, M.W., Cain, Forrest, Campos, T., Cariani, A., Carvalho, M.A., Chen, Nan, Chen, P.P., Clamens, A-L., Clark, Ann M., Coeur D'Acier, A., Connolly, Paul, Cordero-Rivera, Adolfo, Coughlan, James P., Cross, Thomas S., David, Bruno, De Bruyn, Colin, De Meyer, M., De Ridder, Chantal, Delatte, H., Dettori, M.T., Downer, S.J., Dubreuil, Christine, Evans, K.J., Fan, Bin, Ferrara, G., Gagné, André, Gaillard, Maria, Gigliarelli, L., Giovinazzi, J., Gomez, D.R., Grünwald, N.J., Hansson, Bengt, Huotari, T., Jank, L., Jousselin, E., Jungmann, L., Kaczmarek, M.E., Khasa, Damase P., Kneebone, Jeff, Korpelainen, H., Kostamo, K., Lanfaloni, L., Lin, Haoran, Liu, Xiaochun, Lucentini, L., Maes, G.E., Mahaffee, W.F., Meng, Zining, Micali, S., Milano, I., Mok, H.F., Morin, L., Neill, T.M., Newton, Craig H., Ostrow, D. Gigi, Palomba, A., Panara, F., Puletti, M.E., Quarta, R., Quilici, S., Ramos, A.K.B., Rigaud, Thierry, Risterucci, A.M., Salomon, Matthew P., Sánchez-Guillén, Rosa A., Sarver, Shane K., Sequeira, A.S., Sforça, D.A., Simiand, C., Smith, Brian, Sousa, A.C.B., Souza, A.P., Stepien, C.C., Stuckert, A.J., Sulikowski, James, Tayeh, A., Tinti, F., Tsang, Paul C.W., Van Houdt, J.K.J., Vendramin, E., Verde, I., Virgilio, M., Wang, Huan L., Wang, Le, Wattier, Rémi A., Wellenreuther, Maren, Xie, Cong X., Zane, L., Zhang, Xiu J., Zhang, Yong, Zhuang, Zhimeng, and Zucchi, M.I. (2010) Permanent Genetic Resources added to Molecular Ecology Resources Database 1 December 2009–31 January 2010. Molecular Ecology Resources, 10 (3). pp. 576-579.

B

Buerger, Patrick (2017) Viruses: contributors to and mitigators of black band disease in corals. PhD thesis, James Cook University.

Bochow, Shaun (2016) Characterisation of Cherax quadricarinatus densovirus: the first virus characterised from Australian freshwater crayfish. PhD thesis, James Cook University.

Brozynska, Marta, Omar, Ernnie Syafika, Furtado, Agnelo, Crayn, Darren, Simon, Bryan, Ishikawa, Ryuji, and Henry, Robert James (2014) Chloroplast genome of novel rice germplasm identified in Northern Australia. Tropical Plant Biology, 7 (3). pp. 111-120.

Botté, Emmanuelle S., Smith-Keune, Carolyn, and Jerry, Dean R. (2013) Temperature: a prolonged confounding factor on cholinesterase activity in the tropical reef fish Acanthochromis polyacanthus. Aquatic Toxicology, 140-141. pp. 337-339.

Bergmann, Hannes, Yabas, Mehmet, Short, Alanna, Miosge, Lisa, Barthel, Nadine, Teh, Charis E., Roots, Carla M., Bull, Katherine R., Jeelall, Yogesh, Horikawa, Keisuke, Whittle, Belinda, Balakishnan, Bhavani, Sjollema, Geoff, Bertram, Edward M., Mackay, Fabienne, Rimmer, Andrew J., Cornall, Richard J., Field, Matthew A., Andrews, T. Daniel, Goodnow, Christopher C., and Enders, Anselm (2013) B cell survival, surface BCR and BAFFR expression, CD74 metabolism, and CD8⁻ dendritic cells require the intramembrane endopeptidase SPPL2A. The Journal of Experimental Medicine, 210 (1). pp. 31-40.

Botté, E.S., Jerry, D.R., King, S. Codi, Smith-Keune, C., and Negri, A.P. (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393.

Bainbridge, Zoe T., Wolanski, Eric, Alvarez Romero, Jorge, Lewis, Stephen E., and Brodie, Jon E. (2012) Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 236-248.

Bignell, C.W., Malau-Aduli, A.E.O., Nichols, P.D., McCulloch, R., and Kijas, J.W. (2010) East Friesian sheep carry a Myostatin allele known to cause muscle hypertrophy in other breeds. Animal Genetics, 41 (4). pp. 445-446.

Bay, Line K., Nielsen, H. Bjørn, Jarmer, Hanne, Seneca, Francois, and van Oppen, Madeleine J.H. (2009) Transcriptomic variation in a coral reveals pathways of clonal organisation. Marine Genomics, 2 (2). pp. 119-125.

C

Czarnecki, Peter G., Gabriel, George C., Manning, Danielle K., Sergeev, Mikhail, Lemke, Kristi, Klena, Nikolai T., Liu, Xiaoqin, Chen, Yu, Li, You, Agustin, Jovenal T. San, Garnaas, Maija K., Francis, Richard J., Tobita, Kimimasa, Goessling, Wolfram, Pazour, Gregory J., Lo, Cecilia W., Beier, David R., and Shah, Jagesh V. (2015) ANKS6 is the critical activator of NEK8 kinase in embryonic situs determination and organ patterning. Nature Communications, 6. 6023.

Cooper, T., Furtado, A., Henry, R.J., and Crayn, D. (2015) Analysis of the chloroplast genome of a coffee relative from northern Australia. Acta Horticulturae, XXIX. pp. 177-182.

Cantacessi, Cinzia, Seddon, Jennifer M., Miller, Terrence L., Leow, Chiuan Yee, Thomas, Laëtitia, Mason, Lyndel, Willis, Charlene, Walker, Giselle, Loukas, Alex, Gasser, Robin B., Jones, Malcolm K., and Hofmann, Andreas (2013) A genome-wide analysis of annexins from parasitic organisms and their vectors. Scientific Reports, 3. 2893. pp. 1-8.

Cantacessi, Cinzia, Mulvenna, Jason, Young, Neil D., Kasny, Martin, Horak, Petr, Aziz, Ammar, Hofmann, Andreas, Loukas, Alex, and Gasser, Robin B. (2012) A deep exploration of the transcriptome and "excretory/secretory" proteome of adult Fascioloides magna. Molecular and Cellular Proteomics, 11 (11). pp. 1340-1353.

Cantacessi, Cinzia, Campbell, Bronwyn E., and Gasser, Robin B. (2012) Key strongylid nematodes of animals: impact of next-generation transcriptomics on systems biology and biotechnology. Biotechnology Advances, 30 (3). pp. 469-488.

Cantacessi, C., Campbell, B.E., Jex, A.R., Young, N.D., Hall, R.S., Ranganathan, S., and Gasser, R.B. (2012) Bioinformatics meets parasitology. Parasite Immunology, 34 (5). pp. 265-275.

Cantacessi, Cinzia, Gasser, Robin B., Strube, Christina, Schnieder, Thomas, Jex, Aaron R., Hall, Ross S., Campbell, Bronwyn E., Young, Neil D., Ranganathan, Shoba, Sternberg, Paul W., and Mitreva, Makedonka (2011) Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention. Biotechnology Advances, 29 (3). pp. 261-271.

Cantacessi, Cinzia, Young, Neil D., Nejsum, Peter, Jex, Aaron R., Campbell, Bronwyn E., Hall, Ross S., Thamsborg, Stig M., Scheerlinck, Jean-Peirre, and Gasser, Robin B. (2011) The transcriptome of Trichuris suis: first molecular insights into a parasite with curative properties for key immune diseases of humans. PLoS ONE, 6 (8). e23590. pp. 1-10.

Cantacessi, Cinzia, Mitreva, Makedonka, Campbell, Bronwyn E., Hall, Ross S., Young , Neil D., Jex, Aaron R., Ranganathan, Shoba, and Gasser, Robin B. (2010) First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach. Infection, Genetics and Evolution, 10 (8). pp. 1199-1207.

Coppe, Alessandro, Pujolar, Jose Martin, Maes, Gregory E., Larsen, Peter F., Hansen, Michael M., Bernatchez, Louis, Zane, Lorenzo, and Bortoluzzi, Stefania (2010) Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel. BMC Genomics, 11. 635. pp. 1-13.

Cantacessi, Cinzia, Jex, Aaron R., Hall, Ross S., Young, Neil D., Campbell, Bronwyn E., Joachim, Anja, Nolan, Matthew J., Abubucker, Sahar, Sternberg, Paul W., Ranganatha, Shoba, Mitreva , Makedonka, and Gasser, Robin B. (2010) A practical, bioinformatic workflow system for large datasets generated by next-generation sequencing. Nucleic Acids Research, 38 (17). e171. pp. 1-12.

Cantacessi, C., Zou, F.C., Hall, R.S., Zhong, W., Jex, A.R., Campbell, B.E., Ranganathan, S., Sternberg, P.W., Zhu, X.Q., and Gasser, R.B. (2009) Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. Molecular and Cellular Probes, 23 (5). pp. 205-217.

Cheun, Carol C., Martin, Ian C.A., Zenger, Kyall R., Donald, Jenny A., Thomson, Peter C., Moran, Christopher, and Buckley, Michael F. (2004) Quantitative trait loci for steady-state platelet count in mice. Mammalian Genome, 15 (10). pp. 784-797.

D

Dunkerton, Sophie, Field, Matthew, Cho, Vicki, Bertram, Edward, Whittle, Belinda, Groves, Alexandra, and Goel, Himanshu (2015) A de novo Mutation in KMT2A (MLL) in monozygotic twins with Wiedemann–Steiner Syndrome. American Journal of Medical Genetics: Part A, 167 (9). pp. 2182-2187.

Damerla, Rama Rao, Cui, Cheng, Gabriel, George C., Liu, Xiaoqin, Craige, Branch, Gibbs, Brian C., Francis, Richard, Li, You, Chatterjee, Bishwanath, San Agustin, Jovenal T., Eguether, Thibaut, Subramanian, Ramiah, Witman, George B., Michaud, Jacques L., Pazour, Gregory J., and Lo, Cecilia W. (2015) Novel Jbts17 mutant mouse model of Joubert syndrome with cilia transition zone defects and cerebellar and other ciliopathy related anomalies. Human Molecular Genetics, 24 (14). pp. 3994-4005.

Diopere, Eveline, Maes, Gregory E., Komen, Hans, Volckaert, Filip A.M., and Groenen, Martien A.M. (2014) A genetic linkage map of sole (Solea solea): a tool for evolutionary and comparative analyses of exploited (flat) fishes. PLoS ONE, 9 (12). e115040. pp. 1-16.

Dixon, Groves B., Bay, Line K., and Matz, Mikhail V. (2014) Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora. BMC Genomics, 15. 1103. pp. 1-11.

Damerla, Rama Rao, Chatterjee, Bishwanath, Li, You, Francis, Richard J.B., Fatakia, Sarosh N., and Lo, Cecilia W. (2014) Ion Torrent sequencing for conducting genome-wide scans for mutation mapping analysis. Mammalian Genome, 25 (3-4). pp. 120-128.

Daley, Stephen R., Coakley, Kristen M., Hu, Daniel Y., Randall, Katrina L., Jenne, Craig N., Limnander, Andre, Myers, Darienne R., Polakos, Noelle K., Enders, Anselm, Roots, Carla, Balakishnan, Bhavani, Miosge, Lisa A., Sjollema, Geoff, Bertram, Edward M., Field, Matthew A., Shao, Yunli, Andrews, T. Daniel, Whittle, Belinda, Barnes, S. Whitney, Walker, John R., Cyster, Jason G., Goodnow, Christopher C., and Roose, Jeroen P. (2013) Rasgrp1 mutation increases naïve T-cell CD44 expression and drives mTOR-dependent accumulation of Helios⁺ T cells and autoantibodies. eLife, 2. e01020. pp. 1-26.

Duplessis, Sébastien, Cuomo, Christina A., Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L., Hacquard, Stéphane, Amselem, Joëlle, Cantarel, Brandi L., Chiu, Readman, Coutinho, Pedro M., Feau, Nicolas, Field, Matt, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G., Kodira, Chinnappa D., Kohler, Annegret, Kües, Ursula, Lindquist, Erika A., Lucas, Susan M., Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L., Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A., Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A., Henrissat, Bernard, Van de Peer, Yves, Rouzé, Pierre, Ellis, Jeffrey G., Dodds, Peter N., Schein, Jacqueline E., Zhong, Shaobin, Hamelin, Richard C., Grigoriev, Igor V., Szabo, Les J., and Martin, Francis (2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences, 108 (22). pp. 9166-9171.

E

Ellyard, Julia I., Jerjen, Rebekka, Martin, Jaime L., Lee, Adrian Y.S., Field, Matthew A., Jiang, Simon H., Cappello, Jean, Naumann, Svenja K., Andrews, T. Daniel, Scott, Hamish S., Casarotto, Marco G., Goodnow, Christopher C., Chaitow, Jeffrey, Pascual, Virginia, Hertzog, Paul, Alexander, Stephen I., Cook, Matthew C., and Vinuesa, Carola G. (2014) Identification of a pathogenic variant in TREX1 in early-onset cerebral systemic lupus erythematosus by whole-exome sequencing. Arthritis & Rheumatism, 66 (12). pp. 3382-3386.

Enders, Anselm, Short, Alanna, Miosge, Lisa A., Bergmann, Hannes, Sontani, Yovina, Bertram, Edward M., Whittle, Belinda, Balakishnan, Bhavani, Yoshida, Kaoru, Sjollema, Geoff, Field, Matthew A., Andrews, T. Daniel, Hagiwara, Hiromi, and Goodnow, Christopher C. (2014) Zinc-finger protein ZFP318 is essential for expression of IgD, the alternatively spliced Igh product made by mature B lymphocytes. Proceedings of the National Academy of Sciences, 111 (12). pp. 4513-4518.

Eguether, Thibaut, San Agustin, Jovenal T., Keady, Brian T., Jonassen, Julie A., Liang, Yinwen, Francis, Richard, Tobita, Kimimasa, Johnson, Colin A., Abdelhamed, Zakia A., Lo, Cecilia W., and Pazour, Gregory J. (2014) IFT27 links the BBSome to IFT for maintenance of the ciliary signaling compartment. Developmental Cell, 31 (3). pp. 279-290.

F

Field, Matthew A., Cho, Vicky, Andrews, T. Daniel, and Goodnow, Chris C. (2015) Reliably detecting clinically important variants requires both combined variant calls and optimized filtering strategies. PLoS ONE, 10 (11). e0143199. pp. 1-19.

Field, Matthew A., Cho, Vicky, Cook, Matthew C., Enders, Anselm, Vinuesa, Carola G., Whittle, Belinda, Andrews, T. Daniel, and Goodnow, Chris C. (2015) Reducing the search space for causal genetic variants with VASP. Bioinformatics, 31 (14). pp. 2377-2379.

Firth, Cadhla, Bhat, Meera, Firth, Matthew A., Williams, Simon H., Frye, Matthew J., Simmonds, Peter, Conte, Juliette M., Ng, James, Garcia, Joel, Bhuva, Nishit P., Lee, Bohyun, Che, Xiaoyu, Quan, Phenix-Lan, and Lipkin, W. Ian (2014) Detection of zoonotic pathogens and characterization of novel viruses carried by commensal Rattus norvegicus in New York City. mBio, 5 (5). e01933-14.

Firth, Cadhla, and Lipkin, W. Ian (2013) The Genomics of Emerging Pathogens. Annual Review of Genomics and Human Genetics, 14. pp. 281-300.

Forêt, Sylvain, Knack, Brent, Houliston, Evelyn, Momose, Tsuyoshi, Manuel, Michael, Quéinnec, Eric, Hayward, David C., Ball, Eldon E., and Miller, David J. (2010) New tricks with old genes: the genetic bases of novel cnidarian traits. Trends in Genetics, 26 (4). pp. 154-158.

G

Geraylou, Zahra, Souffreau, Caroline, Rurangwa, Eugene, Maes, Gregory E., Spanier, Katina I., Courtin, Christophe M., Delcour, Jan A., Buyse, Johan, and Ollevier, Frans (2013) Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing. FEMS Microbiology Ecology, 86 (2). pp. 357-371.

Gasser, Robin, and Cantacessi, Cinzia (2011) Heartworm genomics: unprecedented opportunities for fundamental molecular insights and new intervention strategies. Topics in Companion Animal Medicine, 26 (4). pp. 193-199.

Gasser, Robin B., Cantacessi, Cinzia, Campbell, Bronwyn E., Hofmann, Andreas, and Otranto, Domenico (2011) Major prospects for exploring canine vector-borne diseases and novel intervention methods using 'omic technologies. Parasites & Vectors, 4 (April). 53. pp. 1-10.

H

Hall, Nathan E., Hanzak, Jan, Allcock, A. Louise, Cooke, Ira R., Ogura, Atsushi, and Strugnell, Jan M. (2016) The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27 (1). pp. 5-6.

Hamada, Mayuko, Shoguchi, Eiichi, Shinzato, Chuya, Kawashima, Takeshi, Miller, David J., and Satoh, Nori (2013) The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Molecular Biology and Evolution, 30 (1). pp. 167-176.

Helyar, Sarah J., Limborg, Morten T., Bekkevold, Dorte, Babbucci, Massimiliano, van Houdt, Jeroen, Maes, Gregory E., Bargelloni, Luca, Nielsen, Rasmus O., Taylor, Martin I., Ogden, Rob, Cariani, Alessia, Carvalho, Gary R., Consortium, FishPopTrace, and Panitz, Frank (2012) SNP discovery using next generation transcriptomic sequencing in Atlantic herring (Clupea harengus). PLoS ONE, 7 (8). e42089. pp. 1-11.

Helyar, S.J., Hemmer-Hansen, J., Bekkevold, D., Taylor, M.I., Ogden, R., Limborg, M.T., Cariani, A., Maes, G.E., Diopere, E., Carvalho, G.R., and Nielsen, E.E. (2011) Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Molecular Ecology Resources, 11 (S1). pp. 123-136.

Heimann, Kirsten, and Katsaros, Christos (2009) Algal cell biology and genomics. Botanica Marina, 52. pp. 93-94.

Hawken, R.J., Cavanagh, J.A.L., Meadows, J.R.S., Khatkar, M.S., Husaini, Y., Zenger, K.R., McClintock, S., McClintock, A.E., and Raadsma, H.W. (2006) Whole-genome amplification of DNA extracted from cattle semen samples. Journal of Dairy Science, 89 (6). pp. 2217-2221.

J

Jayasinghearachchi, Himali S., Corea, Enoka M., Krishnananthasivam, Shivankari, Sathkumara, Harindra D., Francis, Vaithehi R., Abeysekere, Thimirangi R., and De Silva, Aruna Dharshan (2019) Whole-genome sequences of eight clinical isolates of Burkholderia pseudomallei from melioidosis patients in Eastern Sri Lanka. Microbiology Resource Announcements, 8 (33). e0064519-19.

Johar, Angad S., Anaya, Juan-Manuel, Andrews, Dan, Patel, Hardip R., Field, Matthew, Goodnow, Chris, and Arcos-Burgos, Mauricio (2015) Candidate gene discovery in autoimmunity by using extreme phenotypes, next generation sequencing and whole exome capture. Autoimmunity Reviews, 14 (3). pp. 204-209.

Johar, Angad S., Mastronardi, Claudio, Rojas-Villarraga, Adriana, Patel, Hardip R., Chuah, Aaron, Peng, Kaiman, Higgins, Angela, Milburn, Peter, Palmer, Stephanie, Silva-Lara, Maria Fernanda, Velez, Jorge I., Andrews, Dan, Field, Matthew, Huttley, Gavin, Goodnow, Chris, Anaya, Juan-Manuel, and Arcos-Burgos, Mauricio (2015) Novel and rare functional genomic variants in multiple autoimmune syndrome and Sjögren's syndrome. Journal of Translational Medicine, 13 (173). pp. 1-11.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2013) A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection. BMC Genomics, 14. 810. pp. 1-18.

Jostins, Luke, Ripke, Stephan, Weersma, Rinse K., Duerr, Richard H., McGovern, Dermot P., Hui, Ken Y., Lee, James C., Schumm, L. Philip, Sharma, Yashoda, Anderson, Carl A., Essers, Jonah, Mitrovic, Mitja, Ning, Kaida, Cleynen, Isabelle, Theatre, Emilie, Spain, Sarah L., Raychaudhuri, Soumya, Goyette, Philippe, Wei, Zhi, Abraham, Clara, Achkar, Jean-Paul, Ahmad, Tariq, Amininejad, Leila, Ananthakrishnan, Ashwin N., Andersen, Vibeke, Andrews, Jane M., Baidoo, Leonard, Balschun, Tobias, Bampton, Peter A., Bitton, Alain, Boucher, Gabrielle, Brand, Stephan, Buening, Carsten, Cohain, Ariella, Cichon, Sven, D'Amato, Mauro, De Jong, Dirk, Devaney, Kathy L., Dubinsky, Marla, Edwards, Cathryn, Ellinghaus, David, Ferguson, Lynnette R., Franchimont, Denis, Fransen, Karin, Gearry, Richard, Georges, Michel, Gieger, Christian, Glas, Juergen, Haritunians, Talin, Hart, Ailsa, Hawkey, Chris, Hedl, Matija, Hu, Xinli, Karlsen, Tom H., Kupcinskas, Limas, Kugathasan, Subra, Latiano, Anna, Laukens, Debby, Lawrance, Ian C., Lees, Charlie W., Louis, Edouard, Mahy, Gillian, Mansfield, John, Morgan, Angharad R., Mowat, Craig, Newman, William, Palmieri, Orazio, Ponsioen, Cyriel Y., Potocnik, Uros, Prescott, Natalie J., Regueiro, Miguel, Rotter, Jerome I., Russell, Richard K., Sanderson, Jeremy D., Sans, Miquel, Satsangi, Jack, Schreiber, Stefan, Simms, Lisa A., Sventoraityte, Jurgita, Targan, Stephan R., Taylor, Kent D., Tremelling, Mark, Verspaget, Hein W., De Vos, Martine, Wijmenga, Cisca, Wilson, David C., Winkelmann, Juliane, Xavier, Ramnik J., Zeissig, Sebastian, Zhang, Bin, Zhang, Clarence K., Zhao, Hongyu, The International IBD Genetics Consortium, (IIBDGC), Silverberg, Mark S., Annese, Vito, Hakonarson, Hakon, Brant, Steven R., Radford-Smith, Graham, Mathew, Christopher G., Rioux, John D., Schadt, Eric E., Daly, Mark J., Franke, Andre, Parkes, Miles, Vermeire, Severine, Barrett, Jeffrey C., and Cho, Judy H. (2012) Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature, 491 (7422). pp. 119-124.

Jones, D.B., Zenger, K.R., and Jerry, D.R. (2011) In silico whole-genome EST analysis reveals 2322 novel microsatellites for the silver-lipped pearl oyster, Pinctada maxima. Marine Genomics, 4 (4). pp. 287-290.

Jex, Aaron R., Liu, Shiping, Li, Bo, Young, Neil D., Hall, Ross S., Li, Yingrui, Yang, Lifeng, Zeng, Na, Xu, Xun, Xiong, Zijun, Chen, Fangyuan, Wu, Xuan, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Anderson, Garry A., Harris, Todd W., Campbell, Bronwyn E., Vlaminck, Johnny, Wang, Tao, Cantacessi, Cinzia, Schwarz, Erich M., Ranganathan, Shoba, Geldhof, Peter, Nejsum, Peter, Sternberg, Paul W., Yang, Huanming, Wang, Jun, Wang, Jian, and Gasser, Robin B. (2011) Ascaris suum draft genome. Nature, 479. pp. 529-533.

Jex, Aaron R., Smith, Huw V., Nolan, Matthew J., Campbell, Bronwyn E., Young , Neil D., Cantacessi, Cinzia, and Gasser, Robin B. (2011) Cryptic parasite revealed: improved prospects for treatment and control of human cryptosporidiosis through advanced technologies. In: Rollinson, D., and Hay, S.I., (eds.) Advances in Parasitology. Elsevier, pp. 141-173.

Jordan, Margaret Agnes (2011) Dissecting the genetics of autoimmune diseases. PhD thesis, James Cook University.

K

Kashani, Arash, Holman, Benjamin William Behrens, and Malau-Aduli, Aduli Enoch Othniel (2017) Single nucleotide polymorphisms of the ovine ADRB3 gene in crossbred Australian sheep supplemented with spirulina (Arthrospira platensis) cyanobacterial microalgae. Biomedical Journal of Scientific and Technical Research, 1 (2).

Kashani, Arash, Holman, Benjamin William Behrens, Nichols, Peter David, and Malau-Aduli, Aduli Enoch Othniel (2015) Effect of dietary supplementation with Spirulina on the expressions of AANAT, ADRB3, BTG2 and FASN genes in the subcutaneous adipose and Longissimus dorsi muscle tissues of purebred and crossbred Australian sheep. Journal of Animal Science and Technology, 57 (8). pp. 1-8.

Komatsu, Masanori, Sato, Yoichi, Negami, Tatsuki, Terada, Tohru, Sasaki, Osamu, Yasuda, Jumpei, Arakawa, Aisaku, Yoshida, Chikara, Takahashi, Hideaki, Malau-Aduli, Aduli E.O., Suzuki, Keiichi, and Shimizu, Kentaro (2015) Overdominance effect of the bovine ghrelin receptor (GHSR1a)-DelR242 locus on growth in Japanese Shorthorn weaner bulls: heterozygote advantage in bull selection and molecular mechanisms. G3 Genes Genomes Genetics, 5 (2). pp. 271-279.

Komatsu, Masanori, Sato, Yoichi, Fujimori, Yuki, Itoh, Tomohito, Satoh, Masahiro, Nishio, Motohide, Sasaki, Osamu, Takahashi, Hideaki, and Malau-Aduli, Aduli E.O. (2014) Bovine-specific nucleotide polymorphisms and mRNA expression of the growth hormone secretagogue receptor 1a (GHSR1a) gene and its genetic association with growth and carcass traits. Journal of Molecular and Genetic Medicine, 8 (2). pp. 1-5.

Kashani, Arash, and Malau-Aduli, Aduli Enoch Othniel (2014) Real-time PCR and real-time RT-PCR applications in food labelling and gene expression studies. International Journal of Genetics and Genomics, 2 (1). pp. 6-12.

Komatsu, Masanori, Fujimori, Yuki, Itoh, Tomohito, Sato, Yoichi, Okamura, Hiroaki, Nishio, Motohide, Sasaki, Osamu, Malau-aduli, Aduli E.O., Takahashi, Hideaki, Takeda, Hisato, and Satoh, Masahiro (2012) Nucleotide polymorphisms, transcriptional analysis, gene expression of the bovine growth hormone secretagogue receptor 1a (GHS-R1a) gene and its genetic association with growth and carcass traits in cattle. In: Yamada, Hiromasa, and Takahashi, Kintaro, (eds.) Ghrelin: production, action mechanisms and physiological effects. Physiology: laboratory and clinical research . Nova Science Publishers, New York, NY, USA, pp. 1-31.

Kordi-Tamandani, Dor Mohammad, Ladies, Mohammad Ayub Rigi, Hashemi, Mohammad, Moazeni-Roodi, Abdul-Karim, Krishna, Smriti, and Torkamanzehi, Adam (2012) Analysis of p15ⁱⁿᵏ⁴ᵇ and p16ⁱⁿᵏ⁴ᵃ gene methylation in patients with oral squamous cell carcinoma. Biochemical Genetics, 50 (5-6). pp. 448-453.

Komatsu, Masanori, Itoh, Tomohito, Fujimori, Yuki, Satoh, Masahiro, Miyazaki, Yoshiyuki, Takahashi, Hideaki, Shimizu, Kazuhiro, Malau-Aduli, Aduli E.O., and Morita, Mitsuo (2011) Genetic association between GHSR1a 5'UTR-microsatellite and nt-7(C>A) loci and growth and carcass traits in Japanese Black cattle. Animal Science Journal, 82 (3). pp. 396-405.

Kapoor, Amit, Simmonds, Peter, Gerold, Gisa, Qaisar, Natasha, Jain, Komal, Henriquez, Jose A., Firth, Cadhla, Hirschberg, David L., Rice, Charles M., Shields, Shelly, and Lipkin, W. Ian (2011) Characterization of a canine homolog of hepatitis C virus. Proceedings of the National Academy of Sciences of the United States of America, 108 (28). pp. 11608-11613.

Komatsu, Masanori, Fujimori, Yuki, Sato, Yoichi, Okamura, Hiroaki, Sasaki, Seiki, Itoh, Tomohito, Morita, Mitsuo, Nakamura, Ryoichi, Oe, Toshiaki, Furuta, Masako, Yasuda, Junpei, Kojima, Takatoshi, Watanabe, Toshio, Hayashi, Takeshi, Malau-Aduli, Aduli E.O., and Takahashi, Hideaki (2010) Nucleotide polymorphisms and the 5'-UTR transcriptional analysis of the bovine growth hormone secretagogue receptor 1a (GHSR1a) gene. Animal Science Journal, 81 (5). pp. 530-550.

Krzywinski, Martin, Bosdet, Ian, Mathewson, Carrie, Wye, Natasja, Brebner, Jay, Chiu, Readman, Corbett, Richard, Field, Matthew, Lee, Darlene, Pugh, Trevor, Volik, Stas, Siddiqui, Asim, Jones, Steven, Schein, Jacquie, Collins, Collin, and Marra, Marco (2007) A BAC clone fingerprinting approach to the detection of human genome rearrangements. Genome Biology, 8 (10). R224. pp. 1-17.

Khatkar, Mehar S., Zenger, Kyall R., Hobbs, Matthew, Hawken, Rachel J., Cavanagh, Julie A.L., Barris, Wes, McClintock, Alexander E., McClintock, Sara, Thomson, Peter C., Tier, Bruce, Nicholas, Frank W., and Raadsma, Herman W. (2007) A primary assembly of a Bovine Haplotype Block Map based on a 15,036-Single-Nucleotide Polymorphism Panel genotyped in Holstein–Friesian Cattle. Genetics, 176. pp. 763-772.

Khatkar, M.S., Zenger, K.R., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Thomson, P.C., Nicholas, F.W., Tier, B., and Raadsma, H.W. (2007) Extent of linkage disequilibrium and haplotype blocks in bovine genome using high density SNP markers. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 215-218. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Khatkar, Mehar S., Collins, Andrew, Cavanagh, Julie A.L., Hawken, Rachel J., Hobbs, Matthew, Zenger, Kyall R., Barris, Wes, McClintock, Alexander E., Thomson, Peter C., Nicholas, Frank W., and Raadsma, Herman W. (2006) A first-generation metric linkage disequilibrium map of bovine chromosome 6. Genetics, 174. pp. 79-85.

L

Lin, Mei-Fang (2016) Corallimorpharian transcriptomes and their use to understand phylogeny and symbiosis in the Hexacorallia. PhD thesis, James Cook University.

Li, You, Klena, Nikolai T., Gabriel, George C., Liu, Xiaoqin, Kim, Andrew J., Lemke, Kristi, Chen, Yu, Chatterjee, Bishwanath, Devine, William, Damerla, Rama Rao, Chang, Chienfu, Yagi, Hisato, San Agustin, Jovenal T., Thahir, Mohamed, Anderton, Shane, Lawhead, Caroline, Vescovi, Anita, Pratt, Herbert, Morgan, Judy, Haynes, Leslie, Smith, Cynthia L., Eppig, Janan T., Reinholdt, Laura, Francis, Richard, Leatherbury, Linda, Ganapathiraju, Madhavi K., Tobita, Kimimasa, Pazour, Gregory J., and Lo, Cecilia W. (2015) Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Nature, 521 (7553). pp. 520-524.

Lee, Cindy Eunhee, Fulcher, David A., Whittle, Belinda, Chand, Rochna, Fewings, Nicole, Field, Matthew, Andrews, Daniel, Goodnow, Christopher C., and Cook, Matthew C. (2014) Autosomal-dominant B-cell deficiency with alopecia due to a mutation in NFKB2 that results in nonprocessable p100. Blood, 124 (19). pp. 2964-2972.

Liu, Xiaoqin, Francis, Richard, Kim, Andrew J., Ramirez, Ricardo, Chen, Guozhen, Subramanian, Ramiah, Anderton, Shane, Kim, Youngsil, Wong, Liyin, Morgan, Judy, Pratt, Herbert C., Reinholdt, Laura, Devine, William, Leatherbury, Linda, Tobita, Kimimasa, and Lo, Cecilia W. (2014) Interrogating congenital heart defects with noninvasive fetal echocardiography in a mouse forward genetic screen. Circulation: Cardiovascular Imaging, 7 (1). pp. 31-42.

Luerce, Tessália Diniz, Galli, Vanessa, Cerqueira, Gustavo Maia, Simionatto, Simone, and Dellagostin, Odir Antônio (2009) An improved method for characterization of the mutation associated to porcine stress syndrome by PCR amplification followed by restriction analysis. Ciencia Rural, 39 (5). pp. 1577-1580.

M

Mehrian-Shai, Ruty, Novelli, Giuseppe, Vasiliou, Vasilis, Watt, Jessica, and Reichardt, Juergen (2020) Genomics of COVID-19: molecular mechanisms going from susceptibility to severity of the disease. Human Genomics, 14. 22.

Matley, Jordan Kyle (2017) Investigation of coral trout (Plectropomus spp.) movement patterns and resource use: a multidisciplinary approach using acoustic telemetry and dietary indicators. PhD thesis, James Cook University.

Malau-Aduli, Aduli Enoch Othniel, and Kashani, Arash (2015) Molecular genetics-nutrition interactions in the expression of AANAT, ADRB3, BTG2 and FASN genes in the heart, kidney and liver of Australian lambs supplemented with Spirulina (Arthrospira platensis). Genes & Genomics, 37 (7). pp. 633-644.

Malau-Aduli, Aduli E.O., and Holman, Benjamin W.B. (2015) Molecular genetics: nutrition interactions in ruminant fatty acid metabolism and meat quality. In: Khatib, Hasan, (ed.) Molecular and Quantitative Animal Genetics. Wiley-Blackwell, Hoboken, NJ, USA, pp. 197-214.

Miosge, Lisa A., Field, Matthew A. , Sontani, Yovina, Cho, Vicky, Johnson, Simon, Palkova, Anna, Balakishnan, Bhavani, Liang, Rong, Zhang, Yafei, Lyon, Stephen, Beutler, Bruce, Whittle, Belinda, Bertram, Edward M., Enders, Anselm, Goodnow, Christopher C., and Andrews, T. Daniel (2015) Comparison of predicted and actual consequences of missense mutations. Proceedings of the National Academy of Sciences of the United States of America, 112 (37). E5189-E5198.

Mangiola, Stefano, Young, Neil D., Korhonen, Pasi, Mondal, Alinda, Scheerlinck, Jean-Pierre, Sternberg, Paul W., Cantacessi, Cinzia, Hall, Ross S., Jex, Aaron R., and Gasser, Robin B. (2013) Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology. Biotechnology Advances, 31 (8). pp. 1109-1119.

Miller, T.L., and Adlard, R.D. (2013) Unicapsula species (Myxosporea: Trilosporidae) of Australian marine fishes, including the description of Unicapsula andersenae n. sp. in five teleost families off Queensland, Australia. Parasitology Research, 112 (8). pp. 2945-2957.

Moya, A., Ganot, P., Furla, P., and Sabourault, C. (2012) The transcriptomic response to thermal stress is immediate, transient and potentiated by ultraviolet radiation in the sea anemone Anemonia viridis. Molecular Ecology, 21 (5). pp. 1158-1174.

Morin, Ryan D., Mendez-Lago, Maria, Mungall, Andrew J., Goya, Rodrigo, Mungall, Karen L., Corbett, Richard D., Johnson, Nathalie A., Severson, Tesa M., Chiu, Readman, Field, Matthew, Jackman, Shaun, Krzywinski, Martin, Scott, David W., Trinh, Diane L., Tamura-Wells, Jessica, Li, Sa, Firme, Marlo R., Rogic, Sanja, Griffith, Malachi, Chan, Susanna, Yakovenko, Oleksandr, Meyer, Irmtraud M., Zhao, Eric Y., Smailus, Duane, Moksa, Michelle, Chittaranjan, Suganthi, Rimsza, Lisa, Brooks-Wilson, Angela, Spinelli, John J., Ben-Neriah, Susana, Meissner, Barbara, Woolcock, Bruce, Boyle, Merrill, McDonald, Helen, Tam, Angela, Zhao, Yongjun, Delaney, Allen, Zeng, Thomas, Tse, Kane, Butterfield, Yaron, Birol, Inanç, Holt, Rob, Schein, Jacqueline, Horsman, Douglas E., Moore, Richard, Jones, Steven J.M., Connors, Joseph M., Hirst, Martin, Gascoyne, Randy D., and Marra, Marco A. (2011) Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature, 476 (7360). pp. 298-303.

Miller, David J., and Ball, Eldon E. (2008) Cryptic complexity captured: the Nematostellar genome reveals its secrets. Trends in Genetics, 24 (1). pp. 1-4.

Malau-Aduli, A.E.O., Niibayashi, T., Kojima, T., Oshima, K., Mizoguchi, Y., and Komatsu, M. (2007) Detection and mapping of QTL on bovine chromosomes 2 and 5 segregating for live weight, average daily gain and body measurements in Japanese Black Cattle. Journal of Cell and Animal Biology, 1 (3). BA7F88410733. 034-043.

Margulies, Elliot H., Cooper, Gregory M., Asimenos, George, Thomas, Daryl J., Dewey, Colin N., Siepel, Adam, Birney, Ewan, Keefe, Damian, Schwartz, Ariel S., Hou, Minmei, Taylor, James, Nikolaev, Sergey, Montoya-Burgos, Juan I., Löytynoja, Ari, Whelan, Simon, Pardi, Fabio, Massingham, Tim, Brown, James B., Bickel, Peter, Holmes, Ian, Mullikin, James C., Ureta-Vidal, Abel, Paten, Benedict, Stone, Eric A., Rosenbloom, Kate R., Kent, W. James, Bouffard, G.G., Guan, X., Hansen, N.F., Idol, J.R., Maduro, V.V.B., Maskeri, B., McDowell, J.C., Park, M., Thomas, P.J., Young, A.C., Blakesley, R.W., Muzny, D.M., Sodergren, E., Wheeler, D.A., Worley, K.C., Jiang, H., Weinstock, G.M., Gibbs, R.A., Graves, T., Fulton, R., Mardis, E.R., Wilson, R.K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D.B., Chang, J.L., Lindblad-Toh, K., Lander, E.S., Hinrichs, A., Trumbower, H., Clawson, H., Zweig, A., Kuhn, R.M., Barber, G., Harte, R., Karolchik, D., Field, Matt, Moore, R.A., Matthewson, C.A., Schein, J.E., Marra, M.A., Antonarakis, Stylianos E., Batzoglou, Serafim, Goldman, Nick, Hardison, Ross, Haussler, David, Miller, Webb, Pachter, Lior, Green, Eric D., and Sidow, Arend (2007) Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research, 17 (6). pp. 760-774.

Macdonald, Anna J., Sankovic, Natasha, Sarr, Stephen D., Fitzsimmons, Nancy N., Wakefield, Matthew J., Marshall Graves, Jennifer A., and Zenger, Kyall R. (2006) Y chromosome microsatellite markers identified from the tammar wallaby (Macropus eugenii) and their amplification in three other macropod species. Molecular Ecology, 6 (4). pp. 1202-1204.

Malau-Aduli, Aduli Enoch Othniel, Niibayashi, Tomomi, Kojima, Takatoshi, Oshima, Kazunaga, Mizoguchi, Yaushi, and Komatsu, Masanori (2005) Interval mapping of growth quantitative trait loci in Japanese Black beef cattle using microsatellite DNA markers and half-sib regression analysis. Animal Science Journal, 76 (1). pp. 11-18.

Malau-Aduli, Aduli Enoch Othniel, Niibayashi, Tomomi, Kojima, Takatoshi, Oshima, Kazunaga, Mizoguchi, Yasushi, and Komatsu, Masanori (2005) Mapping the quantitative trait loci (QTL) for body shape and conformation measurements on BTA1 in Japanese Black cattle. Animal Science Journal, 76 (1). pp. 19-27.

Malau-Aduli, A.E.O., Nishimura-Abe, A., Niibayashi, T., Yasuda, Y., Kojima, T., Abe, S., Oshima, K, Hasegawa, K., and Komatsu, M. (2004) Mitochondrial DNA polymorphism, maternal lineage and correlations with postnatal growth of Japanese Black beef cattle to yearling age. Asian-Australasian Journal of Animal Sciences, 17 (11). pp. 1484-1490.

Malau-Aduli, Aduli Enoch Othniel, Niibayashi, Tomomi, Kojima, Takatoshi, Oshima, Kazunaga, and Komatsu, Masanori (2003) Genome-wide scanning for QTL: mapping methodology and detected QTL in cattle. Journal of Animal Genetics, 30 (2). pp. 3-16.

Miller, David J., Hayward, David C., Reece-Hoyes, John S., Scholten, Ingo, Catmull, Julian, Gehring, Walter J., Callaerts, Patrick, Larsen, Jill E., and Ball, Eldon E. (2000) Pax gene diversity in the basal cnidarian Acropora millepora (Cnidaria, Anthozoa): Implications for the evolution of the Pax gene family. Proceedings of the National Academy of Sciences of the United States of America, 97 (7). pp. 4475-4480.

Miller, David J., and Ball, Eldon E. (2000) The coral Acropora: what it can contribute to our knowledge of metazoan evolution and the evolution of developmental processes. BioEssays, 22 (3). pp. 291-296.

Miller, David, and Miles, Annabel (1993) Homeobox genes and the zootype. Nature, 365. pp. 215-216.

N

Nikolay, Birgit, Dupressoir, Anne, Firth, Cadhla, Faye, Ousmane, Boye, Cheik S., Diallo, Mawlouth, and Sall, Amadou A. (2013) Comparative full length genome sequence analysis of usutu virus isolates from Africa. Virology Journal, 10. 217.

P

Pujolar, J.M., Jacobsen, M.W., Als, T.D., Frydenberg, J., Munch, K., Jónsson, B., Jian, J.B., Cheng, L., Maes, G.E., Bernatchez, L., and Hansen, M.M. (2014) Genome-wide single-generation signatures of local selection in the panmictic European eel. Molecular Ecology, 23 (10). pp. 2514-2528.

Pujolar, J.M., Jacobsen, M.W., Als, T.D., Frydenberg, J., Magnussen, E., Jónsson, B., Jiang, X., Cheng, L., Bekkevold, D., Maes, G.E., Bernatchez, L., and Hansen, M.M. (2014) Assessing patterns of hybridization between North Atlantic eels using diagnostic single-nucleotide polymorphisms. Heredity, 112. pp. 627-637.

Pujolar, J.M., Jacobsen, M.W., Frydenberg, J., Als, T.D., Larsen, P.F., Maes, G.E., Zane, L., Jian, J.B., Cheng, L., and Hansen, M.M. (2013) A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel. Molecular Ecology Resources, 13 (4). pp. 706-714.

Pujolar, J.M., Milan, M., Marino, I.A.M., Capoccioni, F., Ciccotti, E., Belpaire, C., Covaci, A., Malarvannan, G., Patarnello, T., Bargelloni, L., Zane, L., and Maes, G.E. (2013) Detecting genome-wide gene transcription profiles associated with high pollution burden in the critically endangered European eel. Aquatic Toxicology, 132-133. pp. 157-164.

Price, Ian R. (2011) A taxonomic revision of the marine green algal genera Caulerpa and Caulerpella (Chlorophyta, Caulerpaceae) in northern (tropical and subtropical) Australia. Australian Systematic Botany, 24 (3). pp. 137-213.

R

Rocker, Melissa M. (2016) Effects of water quality on the health and condition of inshore corals. PhD thesis, James Cook University.

Robinson, Nick A., Hall, Nathan E., Ross, Elizabeth M., Cooke, Ira R., Shiel, Brett P., Robinson, Andrew J., and Strugnell, Jan M. (2016) The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27. pp. 437-438.

Ramos-Silva, Paula, Kaandorp, Jaap, Huisman, Lotte, Marie, Benjamin, Zanella-Cléon, Isabelle, Guichard, Nathalie, Miller, David J., and Marin, Frédéric (2013) The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Molecular Biology and Evolution, 30 (9). pp. 2099-2112.

Renfree, Marilyn B., Papenfuss, Anthony T., Deakin, Janine E., Lindsay, James, Heider, Thomas, Belov, Katherine, Rens, Willem, Waters, Paul D., Pharo, Elizabeth A., Shaw, Geoff, Wong, Emily S.W., Lefèvre, Christopher P., Nicholas, Kevin R., Kuroki, Yoko, Wakefield, Matthew J., Zenger, Kyall R., Wang, Chenwei , Ferguson-Smith, Malcolm, Nicholas, Frank W., Hickford, Danielle, Yu, Hongshi, Short, Kirsty R., Siddle, Hannah V., Frankenberg, Stephen R., Chew, Keng Y., Menzies, Brandon R., Stringer, Jessica M., Suzuki, Shunsuke, Hore, Timothy A., Delbridge, Margaret L., Mohammadi, Amir, Schneider, Nanette Y., Hu, Yanqiu, O'Hara, William, Al Nadaf, Shafagh , Wu, Chen, Feng, Zhi-Ping, Cocks, Benjamin G., Wang, Jianghui, Flicek, Paul, Searle, Stephen M.J., Fairley, Susan, Beal, Kathryn, Herrero, Javier, Carone, Dawn M., Suzuki, Yutaka, Kondo, Shinji, Nishida, Yuichiro, Tatsumoto, Shoji, Mandiou, Ion, Hsu, Arthur, McColl, Kaighin A., Lansdell, Benjamin, Weinstock, George, Kuczek, Elizabeth, McGrath, Annette, Wilson, Peter, Men, Artem , Hazar-Rethinam, Mehlika, Hall, Allison, Davis, John, Wood, David, Williams, Sarah, Sundaravadanam, Yogi, Muzny, Donna M., Jhangiani, Shalini N., Lewis, Lora R., Morgan, Margaret B., Okwuonu, Geoffrey O., Ruiz, San J., Santibanez, Jireh, Nazareth, Lynne, Cree, Andrew, Fowler, Gerard, Kovar, Christie L., Dinh, Huyen H., Joshi, Vandita, Jing, Chyn, Lara, Fremiet, Thornton, Rebecca, Chen, Lei, Deng, Jixin, Liu, Yue, Shen, Joshua Y., Song, Xing-Zhi, Edson, Janette, Troon, Carmen, Thomas, Daniel, Stephens, Amber, Yapa, Lankesha, Levchenko, Tanya, Gibbs, Richard A., Cooper, Desmond W., Speed, Terence P., Fujiyama, Asao, Sugano, Sumio, Graves, Jennifer A.M., O'Neill, Rachel J., Pask, Andrew J., Forrest, Susan M., Toyoda, Atsushi, Sakaki, Yoshiyuki, and Worley, Kim C. (2011) Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biology, 12 (8). R81. pp. 1-25.

Robertson, Gordon, Schein, Jacqueline, Chiu, Readman, Corbett, Richard, Field, Matthew, Jackman, Shaun D., Mungall, Karen, Lee, Sam, Okada, Hisanaga Mark, Qian, Jenny Q., Griffith, Malachi, Raymond, Anthony, Thiessen, Nina, Cezard, Timothee, Butterfield, Yaron S., Newsome, Richard, Chan, Simon K., She, Rong, Varhol, Richard, Kamoh, Baljit, Prabhu, Anna-Liisa, Tam, Angela, Zhao, YongJun, Moore, Richard A., Hirst, Martin, Marra, Marco A,, Jones, Steven J.M., Hoodless, Pamela A., and Birol, Inanc (2010) De novo assembly and analysis of RNA-seq data. Nature Methods, 7 (11). pp. 909-912.

Raadsma, H.W., Zenger, K.R., Khatkar, M.S., Crump, R., Moser, G., Solkner, J., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Nicholas, F.W., and Tier, B. (2007) Genome wide selection in dairy cattle based on high-density genome-wide SNP analysis: from discovery to application. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 231-234. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Robinson, Andrew, Wu, Peter S.-C., Harrop, Stephen J. , Schaeffer, Patrick M. , Dosztanyi, Zsuzsanna, Gillings, Michael R., Holmes, Andrew J. , Nevalainen, K. M. Helena, Stokes, H. W., Otting, Gottfried, Dixon, Nicholas E., Curmi, Paul M. G., and Mabbutt, Bridget C. (2005) Integron-associated mobile gene cassettes code for folded proteins: the structure of Bal32a, a new member of the adaptable α+β barrel family. Journal of Molecular Biology, 346 (5). pp. 1229-1241.

S

Solano, Angela, Novelli, Giuseppe, Baghat, Shruti, Carnici, Piero, van Ommen, Gert-Jan, and Reichardt, Juergen K.V. (2019) Meeting report: the Human Genome Meeting (HGM) 2019 in Seoul, Korea. Human Genomics, 13. pp. 35-38.

Susilawati, Tri Nugraha (2016) Evaluation of next-generation sequencing technology in determining infectious causes of fever. PhD thesis, James Cook University.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A, and Strugnell, Jan M. (2015) De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family. Marine Biotechnology, 17. pp. 23-32.

Susilawati, Tri Nugraha, and McBride, William John Hannan (2014) Undiagnosed undifferentiated fever in Far North Queensland, Australia: a retrospective study. International Journal of Infectious Diseases, 27. pp. 59-64.

Swaegers, J., Mergeay, J., Maes, G.E., Van Houdt, J.K.J., Larmuseau, M.H.D., and Stoks, R. (2012) Microsatellite marker development and putative SNP detection for a northward expanding damselfly species using next generation sequencing. Conservation Genetics Resources, 4 (4). pp. 1079-1084.

Stow, Adam, Zenger, Kyall, Briscoe, David, Gillings, Michael, Peddemors, Victor, Otway, Nicholas, and Harcourt, Robert (2006) Isolation and genetic diversity of endangered grey nurse shark (Carcharias taurus) populations. Biology Letters, 2 (2). pp. 308-311.

T

Taupin, Douglas, Lam, Wesley, Rangiah, David, McCallum, Larissa, Whittle, Belinda, Zhang, Yafei, Andrews, Daniel, Field, Matthew, Goodnow, Christopher C., and Cook, Matthew C. (2015) A deleterious RNF43 germline mutation in a severely affected serrated polyposis kindred. Human Genome Variation, 2. 15013. pp. 1-3.

Tomljenovic, Lucija (2009) Characterisation of Acropora AmTPR1, Drosophila Dpit47 and mouse TTC4 – a tetratricopeptide (TPR) gene family involved in development and cell proliferation. PhD thesis, James Cook University.

Ten Lohuis, Michael R., and Miller, David (1998) Genetic transformation of dinoflagellates (Amphidinium and Symbiodinium): expression of GUS in microalgae using heterologous promoter constructs. The Plant Journal, 13 (3). pp. 427-435.

V

Vaz, B.S., Cerqueira, G.S., Silva, J.C., Manzke, V.H.B., Moreira, C.G.A., and Moreira, H.L.M. (2010) Sequence analysis of the growth hormone gene of the South American catfish Rhamdia quelen. Genetics and Molecular Research, 9 (4). pp. 2184-2190.

W

Wright, Helen Worsley (2018) Genomics in nursing practice in Australia: a critical realist case study. PhD thesis, James Cook University.

Wise, Ingrid, Akbarov, Artur, Prestes, Prescilla, Eales, James, Denniff, Matthew, Samani, Nilesh, Tomaszewski, Maciej, and Charchar, Fadi (2018) Kidney DNA methylation as a driver of genetic change in the kidney. In: [Presented at Hypertension 2018]. From: Hypertension, 20-23 September 2018, Beijing, China.

Wise, I.A., Prestes, P., Tomaszewski, M., and Charchar, F.J. (2017) Specificity of DNA methylation in the hypertensive kidney. In: Abstracts from the High Blood Pressure Research Council of Australia Annual Scientific Meeting. 49. From: 2017 HBPRCA Annual Scientific Meeting, 29 November - 1 December 2017, Melbourne, VIC, Australia.

Wise, Ingrid, Prestes, Prescilla, Tomaszewski, Maciej, and Charchar, Fadi (2017) The involvement of kidney DNA methylation in blood pressure regulation. In: [Presented at the 13th Asian Pacific Congress of Hypertension]. From: 13th Asian Pacific Congress of Hypertension, 6 October 2017, Singapore.

Wise, Ingrid (2017) The role of kidney DNA methylation in hypertensive gene expression. In: [Presented at the Annnual Research Conference of the Federation University Australia]. From: Federation University Australia's Annual Research Conference, 2017, Ballarat, VIC, Australia.

Wise, Ingrid, Tomaszewski, Maciej, and Charchar, Fadi (2016) Reduced DNA methylation the human kidney is associated with increased blood pressure. In: [Presented at the the 26th Scientific Meeting of the International Society of Hypertension]. From: 26th Scientific Meeting of the International Society of Hypertension, 24 - 29 September 2016, Seoul, Korea.

Wise, Ingrid (2016) Epigenetic modifications in essential hypertension. In: [Presented at the Annnual Research Conference of the Federation University Australia]. From: Federation University Australia's Annual Research Conference, 2016, Ballarat, VIC, Australia.

Wise, Ingrid A., Pretes, Precilla, Tomaszewski, Maciej D., and Charchar, Fadi J. (2016) The involvement of Kidney DNA methylation in blood pressure regulation. In: [Presented at the 16th Annual Conference of the Australasian Genomic Technologies Association and the 8th Annual NZ Next Generation Sequencing Conference]. From: AGTA/NZ NGS 2016: 16th Annual Conference of the Australasian Genomic Technologies Association and the 8th Annual NZ Next Generation Sequencing Conference, 9-12 October 2016, Auckland, New Zealand.

Wilmott, James S., Field, Matthew A., Johansson, Peter A., Kakavand, Hojabr, Shang, Ping, De Paoli-Iseppi, Ricardo, Vilain, Ricardo E., Pupo, Gulietta M., Tembe, Varsha, Jakrot, Valerie, Shang, Catherine A., Cebon, Jonathan, Shackleton, Mark, Fitzgerald, Anna, Thompson, John F., Hayward, Nichoas K., Mann, Graham J., and Scolyer, Richard A. (2015) Tumour procurement, DNA extraction, coverage analysis and optimisation of mutation-detection algorithms for human melanoma genomes. Pathology, 47 (7). pp. 683-693.

Walker, Peter J., Widen, Stephen G., Firth, Cadhla, Blasdell, Kim R., Wood, Thomas G., Travassos da Rosa, Amelia P.A., Guzman, Hilda, Tesh, Robert B., and Vasilakis, Nikos (2015) Genomic characterization of Yogue, Kasokero, Issyk-Kul, Keterah, Gossas, and Thiafora Viruses: Nairoviruses naturally infecting bats, shrews, and ticks. American Journal of Tropical Medicine and Hygiene, 93 (5). pp. 1041-1051.

Wang, Chenwei, Deakin, Janine E., Rens, Willem, Zenger, Kyall R., Belov, Katherine, Marshall Graves, Jennifer A., and Nicholas, Frank W. (2011) A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map. BMC Genomics, 12. 422. pp. 1-12.

Wang, Chenwei, Webley, Lee, Wei, Ke-jun, Wakefield, Matthew J., Patel, Hardip R., Deakin, Janine E., Alsop, Amber, Marshall Graves, Jennifer A., Cooper, Desmond W., Nicholas, Frank W., and Zenger, Kyall R. (2011) A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii). BMC Genetics, 12. 72. pp. 1-16.

Werren, John H., Richards, Stephen, Desjardins, Christopher A., Niehuis, Oliver, Gadau, Jurgen, Colbourne, John K., Beukeboom, Leo W., Desplan, Claude, Elsik, Christine G., Grimmelikhuijzen, Cornelis J.P., Kitts, Paul, Lynch, Jeremy A., Murphy, Terence, Oliveria, Deodoro C.S.G., Smith, Christopher D., van de Zande, Louis, Worley, Kim C., Zdobnov, Evgeny M., Aerts, Maarten, Albert, Stefan, Anaya, Victor H., Anzola, Juan M., Barchuk, Angel R., Behura, Susanta, Bera, Agata N., Berenbaum, May R., Bertossa, Rinaldo C., Bitonda, Marcia M.G., Bordenstein, Seth R., Bork, Peer, Bornberg-Bauer, Erich, Brunain, Marleen, Cazzamali, Giuseppe, Chaboub, Lesley, Chacko, Joseph, Chavez, Dean, Childers, Christopher P., Choi, Jeong-Hyeon, Clarke, Michael E., Claudianos, Charles, Clinton, Rochelle A., Cree, Andrew G., Cristino, Alexandre S., Dang, Phat M., Darby, Alistair C., de Graaf, Dirk C., Devreese, Bart, Dinh, Huyen H., Edwards, Rachel, Elango, Navin, Elhaik, Eran, Ermolaeva, Olga, Evans, Jay D., Foret, Sylvain, Fowler, Gerald R., Gerlach, Daniel, Gibson , Joshua D., Gilbert, Donald G., Graur, Dan, Grunder, Stefan, Hagen, Darren E., Han, Yi, Hauser, Frank, Hultmark, Da, Hunter IV, Henry C., Hurst, Gregory D.D., Jhangian, Shatini N., Jiang, Huaiyang, Johnson, Reed M., Jones, Andrew K., Junier, Thomas, Kadowaki, Tatsuhiko, Kamping, Albert, Kapustin, Yuri, Kechavarzi, Bobak, Kim, Jaebum, Kim, Jay, Kiryutin, Boris, Koevoets, Tosca, Kovar, Christie L., Kriventseva, Evgenia V., Kucharski, Robert, Lee, Heewook, Lee, Sandra L., Lees, Kristin, Lewis, Lora R., Loehlin, David W., Logsdon Jr, John M., Lopez, Jacqueline A., Lozado, Ryan J., Maglott, Donna, Maleszka, Ryszard, Mayampurath, Anoop, Mazur, Danielle J., McClure, Marcella A., Moore, Andrew D., Morgan, Margaret B., Muller, Jean, Munoz-Torres, Monica C., Muzny, Donna M., Nazareth, Lynne V., Neupert, Susanne, Nguyen, Ngoc B., Nunes, Francis M.F., Oakeshott, John G., Okwuonu, Geoffrey O., Pannebakker, Bart A., Pejavar, Vikas R., Peng, Zuogang, Pratt, Stephen C., Predel, Reinhard, Pu, Ling-Ling, Ranson, Hilary, Raychoudhury, Rhitoban, Rechteiner, Andreas, Reese, Justin T., Reid, Jeffrey G., Riddle, Megan, Robertson, Il Hugh M., Romero-Severson, Jeanne, Rosenberg, Miriam, Sackton, Timothy B., Sattele , David B., Schluns, Helge, Schmitt, Thomas, Schneider, Martina, Schuler, Andreas, Schurko, Andrew M., Shuker , David M., Simoes, Zila L.P., Sinha, Saurabh, Smith, Zachary, Solovyev, Victor, Souvorov, Alexandre, Springauf, Andreas, Stafflinger, Elisabeth, Stage, Deborah E., Stanke, Mario, Tanaka, Yoshiaki, Telschow, Arndt, Trent, Carol, Vattathil, Selina, Verhulst, Eveline C., Viljakainen, Lumi, Wanner, Kevin W., Waterhouse, Robert M., Whitfield, James B., Wilkes, Timothy E., Williamson, Michael, Willis, Judith H., Wolschin, Florian, Wyder, Stefan, Yamada, Takuji, Yi, Soojin V., Zecher, Courtney N., Zhange, Lan, and Gibbs, Richard A. (2010) Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species. Science, 327 (5963). pp. 343-348.

Y

Yang, Rongchang, Palermo, Cindy, Chen, Linda, Edwards, Amanda, Paparini, Andrea, Tong, Kaising, Gibson-Kueh, Susan, Lymbery, Alan, and Ryan, Una (2015) Genetic diversity of Cryptosporidium in fish at the 18S and actin loci and high levels of mixed infections. Veterinary Parasitology, 214 (3-4). pp. 255-263.

Young, Neil D., Jex, Aaron R., Lo, Bo, Liu, Shiping, Yang, Linfeng, Xiong, Zijun, Li, Yingrui, Cantacessi, Cinzia, Hall, Ross S., Xu, Xun, Chen, Fangyuan, Wu, Xuan, Zerlotini, Adhemar, Oliveira, Guilherme, Hofmann, Andreas, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Campbell, Bronwyn E., Loukas, Alex, Ranganathan, Shoba, Rollinson, David, Rinaldi, Gabriel, Brindley, Paul J., Yang, Huanming, Wang, Jun, Wang, Jian, and Gasser, Robin B. (2012) Whole-genome sequence of Schistosoma haematobium. Nature Genetics, 44 (2). pp. 221-225.

Young, Neil D., Jex, Aaron R., Cantacessi, Cinzia, Hall, Ross S., Campbell, Bronwyn E., Spithill, Terence W., Tangkawattana, Sirikachorn, Tangkawattana, Prasarn, Laha, Thewarach, and Gasser, Robin B. (2011) A portrait of the transcriptome of the neglected trematode, Fasciola gigantica: biological and biotechnological implications. PLoS Neglected Tropical Disease, 5 (2). e1004. pp. 1-12.

Young, Neil D., Hall, Ross S., Jex, Aaron R., Cantacessi, Cinzia, and Gasser, Robin B. (2010) Elucidating the transcriptome of Fasciola hepatica: a key to fundamental and biotechnological discoveries for a neglected parasite. Biotechnology Advances, 28 (2). pp. 222-231.

Z

Zhou, Yan, Zheng, Huajun, Chen, Yangyi, Zhang, Lei, Wang, Kai, Guo, Jing, Huang, Zhen, Guo, Jing, Huang, Zhen, Zhang, Bo, Huang, Wei, Jin, Ke, Dou, Tonghai, Hasegawa, Masami, Wang, Li, Zhang, Yuan, Zhou, Jie, Tao, Lin, Cao, Zhiwei, Li, Yixue, Vinar, Tomas, Brejova, Brona, Brown, Dan, Li, Ming, Miller, David, Blair, David, Zhong, Yang, Chen, Zhu, Liu, Feng, Hu, Wei, Wang, Zhi-Qin, Zhang, Qin-Hua, Song, Huai-Dong, Chen, Saijuan, Xu, Xuenian, Xu, Bin, Ju, Chuan, Huang, Yucheng, Brindley, Paul, McManus, Donald, Feng, Zheng, Han, Ze-Guang, Lu, Gang, Ren, Shuangxi, Wang, Yuezhu, Wenyi, Gu, Kang, Hui, Chen, Jie, Cheng, Xiaoyun, Chen, Shuting, Wang, Lijun, Yan, Jie, Wang, Biyun, Lv, Zinyan, Jin, Lei, Wang, Bofei, Pu, Shiyin, Zhang, Xianglin, Zhang, Wei, Hu, Qiuping, Zhu, Genfeng, Wang, Jun, Yu, Jun, Wang, Jian, Yang, Huamming, Ning, Zemin, Beriman, Matthew, Wei, Chia-Lin, Ruan, Yijuan, Zhao, Guoping, and Wang, Shengyue (2009) The Schistosoma japonicum genome reveals features of host–parasite interplay. Nature, 460. pp. 345-352.

Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., Hawken, R.J., and Raadsma, H.W. (2007) Genome-wide genetic diversity of Holstein Friesian cattle reveals new insights into Australian and global population variability, including impact of selection. Animal Genetics, 38 (1). pp. 7-14.

Zenger, K.R., Khatkar, M.S., Tier, B., Hobbs, M., Cavanagh, J.A.L., Solkner, J., Hawken, R.J., Barris, W., and Raadsma, H.W. (2007) QC analyses of SNP array data: experience from a large population of dairy sires with 23.8 million data points. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 123-126. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Zenger, Kyall R., Stow, Adam J., Peddemors, Victor, Briscoe, David A., and Harcourt, Robert G. (2006) Widespread utility of highly informative AFLP molecular markers across divergent shark species. Journal of Heredity, 97 (6). pp. 607-611.

Zenger, Kyall R., Eldridge, Mark D.B., and Johnston, Peter G. (2003) A rapid PCR-RFLP diagnostic test for distinguishing sympatric bandicoot species (Marsupialia: Peramelidae) in southeastern Australia. Conservation Genetics, 4 (5). pp. 655-657.

Zenger, K.R., Richardson, B.J., and Vachot-Griffin, A-M. (2003) A rapid population expansion retains genetic diversity within European rabbits in Australia. Molecular Ecology, 12 (3). pp. 789-794.