Article

Edmunds, Richard C., Su, Baofeng, Balhoff, James P., Eames, B. Frank, Dahdul, Wasila M., Lapp, Hilmar, Lundberg, John G., Vision, Todd J., Dunham, Rex A., Mabee, Paula M., and Westerfield, Monte (2015) Phenoscape: identifying candidate genes for evolutionary phenotypes. Molecular Biology and Evolution, 33 (1). pp. 13-24.

Akawi, Nadia, McRae, Jeremy, Ansari, Morad, Balasubramanian, Meena, Blyth, Moira, Brady, Angela F., Clayton, Stephen, Cole, Trevor, Deshpande, Charu, Fitzgerald, Tomas W., Foulds, Nicola, Francis, Richard, Gabriel, George, Gerety, Sebastian S., Goodship, Judith, Hobson, Emma, Jones, Wendy D., Joss, Shelagh, King, Daniel, Klena, Nikolai, Kumar, Ajith, Lees, Melissa, Lelliott, Chris, Lord, Jenny, McMullan, Dominic, O'Regan, Mary, Osio, Deborah, Piombo, Virginia, Prigmore, Elena, Rajan, Diana, Rosser, Elisabeth, Sifrim, Alejandro, Smith, Audrey, Swaminathan, Ganesh J., Turnpenny, Peter, Whitworth, James, Wright, Caroline F., Firth, Helen V., Barrett, Jeffrey C., Lo, Cecilia W., FitzPatrick, David R., Hurles, Matthew E., and for the DDD Study (2015) Discovery of four recessive developmental disorders using probabilistic genotype and phenotype matching among 4,125 families. Nature Genetics, 47 (11). pp. 1363-1369.

Dufresnes, Christophe, Borzée, Amaël, Horn, Agnes, Stöck, Matthias, Ostini, Massimo, Sermier, Roberto, Wassef, Josef, Litvinchuck, Spartak N., Kosch, Tiffany A., Waldman, Bruce, Jang, Yikweon, Brelsford, Alan, and Perrin, Nicholas (2015) Sex-chromosome homomorphy in Palearctic tree frogs results from both turnovers and XY recombination. Molecular Biology and Evolution, 32 (9). pp. 2328-2337.

Bosch, Thomas C.G., Adamska, Maja, Augustin, René, Domazet-Loso, Tomislav, Foret, Sylvain, Fraune, Sebastian, Funayama, Noriko, Grasis, Juris, Hamada, Mayuko, Hatta, Masayuki, Hobmayer, Bert, Kawai, Kotoe, Klimovich, Alexander, Manuel, Michael, Shinzato, Chuya, Technau, Uli, Yum, Seungshic, and Miller, David J. (2014) How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans. BioEssays, 36 (12). pp. 1185-1194.

Kiso, Honoka, Takahashi, Katsu, Saito, Kazuyuki, Togo, Yumiko, Tsukamoto, Hiroko, Huang, Boyen, Sugai, Manabu, Shimizu, Akira, Tabata, Yasuhiko, Economides, Aris N., Slavkin, Harold C., and Bessho, Kazuhisa (2014) Interactions between BMP-7 and USAG-1 (Uterine Sensitization-Associated Gene-1) regulate supernumerary organ formations. PLoS ONE, 9 (5). e96938. pp. 1-10.

Fortunato, Sofia A.V., Adamski, Marcin, Mendivil-Ramos, Olivia, Leininger, Sven, Jing, Liu, Ferrier, David E.K, and Adamska, Maja (2014) Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature, 514 (7524). pp. 620-623.

Fortunato, Sofia AV, Leininger, Sven, and Adamska, Maja (2014) Evolution of the Pax-Six-Eya-Dach network: the calcisponge case study. EvoDevo, 5. 23.

Huang, B., Takahashi, K., Sakata-Goto, T., Kiso, H., Togo, Y., Saito, K., Tsukamoto, H., Sugai, M., Akira, S., Shimizu, A., and Bessho, K. (2013) Phenotypes of CCAAT/enhancer-binding protein beta deficiency: hyperdontia and elongated coronoid process. Oral Diseases, 19 (2). pp. 144-150.

Sakata-Goto, Tomoko, Takahashi, Katsu, Kiso, Honoka, Huang, Boyen, Tsukamoto, Hiroko, Takemoto, Mitsuru, Hayashi, Tatsunari, Sugai, Manabu, Nakamura, Takashi, Yokota, Yoshifumi, Shimizu, Akira, Slavkin, Harold, and Bessho, Kazuhisa (2012) Id2 controls chondrogenesis acting downstream of BMP signaling during maxillary morphogenesis. Bone, 50 (1). pp. 69-78.

Foote, Andrew, Sellars, Melony, Coman, Greg, and Merritt, David (2010) Cytological defects during embryogenesis in heat-induced tetraploid Kuruma shrimp Penaeus japonicus. Arthropod Structure & Development, 39 (4). pp. 268-275.

Hartmann, Beata, Müller, Michael, Hislop, Nikki R., Roth , Bettina, Tomljenovic, Lucija, Miller, David J., and Reichert, Heinrich (2010) Coral emx-Am can substitute for Drosophila empty spiracles function in head, but not brain development. Developmental Biology, 340 (1). pp. 125-133.

Miller, David J., and Technau, Ulrich (2010) Understanding the evolution of multicellularity; insights from basal metazoans. BioEssays, 32 (2). pp. 175-178.

Rutkowski, Rachael J., and Warren, William D. (2009) Phenotypic analysis of deflated/Ints7 function in Drosophila development. Developmental Dynamics, 238 (5). pp. 1131-1139.

Bennett, Craig L., Chen, Yingzhang, Hahn, Sihoun, Glass, Ian A., and Gospe Jr, Sidney M. (2009) Prevalence of ALDH7A1 mutations in 18 North American pyridoxine-dependent seizure (PDS) patients. Epilepsia, 50 (5). pp. 1167-1175.

Page, Scott L., Khetani, Radhika S., Lake, Cathleen M., Nielsen, Rachel J., Jeffress, Jennifer K., Warren, William D., Bickel, Sharon E., and Hawley, R. Scott (2008) Corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila Oocytes. PLoS Genetics, 4 (9). e1000194. pp. 1-12.

Hallison, Graham, Syrzycka, Monika, Beck, Samantha A., Kennison, James A., Dorsett, Dale, Page, Scott L., Hunter, Sally M., Keall, Rebecca M., Warren, William D., Brock, Hugh W., Sinclair, Donald A. R., and Honda, Barry M. (2008) The Drosophila cohesin subunit Rad21 is a trithorax group (trxG) protein. Proceedings of the National Academy of Sciences of the United States of America, 105 (34). pp. 12405-12410.

Crozier, Ross H., and Schluns, Helge (2008) Genetic caste determination in termites: out of the shade but not from Mars. BioEssays, 30 (4). pp. 299-302.

Tagariello, A, Schlaubitz, S, Hankeln, T, Mohrmann, G, Stelzer, C, Schweizer, A, Hermanns, P, Lee, B, Schmidt, ER, Winterpacht, A, and Zabel, B (2005) Expression profiling of human fetal growth plate cartilage by EST sequencing. Matrix biology, 24 (8). pp. 530-538.

Xu, Huiling, Beasley, Matthew D., Warren, William D., van der Horst, Gijsbertus T., and McKay, Michael J. (2005) Absence of mouse Rec8 cohesin promotes synapsis of sister chromatids in meiosis. Developmental Cell, 8 (6). pp. 949-961.

Belli, Sabina I., Walker, Robert A., and Flowers, Sarah A. (2005) Global protein expression analysis in apicomplexan parasites: current status. Proteomics, 5 (4). pp. 918-924.

Ball, Eldon E., Hayward, David C., Saint, Robert, and Miller, David J. (2004) A simple plan: cnidarians and the origins of developmental mechanisms. Nature Reviews: Genetics, 5 (8). pp. 567-577.

Miller, Steven W., Hayward, David C., Bunch, Thomas A., Miller, David J., Ball, Eldon E., Bardwell, Vivian J., Zarkower, David, and Brower, Danny L. (2003) A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination. Evolution & Development, 5 (3). pp. 251-258.

Vass, Sharron, Cotterill, Sue, Valdeolmillos, Ana M., Barbero, Jose L., Lin, Enmoore, Warren, William D., and Heck, Margarete M.S. (2003) Depletion of Drad21/Scc1 in Drosophila cells leads to instability of the cohesin complex and disruption of mitotic progression. Current Biology, 13 (3). pp. 208-218.

Beasley, M, Xu, H, Warren, WD, and McKay, MJ (2002) Conserved disruptions in the predicted coiled-coil domains of eukaryotic SMC complexes: Implications for structure and function. Genome research, 12 (8). pp. 1201-1209.

Munday, P.L., and Molony, B.W. (2002) The energetic cost of protogynous versus protandrous sex change in the bi-directional sex-changing fish Gobiodon histrio. Marine Biology, 141 (6). pp. 1011-1017.

Dong, Liang, Chang, Jenny R., Chin, Alvin J., Smith, Alastair, Kelly, Christina, Weinberg, Eric S., and Ge, Ruowen (2001) The role of Vascular Endothelial Growth Factor (VEGF) in Vasculogenesis, Angiogenesis, and Hematopoiesis in Zebrafish development. Mechanisms of Development, 108 (1-2). pp. 29-43.

Warren, W.D., Steffensen, S., Lin, E., Coelho, P., Loupart, M-L., Cobbe, N., Lee, J.Y., McKay, M.J., Orr-Weaver, T, Heck, M.M.S., and Sunkel, C.E. (2000) The Drosophila RAD21 cohesin persists at the centromere region in mitosis. Current Biology, 10 (22). pp. 1463-1466.

Book Chapter

Takahashi, Katsu, Kiso, Honoka, Saito, Kazuyuki, Togo, Yumiko, Tsukamoto, Hiroko, Huang, Boyen, and Besho, Kazuhisa (2013) Feasibility of gene therapy for tooth regeneration by stimulation of a third dentition. In: Martin, Francisco, (ed.) Gene therapy: tools and potential applications. InTech, Rijeka, Croatia, pp. 727-744.

Conference Item

Peña, Santiago, Gummow, Bruce, Parker, Anthony J., and Paris, Damien B.B.P. (2015) Baked boars to blame? Re-evaluating summer infertility in the pig. In: Presentations from the North Queensland Festival of Life Sciences 2015. p. 22. From: North Queensland Festival of Life Sciences 2015, 5 November 2015, Townsville, QLD, Australia.

Pena, Santiago, and Paris, Damien (2015) Baked boars to blame? Re-evaluating summer infertility in the pig. In: Presentations from the Townsville Health Symposium 2015. p. 8. From: Townsville Health Symposium 2015: Spotlight on Local Researchers, 7-9 October 2015, Townsville, QLD, Australia.

Huang, Boyen, Takahashi, Katsu, Sakata-Goto, Tomoko, Kiso, Honoka, Tsukamoto, Hiroko, and Bessho, Kazuhisa (2011) Id2 acts downstream of BMP signaling in chondrogenesis. In: Abstracts from the 18th Annual Meeting of Bone Morphogenetic Protein for Medical Staffs. From: 18th Annual Meeting of Bone Morphogenetic Protein for Medical Staffs, 31 July 2011, Osaka, Japan.

Sakata, T., Takahashi, K., Kiso, H., Huang, B., Tsukamoto, H., and Bessho, K. (2011) Morphological analysis of maxillary deformity in Id2 KO mice. In: Abstracts from the 89th General Session and Exhibition of the International Association for Dental Research. 974. From: IADR 2011: 89th General Session and Exhibition of the International Association for Dental Research, 16-19 March 2011, San Diego, CA, USA.

Thesis

Banh, Thi Quyen Quyen (2019) Sex differentiation of barramundi lates calcarifer – understanding male sexual development and its manipulation through exogenous steroids and non-steroidal aromatase inhibitor. PhD thesis, James Cook University.

Peña Jr., Santiago T. (2018) Revisiting summer infertility in the boar: impact of heat stress on the quality and DNA integrity of spermatozoa, and its mitigation by antioxidant therapy. PhD thesis, James Cook University.

Wessels, Wiebke (2016) Molecular bases of soft coral reproduction. PhD thesis, James Cook University.

Gusmão, Luiz Felipe Mendes (2010) Controls on development and nucleic acid indices in tropical planktonic copepods. PhD thesis, James Cook University.

Hunter, Sally M. (2009) Identification of novel modifiers of chromosome inheritance: using a genetically sensitised drosophila model. PhD thesis, James Cook University.

Go, Hiroki (2005) Characterization of doublesex and nanos genes in Acropora millepora. PhD thesis, James Cook University.

Hislop, Nikki Rochelle (2003) Characterisation of anterior patterning genes in the staghorn coral, Acropora millepora(Cnidaria; Anthozoa; Scleractinia). PhD thesis, James Cook University.