B

Boukouvala, Evridiki, Cariani, Alessia, Maes, Gregory E., Sevilla, Rafael G., Verrez-Bagnis, Veronique, Jerome, Marc, Guarniero, Ilaria, Monios, Georgios, Tinti, Fausto, Volckaert, Filip A.M., Bautista, Jose M., and Krey, Grigorios (2012) Restriction fragment length analysis of the cytochrome b gene and muscle fatty acid composition differentiate the cryptic flatfish species Solea solea and Solea aegyptiaca. Journal of Agricultural and Food Chemistry, 60 (32). pp. 7941-7948.

Beck, Jennifer L., Urathamakul, Thitima, Watt, Stephen J., Sheil, Margaret M., Schaeffer, Patrick M., and Dixon, Nicholas E. (2006) Proteomic dissection of DNA polymerization. Expert Review of Proteomics, 3 (2). pp. 197-211.

C

Cortés, Alba, Sotillo, Javier, Muñoz-Antoli, Carla, Fried, Bernard, Esteban, J. Guillermo, and Toledo, Rafael (2015) Altered protein expression in the ileum of mice associated with the development of chronic infections with Echinostoma caproni (Trematoda). PLoS Neglected Tropical Disease, 9 (9). e0004082. pp. 1-25.

Chaiyadet, Sujittra, Sotillo, Javier, Smout, Michael, Cantacessi, Cinzia, Jones, Malcolm K., Johnson, Michael S., Turnbull, Lynne, Whitchurch, Cynthia B., Potriquet, Jeremy, Laohaviroj, Marut, Mulvenna, Jason, Brindley, Paul J., Bethony, Jeffrey M., Laha, Thewarach, Sripa, Banchob, and Loukas, Alex (2015) Carcinogenic liver fluke secretes extracellular vesicles that promote cholangiocytes to adopt a tumorigenic phenotype. Journal of Infectious Diseases, 212 (10). pp. 1636-1645.

Chi, Bui Khanh, Roberts, Alexandra A., Huyen, Tran Thi Thanh, Bäsell, Katrin, Becher, Dorte, Albrecht, Dirk, Hamilton, Chris J., and Antelmann, Haike (2013) S-bacillithiolation protects conserved and essential proteins against hypochlorite stress in Firmicutes bacteria. Antioxidants & Redox Signaling, 18 (11). pp. 1273-1295.

Chen, Jiandong, Waltenspiel, Bernhard, Warren, William D., and Wagner, Eric. J. (2013) Functional analysis of the integrator subunit 12 identifies a microdomain that mediates activation of the Drosophila integrator complex. Journal of Biological Chemistry, 288 (7). pp. 4867-4877.

G

Gaballa, Ahmed, Chi, Bui Khanh, Roberts, Alexandra A., Becher, Dörte, Hamilton, Chris J., Antelmann, Haike, and Helmann, John D. (2014) Redox regulation in Bacillus subtilis: the bacilliredoxins BrxA(YphP) and BrxB(YqiW) function in de-bacillithiolation of S-bacillithiolated OhrR and MetE. Antioxidants & Redox Signaling, 21 (3). pp. 357-367.

Graham, Stephen C., Lilley, Penelope E., Lee, Mihwa, Schaeffer, Patrick M., Kralicek, Andrew V., Dixon, Nicholas E., and Guss, J. Mitchell (2006) Kinetic and crystallographic analysis of mutant Escherichia coli aminopeptidase P: insights into substrate recognition and the mechanism of catalysis. Biochemistry, 45 (3). pp. 964-975.

H

Hussey, Nigel E., Olin, Jill A., Kinney, Michael J., McMeans, Bailey C., and Fisk, Aaron T. (2012) Lipid extraction effects on stable isotope values (δ13C and δ15N) of elasmobranch muscle tissue. Journal of Experimental Marine Biology and Ecology, 434-435. pp. 7-15.

Hashempour, Hossein, Ghassempour, Alireza, Daly, Norelle, Spengler, Bernhard, and Römpp, Andreas (2011) Analysis of cyclotides in Viola ignobilis by Nano liquid chromatography fourier transform mass spectrometry. Protein and Peptide Letters, 18 (7). pp. 747-752.

K

Kozlov, Sergei V., Waardenberg, Ashley J., Engholm-Keller, Kasper, Arthur, Jonathan W., Graham, Mark E., and Lavin, Martin (2015) Reactive oxygen species (ROS)-activated ATM-dependent phosphorylation of cytoplasmic substrates identified by large-scale phosphoproteomics screen. Molecular and Cellular Proteomics, 15 (3). pp. 1032-1047.

L

Lokireddy, Sudarsanareddy, Wijesoma, Isuru Wijerupage, Sze, Siu Kwan, McFarlane, Craig, Kambadur, Ravi, and Sharma, Mridula (2012) Identification of atrogin-1-targeted proteins during the myostatin-induced skeletal muscle wasting. American Journal of Physiology: cell physiology, 303 (5). C512-C529.

Lacourse, E. James, Perally, Samirah, Morphew, Russell M., Moxon, Joseph V., Prescott, Mark, Dowling, David J., O'Neill, Sandra M., Kipar, Anja, Hetzel, Udo, Hoey, Elizabeth, Zafra, Rafael, Buffoni, Leandro, Arévalo, José Pérez, and Brophy, Peter M. (2012) The sigma class glutathione transferase from the liver fluke Fasciola hepatica. PLoS Neglected Tropical Disease, 6 (5). e1666. pp. 1-14.

M

Moxon, Joseph V., Liu, Dawei, Moran, Corey S., Crossman, David J., Krishna, Smriti M., Yonglitthipagon, Ponlapat, Emeto, Theophilus I., Morris, Dylan R., Padula, Matthew P., Mulvenna, Jason P., Rush, Catherine M., and Golledge, Jonathan (2014) Proteomic and genomic analyses suggest the association of Apolipoprotein C1 with abdominal aortic aneurysm. Proteomics Clinical Applications, 8 (10). pp. 762-772.

Muñoz-Antoli, Carla, Cortés, Alba, Sotillo, Javier, Fried, Bernard, Esteban, J. Guillermo, and Toledo, Rafael (2014) Differential expression and glycosylation of proteins in the rat ileal epithelium in response to Echinostoma caproni infection. Journal of Proteomics, 101. pp. 169-178.

Moreau, Morgane Julie Jackie (2013) DNA replication in Escherichia coli: a comprehensive study of the Tus-Ter complex. PhD thesis, James Cook University.

Moreau, Morgane J.J., and Schaeffer, Patrick M. (2012) Differential Tus–Ter binding and lock formation: implications for DNA replication termination in Escherichia coli. Molecular BioSystems, 8 (10). pp. 2783-2791.

Moreau, Morgane J.J., Morin, Isabelle, Askin, Samuel P., Cooper, Alanna, Moreland, Nicole J., Vasudevan, Subhash G., and Schaeffer, Patrick M. (2012) Rapid determination of protein stability and ligand binding by differential scanning fluorimetry of GFP-tagged proteins. RSC Advances, 2 (31). pp. 11892-11900.

Mylne, Joshua S., Colgrave, Michelle L., Daly, Norelle, Chanson, Aurelie H., Elliott, Alysha G., McCallum, Emily J., Jones, Alun, and Craik, David J. (2011) Albumins and their processing machinery are hijacked for cyclic peptides in sunflower. Nature Chemical Biology, 7 (5). pp. 257-259.

Morin, Isabelle, Askin, Samuel P., and Schaeffer, Patrick M. (2011) IgG-detection devices for the Tus-Ter-lock immuno-PCR diagnostic platform. Analyst, 136 (22). pp. 4815-4821.

P

Prasopdee, Sattrachai, Tesana, Smarn, Cantacessi, Cinzia, Laha, Thewarach, Mulvenna, Jason, Grams, Rudi, Loukas, Alex, and Sotillo, Javier (2015) Data set from the proteomic analysis of Bithynia siamensis goniomphalos snails upon infection with the carcinogenic liver fluke Opisthorchis viverrini. Data in Brief, 2. pp. 16-20.

Poth, Aaron G., Colgrave, Michelle L., Philip, Reynold, Kerenga, Bomai, Daly, Norelle L., Anderson, Marilyn A., and Craik, David J. (2011) Discovery of cyclotides in the fabaceae plant family provides new insights into the cyclization, evolution, and distribution of circular proteins. ACS Chemical Biology, 6 (4). pp. 345-355.

R

Roberts, Alexandra A., Sharma, Sunil V., Strankman, Andrew W., Duran, Shayla R., Rawat, Mamta, and Hamilton, Chris J. (2013) Mechanistic studies of FosB: a divalent-metal-dependent bacillithiol-S-transferase that mediates fosfomycin resistance in Staphylococcus aureus. Biochemical Journal, 451 (1). pp. 69-79.

Ramos-Silva, Paula, Kaandorp, Jaap, Huisman, Lotte, Marie, Benjamin, Zanella-Cléon, Isabelle, Guichard, Nathalie, Miller, David J., and Marin, Frédéric (2013) The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Molecular Biology and Evolution, 30 (9). pp. 2099-2112.

Robinson, Andrew, Wu, Peter S.-C., Harrop, Stephen J. , Schaeffer, Patrick M. , Dosztanyi, Zsuzsanna, Gillings, Michael R., Holmes, Andrew J. , Nevalainen, K. M. Helena, Stokes, H. W., Otting, Gottfried, Dixon, Nicholas E., Curmi, Paul M. G., and Mabbutt, Bridget C. (2005) Integron-associated mobile gene cassettes code for folded proteins: the structure of Bal32a, a new member of the adaptable α+β barrel family. Journal of Molecular Biology, 346 (5). pp. 1229-1241.

S

Sotillo, Javier, Pearson, Mark, Becker, Luke, Mulvenna, Jason, and Loukas, Alex (2015) A quantitative proteomic analysis of the tegumental proteins from Schistosoma mansoni schistosomula reveals novel potential therapeutic targets. International Journal for Parasitology, 45 (8). pp. 505-516.

Sotillo, Javier, Sanchez-Flores, Alejandro, Cantacessi, Cinzia, Harcus, Yvonne, Pickering, Darren, Bouchery, Tiffany, Camberis, Mali, Tang, Shiau-Choot, Giacomin, Paul, Mulvenna, Jason, Mitreva, Makedonka, Berriman, Matthew, LeGros, Graham, Maizels, Rick M., and Loukas, Alex (2014) Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis. Molecular and Cellular Proteomics, 13 (10). pp. 2736-2751.

Schaeffer, Patrick, and Dixon, Nicholas (2009) Synthesis and applications of covalent protein-DNA conjugates. Australian Journal of Chemistry, 62 (10). pp. 1328-1332.

Schaeffer, Patrick, and Dixon, N.E. University of Wollongong and James Cook University (2008) Diagnostics in monoplex/multiplex. WO 2008 148143 A1 .

Schaeffer, Patrick M., Headlam, Madeleine J., and Dixon, Nicholas E. (2005) Protein - protein interactions in the eubacterial replisome. IUBMB Life, 57 (1). pp. 5-12.

T

Tong, W.Y., Liang, Y.M., Tam, V., Yip, H.K., Kao, Y.T., Cheung, K.M.C., Yeung, K.W.K., and Lam, Y.W. (2010) Biochemical characterization of the cell-biomaterial interface by quantitative proteomics. Molecular and Cellular Proteomics, 9 (10). pp. 2089-2098.

V

Van Waardenberg, Ashley J. (2017) Statistical Analysis of ATM-Dependent Signaling in Quantitative Mass Spectrometry Phosphoproteomics. In: Kozlov, Sergei V., (ed.) ATM Kinase. Methods in Molecular Biology, 1599 . Springer, New York, NY, USA, pp. 229-244.

W

Watson, Gregory S., Schwarzkopf, Lin, Cribb, Bronwen W., Myhra, Sverre, Gellender, Marty, and Watson, Jolanta A. (2015) Removal mechanisms of dew via self-propulsion off the gecko skin. Journal of the Royal Society Interface, 12 (105). 20141396. pp. 1-11.

Y

You, Hong, McManus, Donald P., Hu, Wei, Smout, Michael J., Brindley, Paul J., and Gobert, Geoffrey N. (2013) Transcriptional responses of in vivo praziquantel exposure in schistosomes identifies a functional role for calcium signalling pathway member CamKII. PLoS Pathogens, 9 (3). e1003254.