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Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: November 2015 - February 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, Davies, Jaclyn, Sankey, Tonia, and Rasheed, Michael (2016) Long-Term Seagrass Monitoring in Port Curtis: quarterly permanent transect monitoring progress report 2009 to 2015. Report. James Cook University, Cairns, QLD, Australia.

Bryant, C.V., Carter, A.B., Jarvis, J.C., and Rasheed, M.A. (2016) Port Curtis seagrass seed bank density and viability studies: year 2 report. Report. James Cook University, Cairns, QLD, Australia.

Bainbridge, Zoe T. (2015) Tracing the sources, transport and dispersal of suspended sediment from the Burdekin River catchment into the Great Barrier Reef lagoon. PhD thesis, James Cook University.

Bainbridge, Zöe T., Lewis, Stephen E., Smithers, Scott G., Kuhnert, Petra M., Henderson, Brent L., and Brodie, Jon E. (2014) Fine-suspended sediment and water budgets for a large, seasonally dry tropical catchment: Burdekin River catchment, Queensland, Australia. Water Resources Research, 50 (11). pp. 9067-9087.

Bryant, Catherine, and Reason, Carissa (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring May - July 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, and Tasker, Zoe (2014) Gladstone Western Basin Post Dredge BPAR Monitoring March - May 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, C., Davies, J.D., Jarvis, J.C., Tol, S., and Rasheed, M. (2014) Seagrasses in Port Curtis & Rodds Bay 2013: annual long term monitoring, biannual western basin surveys & updated baseline survey. Report. TropWATER, James Cook University, Cairns.

Bryant, C.V., and Tasker, Z. (2014) Gladstone Western Basin Post Dredge BPAR Monitoring December 2013 - February 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2014) Gladstone Healthy Harbour Partnership Pilot Report Card. ISP011: seagrass final report. Report. TropWATER, Cairns, QLD, Australia.

Bryant, C., Davies, J., Sankey, T., Jarvis, J., and Rasheed, M. (2014) Long Term Seagrass Monitoring in Port Curtis: quarterly seagrass assessments & permanent transect monitoring progress report 2009 to 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Beeden, Roger John (2014) A dynamic understanding of coral reef health informs resilience-based management of the Great Barrier Reef. PhD thesis, James Cook University.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report December 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report November 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, Amies, Rachel, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: September 2013 update report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Brodie, Jon, Waterhouse, Jane, Maynard, Jeffrey, Bennett, John, Furnas, Miles, Devlin, Michelle, Lewis, Stephen, Collier, Catherine, Schaffelke, Britta, Fabricius, Katharina, Petus, Caroline, da Silva, Eduardo, Zeh, Daniel, Randall, Lucy, Brando, Vittorio, McKenzie, Len, O'Brien, Dominique, Smith, Rachael, Warne, Michael, Brinkman, Richard, Tonin, Hemerson, Bainbridge, Zoe, Bartley, Rebecca, Negri, Andrew, Turner, Ryan, Davis, Aaron, Bentley, Christie, Mueller, Jochen, Alvarez-Romero, Jorge, Henry, Nyssa, Waters, David, Yorkston, Hugh, and Tracey, Dieter (2013) Assessment of the relative risk of water quality to ecosystems of the Great Barrier Reef. A report to the Department of the Environment and Heritage Protection, Queensland Government, Brisbane - Report 13/28. Report. James Cook University, Townsville, QLD, Australia.

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Brodie, Jon, Lewis, Stephen, Bainbridge, Zoe, Mitchell, Alan, Waterhouse, Jane, and Kroon, Frederieke (2009) Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60 (11). pp. 1141-1149.

Berger, Uta, Rivera-Monroy, Victor H., Doyle, Thomas W., Dahdouh-Guebas, Farid, Duke, Norman C., Fontalvo-Herazo, Martha L., Hildenbrandt, Hanno, Koedam, Nico, Mehlig, Ulf, Piou, Cyril, and Twilley, Robert R. (2008) Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: a review. Aquatic Botany, 89 (2). pp. 260-274.

Blanchette, Melanie Lise (2006) The use of esterase activity as a measure of copper toxicity in marine microalgae. Masters (Research) thesis, James Cook University.

Bell, Alicia M., and Duke, Norman C. (2005) Effects of Photosystem II-inhibiting herbicides on mangroves: preliminary toxicology trials. Marine Pollution Bulletin, 51 (1-4). pp. 297-307.

Berkelmans, Ray (2001) Bleaching, upper thermal limits and temperature adaptation in reef corals. PhD thesis, James Cook University.

Burns, K.A., Codi, S., and Duke, N.C. (2000) Gladstone, Australia field studies: weathering and degradation of hydrocarbons in oiled mangrove and salt marsh sediments with and without the application of an experimental bioremediation protocol. Marine Pollution Bulletin, 41 (7-12). pp. 392-402.

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Carter, Alex, Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Healthy Harbour Partnership 2016 Report Card: ISP011: seagrass. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.

Connolly, N.M., Pearson, R.G., Loong, D., Maughan, M., and Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment, 213. pp. 11-20.

Caronni, Sarah, Bresciani, Alessia, Delaria, Maria Anna, Meloni, Federico, Navone, Augusto, Panzalis, Pieraugusto, Heimann, Kirsten, and Ceccherelli, Giulia (2015) Ecology of the benthic mucilage-forming microalga Chrysophaeum taylorii in the W Mediterranean Sea: substratum and depth preferences. Estuarine, Coastal and Shelf Science , 161. pp. 38-45.

Carter, A.B., Davies, J.D., Bryant, C.V., Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2015) Seagrasses in Port Curtis and Rodds Bay 2014: annual long-term monitoring, biannual western basin, and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.

Carter, Alex, Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2015) Developing thresholds and indicators of seagrass meadow condition using long-term monitoring data. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 90. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Carter, Alex, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Development of seagrass indicators for the Gladstone Healthy Harbour Partnership report card. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait mapping: seagrass consolidation: 2002-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Taylor, H.A., McKenna, S.A., York, P.Y., and Rasheed, M.A. (2014) The effects of climate on seagrasses in the Torres Strait: 2011-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait dugong sanctuary: deepwater seagrass monitoring 2010-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Taylor, H.A., McKenna, S.A., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Thursday Island: March 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, and Rasheed, Michael (2014) Critical marine habitats in high risk areas, South Warden Reef to Howick Group region: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

Cowley, Robyn A., Hearnden, Mark N., Joyce, Karen E., Tovar-Valencia, Miguel, Cowley, Trisha M., Pettit, Caroline L., and Dyer, Rodd M. (2014) How hot? How often? Getting the fire frequency and timing right for optimal management of woody cover and pasture composition in northern Australian grazed tropical savannas. Kidman Springs Fire Experiment 1993-2013. Rangeland Journal, 36 (4). pp. 323-345.

Carter, A.B., McKenna, S.A., and Rasheed, M.A. (2013) Port of Weipa long‐term seagrass monitoring: August 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Taylor, Helen, McKenna, Skye, and Rasheed, Michael (2013) Critical marine habitats in high risk areas, Torres Strait: Seo Reef to Kai-Wareg Reef: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, and Rasheed, Michael (2013) Critical marine habitats in high risk areas: Bathurst Bay region: 2012 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Chartrand, Katie, and Rasheed, Michael (2012) Critical marine habitats in high risk areas: Princess Charlotte Bay region: 2011 atlas. Report. Department of Agriculture, Fisheries and Forestry (DAFF), Cairns, QLD, Australia.

Carranza, Alvar, Munoz Recio, Araceli, Kitahara, Marcelo, Scarabino, Fabrizio, Ortega, Leonardo, Lopez, Guzman, Franco-Fraguas, Paula, De Mello, Camila, Acosta, Juan, and Fontan, Antia (2012) Deep-water coral reefs from the Uruguayan outer shelf and slope. Marine Biodiversity, 42 (3). pp. 411-414.

Collier, C.J., Waycott, M., and McKenzie, L.J. (2012) Light thresholds derived from seagrass loss in the coastal zone of the northern Great Barrier Reef, Australia. Ecological Indicators, 23. pp. 211-219.

Carter, A.B., McKenna, S.A., and Rasheed, M.A. (2012) Port of Weipa long-term seagrass monitoring: 2000-2011. Report. Department of Employment, Economic Development and Innovation (DEEDI), Cairns, QLD, Australia.

Carter, Alex, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2012) Reproductive benefits of no-take reserves vary atitudinally for Plectropomus leopardus. In: Abstracts from the 12th International Coral Reef Symposium. pp. 259-260. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Collier, Catherine J., Waycott, Michelle, and Ospina, Ana Giraldo (2012) Responses of four Indo-West Pacific seagrass species to shading. Marine Pollution Bulletin, 65 (4-9). pp. 342-354.

Chin, Andrew, Lison de Loma, Thierry, Reytar, Katie, Planes, Serge, Gerhardt, Karin, Clua, Eric, Burke, Lauretta, and Wilkinson, Clive (2011) Status of Coral Reefs of the Pacific and Outlook: 2011. Global Coral Reef Monitoring Network.

Collier, Neil, Campbell, Bruce M., Sandker, Marieke, Garnett, Stephen T., Sayer, Jeffrey, and Boedhihartono, Agni Klintuni (2011) Science for action: the use of scoping models in conservation and development. Environmental Science & Policy, 14 (6). pp. 628-638.

Ceccarelli, Daniela, Beger, Maria, Kospartov, Marie, Richards, Zoe, and Birrell, Chico (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140.

Chartrand, K.M., McCormack, C.V., and Rasheed, M.A. (2011) Port Curtis and Rodds Bay seagrass monitoring program, November 2010. Report. Department of Employment, Economic Development and Innovation, QLD, Cairns, QLD, Australia.

Carter, A., McKenna, S.A., and Rasheed, M.A. (2011) Seagrass, algae and macro-invertebrate survey for proposed channel extension in the Port of Weipa. Report. Department of Employment, Economic Development and Innovation (DEEDI), Cairns, QLD, Australia.

Carter, Alex, Carton, Guy, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2011) Significant variation in spawning frequency of common coral trout, Plectropomus leopardus, on the Great Barrier Reef. In: Abstracts from the 48th Annual Conference of the Australian Marine Sciences Association. p. 35. From: AMSA 2011: 48th Annual Conference of the Australian Marine Sciences Association, 3-7 July 2011, Fremantle, WA, Australia.

Chartrand, K.M., McKenna, S.A., Petrou, K., Jimenez-Denness, I.M., Franklin, J., Sankey, T.L., Hedge, S.A., Rasheed, M.A., and Ralph, P.J. (2010) Port Curtis benthic primary producer habitat assessment and health studies update: interim report December 2010. Report. Department of Employment, Economic Development and Innovation (DEEDI), Cairns, QLD, Australia.

Chen, Yun, and Gillieson, David (2009) Evaluation of Landsat TM vegetation indices for estimating vegetation cover on semi-arid rangelands – a case study from Australia. Canadian Journal of Remote Sensing, 35 (5). pp. 435-446.

Cooper, T.F., Gilmour, J.P., and Fabricius, K.E. (2009) Bioindicators of changes in water quality on coral reefs: review and recommendations for monitoring programmes. Coral Reefs, 28 (3). pp. 589-606.

Carter, Alexandra, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2009) Regional variation in the benefit of no-take marine reserves on reproductive output of the common coral trout, Plectropomus leopardus. In: Abstracts from the Australian National Network in Marine Science Inaugural Conference. From: ANNIMS 2009: Australian National Network in Marine Science Inaugural Conference, 1-2 December 2009, Hobart, TAS, Australia.

Collier, Catherine J., Lavery, Paul S., Ralph, Peter J., and Masini, Raymond J. (2008) Physiological characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series, 353. pp. 65-79.

Coles, Robert, McKenzie, Len, Rasheed, Michael, Mellors, Jane, Taylor, Helen, Dew, Kara, McKenna, Skye, Sankey, Tonia, Carter, Alexandra, and Grech, Alana (2007) Status and trends of seagrass habitats in the Great Barrier Reef World Heritage Area. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

Collier, Catherine J., Lavery, Paul S., Masini, Raymond J., and Ralph, Peter J. (2007) Morphological, growth and meadow characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series, 337. pp. 103-115.

Carter, Alex B., Sheppard, James K., Coles, Robert G., and McKenzie, Len J. (2007) Sub-tidal seagrasses of the Torres Strait: spatial patterns and nutritional value for marine herbivores. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

Choat, Brendan, Ball, Marilyn C., Luly, Jon G., and Holtum, Joseph A.M. (2005) Hydraulic architecture of deciduous and evergreen dry rainforest tree species from north-eastern Australia. Trees, 19 (3). pp. 305-311.

Chin, Andrew, and Marshall, Paul (2003) Reactive monitoring at Nelly Bay Harbour: using environmental monitoring to manage marine construction activities. In: Wilkinson, Clive, Green, Alison, Almany, Jeanine, and Dionne, Shannon, (eds.) Monitoring Coral Reef Protected Areas. Australian Institute of Marine Science, Townsville, QLD, Australia, pp. 34-35.

Cavanagh, J.E., Burns, K.A., Brunskill, G.J., Ryan, D.A.J., and Ahokas, J.T. (2000) Induction of hepatic cytochrome P-450 1A in Pikey Bream (Acanthopagrus berda) collected from agricultural and urban catchments in far north Queensland. Marine Pollution Bulletin, 41 (7-12). pp. 377-384.

Cavanagh, J.E., Burns, K.A., Brunskill, G.J., and Coventry, R.J. (1999) Organochlorine pesticide residues in soils and sediments of the Herbert and Burdekin River regions: implications for contamination of the Great Barrier Reef. Marine Pollution Bulletin, 39 (1-12). pp. 367-375.

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Dubuc, Alexia Ida Anne (2019) Dissolved oxygen as a constraint for the structure of mangrove fish assemblages and their patterns of mangrove utilisation: a comparison between natural and disturbed mangrove ecosystems through the Australian and Caledonian coastlines. PhD thesis, James Cook University.

Death, Russell, Canning, Adam, Magierowski, Regina, and Tonkin, Jonathan (2018) Why aren't we managing water quality to protect ecological health? In: [Presented at the 31st Annual FLRC Workshop]. From: 31st Annual FLRC Workshop, 7-9 February 2018, Auckland, New Zealand.

Davies, Kalu J.E. (2017) Carbon cycle processes in tropical savannas of far North Queensland, Australia. PhD thesis, James Cook University.

Davies, Jaclyn, Shepherd, Lloyd, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring Update: February - May 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: August - November 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, J.D., Bryant, C.V., Carter, A.B., and Rasheed, M.A. (2016) Seagrasses in Port Curtis and Rodds Bay 2015: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas H., Waterhouse, Jane, and Brodie, Jon (2015) Water quality and river plume monitoring in the Great Barrier Reef: an overview of methods based on ocean colour satellite data. Remote Sensing, 7 (10). pp. 12909-12941.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Duke, Norman C., Mackenzie, Jock, Wood, Apanie, and Burrows, Damien (2015) New partnership network helps to protect Australian mangroves and saltmarsh. Wetlands Australia, National Wetlands Update (27). pp. 48-50.

Davies, Jaclyn, Taylor, Helen, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring February/ March - May 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas, Brodie, Jon, Waterhouse, Jane, and Martin, Katherine (2015) Improvements to water quality monitoring through the inclusion of ocean colour products correlated with in-situ water quality gradients for the Great Barrier Reef. In: Posters from the International Ocean Colour Science meeting. From: IOCS 2015: Second International Ocean Colour Science Meeting, 15-18 June 2015, San Fransisco, CA, USA.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Tol, Samantha, and Rasheed, Michael (2015) Port of Townsville annual monitoring and baseline survey: October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Sankey, Tonia, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Long term seagrass monitoring in Port Curtis: quarterly permanent transect monitoring progress report 2009 to 2014. Report. James Cook University, Cairns, QLD, Australia.

Duke, Norman C., and Schmitt, Klaus (2015) Mangroves: unusual forests at the seas edge. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-24.

Devlin, Michelle, Le Quesne, Will J.F., and Lyons, Brett P. (2015) The marine environment of Kuwait—emerging issues in a rapidly changing environment. Marine Pollution Bulletin, 100 (2). pp. 593-596.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring August - October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, J.N., McKenna, S.A., Jarvis, J.C., Carter, A.B., and Rasheed, M.A. (2014) Port of Townsville annual monitoring and baseline survey: October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Port Curtis and Rodds Bay Seagrass Monitoring Program. Biannual western basin & annual long term monitoring November 2012. Report. TropWATER, James Cook University, Cairns.

Davies, Jaclyn, McKenna, Skye, and Rasheed, Michael (2013) Port of Townsville long-term seagrass monitoring: September 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: January 2013 update report. Report. Centre for Tropical Water and Aquatic Ecosystem Research, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.

Dunn, Ryan J.K., Welsh, David T., Jordan, Mark A., Waltham, Nathan J., Lemckert, Charles J., and Teasdale, Peter R. (2012) Benthic metabolism and nitrogen dynamics in a sub-tropical coastal lagoon: microphytobenthos stimulate nitrification and nitrate reduction through photosynthetic oxygen evolution. Estuarine, Coastal and Shelf Science , 113. pp. 272-282.

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Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium. 21A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Davies, J.N., McCormack, C.V., and Rasheed, M.A. (2012) Gladstone Permanent Transect Seagrass Monitoring: November 2012 update report. Report. Department of Agriculture, Fisheries and Forestry (DAFF), Cairns, QLD, Australia.

Davies, J.N., McCormack, C.V., and Rasheed, M.A. (2012) Gladstone Permanent Transect Seagrass Monitoring: October 2012 update report. Report. Department of Agriculture, Fisheries and Forestry (DAFF), Cairns, QLD, Australia.

Davies, J.N., McKenna, S.A., Rasheed, M.A., and Taylor, H.A. (2012) Long-term seagrass monitoring in the Port of Thursday Island: February 2012. Report. Department of Agriculture, Fisheries and Forestry (DAFF), Cairns, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Waterhouse, Jane, Alvarez-Romero, Jorge, Abbott, Brett, and da Silva, Eduardo Teixeira (2012) Reef Rescue Marine Monitoring Program: flood plume monitoring annual report 2010-11: incorporating results from the Extreme Weather Response Program flood plume monitoring. Report. James Cook University, Townsville, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.

Duke, Norman C. (2011) Mangrove islands. In: Hopley, David, (ed.) Encyclopedia of Modern Coral Reefs. Structure, Form and Process. Springer, Dordrecht, The Netherlands, pp. 653-655.

Doupe, R.G., and Knott, M.J. (2010) Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambicus. Journal of Fish Biology, 76 (4). pp. 1019-1024.

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Doupe, Robert G., Knott, Matthew J., Schaffer, Jason, Burrows, Damien W., and Lymbery, Alan J. (2010) Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia Oreochromis mossambicus. Austral Ecology, 35 (1). pp. 24-30.

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Jain-Schaepfer, Sofia (2018) The effect of motorboat noise on early life stages of coral reef fishes. Masters (Research) thesis, James Cook University.

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McKenna, S.A., and Rasheed, M.A. (2015) Port of Hay Point & Keswick Island seagrass & benthic habitat: baseline survey: 2014. Report. James Cook University, Cairns, QLD, Australia.

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McKenna, Skye, Jarvis, Jessie, Sankey, Tonia, Reason, Carissa, Coles, Robert, and Rasheed, Michael (2015) Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event. Journal of Biosciences, 40 (2). pp. 389-398.

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McKenna, Skye, Rasheed, Michael, Coles, Robert, Carter, Alex, Jarvis, Jessie, York, Paul, Davies, Jaclyn, and Bryant, Catherine (2015) Reaping the benefits (and costs) of monitoring seagrass in Queensland Ports. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 215. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

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McKenna, S.A., Rasheed, M.A., Sankey, T., and Tol, S.J. (2013) Benthic macro-invertebrates of Cairns Harbour and Trinity Inlet: survey: 2012/13. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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McKenna, S.A., and Rasheed, M.A. (2013) Port of Karumba long-term seagrass monitoring: October 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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McKenna, Skye, Rasheed, Michael, Carter, Alexandra, and McCormack, Catherine (2013) Long-term effects of major climatic events on the resilience and capacity for recovery of a tropical seagrass habitat. In: Abstracts from the 50th Australian Marine Science Association Annual Conference. p. 169. From: AMSA 2013: 50th Australian Marine Science Association Annual Conference, 7-11 July 2013, Gold Coast, QLD, Australia.

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McKenna, Skye, Rasheed, Michael, Carter, Alex, Reason, Carissa, and Taylor, Helen (2012) Long-term effects of flooding events on the resilience and recovery of tropical seagrass habitats. In: [Presented at the 10th International Seagrass Biology Workshop]. From: ISBW10: 10th International Seagrass Biology Workshop, 25-30 November 2012, Armação dos Búzios, Brazil.

McKenna, S.A., and Rasheed, M.A. (2012) Port of Townsville long-term seagrass monitoring: October 2011. Report. Department of Employment, Economic Development and Innovation (DEEDI), Cairns, QLD, Australia.

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Mitchell, Alan, Brodie, Jon, and Furnas, Miles (2010) Report on AIMS river nutrient data collected from downstream sites in major Queensland rivers draining to the Great Barrier Reef lagoon, 1987-2000. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

McKenna, Skye, Rasheed, Michael A., Taylor, Helen, and Chartrand, Katie (2010) Understanding tropical seagrass light requirements and resilience to effectively manage seagrass health during major dredging projects. In: [Presented at the 9th World Seagrass Conference]. From: 9th World Seagrass Conference, 21-25 November 2010, Phuket, Thailand.

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Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

McKenna, S.A., Rasheed, M.A., Unsworth, R.K.F., Taylor, H.A., Chartrand, K.M., and Sankey, T.L. (2009) Long term seagrass monitoring in Cairns Harbour and Trinity Inlet: December 2008. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

Moore, Nicole J., and Gillieson, David S. (2008) Using field survey and remote sensing to assess rainforest canopy damage following Cyclone Larry. Austral Ecology, 33 (4). pp. 417-431.

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McKenna, S.A., Rasheed, M.A., Taylor, H.A., and Sankey, T.L. (2008) Implementing community based seagrass monitoring in the Wellesley Island Group. In: [Presented at Coast to Coast 2008]. From: Coast to Coast 2008, 18-22 August 2008, Darwin, NT, Australia.

McKenna, S.A., Rasheed, M.A., Sankey, T.L., and Taylor, H.A. (2008) Long term seagrass monitoring in the Port of Mourilyan: November 2007. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

McKenna, S.A., Rasheed, M.A., Unsworth, R.K.F., and Chartrand, K.M. (2008) Port of Abbot Point seagrass baseline surveys: wet & dry season 2008. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

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Mackey, Paul, Collier, Catherine J., and Lavery, Paul S. (2007) Effects of experimental reduction of light availability on the seagrass Amphibolis griffithi. Marine Ecology Progress Series, 342. pp. 117-126.

McKenna, Skye, Rasheed, Michael, and Sankey, Tonia (2007) Long term seagrass monitoring in the Port of Mourilyan: November 2006. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

McKenna, Skye, Rasheed, Michael, and Thomas, Ross (2007) Long-term seagrass monitoring in the Port of Mourilyan: November 2004. Report. Department of Primary Industries and Fisheries (DPI&F), Cairns, QLD, Australia.

Marsh, Helene, Lawler, Ivan, Hodgson, Amanda, and Grech, Alana (2006) Dugong distribution and abundance on the urban coast of Queensland: a basis for management. Final Report to Marine and Tropical Research Facility Interim Projects 2005-6. Report. UNSPECIFIED, Townsville, QLD, Australia.

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Nicolet, Katia Jane (2017) Vectors and environmental drivers of coral disease dynamics on the Great Barrier Reef. PhD thesis, James Cook University.

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