Article

Ripple, William J., Wolf, Christopher, Newsome, Thomas M., Galetti, Mauro, Alamgir, Mohammed, Crist, Eileen, Mahmoud, Mahmoud I., and Laurance, William F. (2017) World Scientists' Warning to Humanity: a second notice. BioScience, 67 (12). pp. 1026-1028.

Rapaglia, John, Zaggia, Luca, Parnell, Kevin, Lorenzetti, Giuliano, and Vafeidis, Athanasios T. (2015) Ship-wake induced sediment remobilization: effects and proposed management strategies for the Venice Lagoon. Ocean & Coastal Management, 110. pp. 1-11.

Munksgaard, Niels C., Zwart, Costijn, Kurita, Naoyuki, Bass, Adrian, Nott, Jon, and Bird, Michael I. (2015) Stable isotope anatomy of tropical cyclone Ita, North-Eastern Australia, April 2014. PLoS ONE, 10 (3). e0119728. pp. 1-15.

Parnell, Kevin, Soomere, Tarmo, Zaggia, Luca, and Rodin, Artem (2015) Dynamics of ship-induced solitary wave troughs in Venice Lagoon. Geophysical Research Abstracts, 17 (EGU2015). 7118.

Rodin, Artem, Soomere, Tarmo, Parnell, Kevin E., and Zaggia, Luca (2015) Numerical simulation of the propagation of ship-induced Riemann waves of depression into the Venice Lagoon. Proceedings of the Estonian Academy of Sciences, 64 (1). pp. 22-35.

Parnell, Kevin E., Soomere, Tarmo, Zaggia, Luca, Rodin, Artem, Lorenzetti, Giuliano, Rapaglia, John, and Scarpa, Gian Marco (2015) Ship-induced solitary Riemann waves of depression in Venice Lagoon. Physics Letters A, 379. pp. 555-559.

Okuchi, Takuo, Purevjav, Narangoo, Tomioka, Naotaka, Lin, Jung-Fu, Kuribayashi, Takahiro, Schoneveld, Louise, Hwang, Huijeong, Sakamoto, Naoya, Kawasaki, Noriyuki, and Yurimoto, Hisayoshi (2015) Synthesis of large and homogeneous single crystals of water-bearing minerals by slow cooling at deep-mantle pressures. American Mineralogist, 100 (7). pp. 1483-1492.

Perry, C.T., Smithers, S.G., Kench, P.S., and Pears, B. (2014) Impacts of Cyclone Yasi on nearshore, terrigenous sediment-dominated reefs of the central Great Barrier Reef, Australia. Geomorphology, 222. pp. 92-105.

Perry, Chris T., Murphy, Gary N., Kench, Paul S., Edinger, Evan N., Smithers, Scott G., Steneck, Robert S., and Mumby, Peter J. (2014) Changing dynamics of Caribbean reef carbonate budgets: emergence of reef bioeroders as critical controls on present and future reef growth potential. Proceedings of the Royal Society of London Series B, Biological Sciences, 281. 20142018. pp. 1-9.

Smithers, S.G., and Hoeke, R.K. (2014) Geomorphological impacts of high-latitude storm waves on low-latitude reef islands: observations of the December 2008 event on Nukutoa, Takuu, Papua New Guinea. Geomorphology, 222. pp. 106-121.

Roche, Ronan C., Perry, Christopher T., Smithers, Scott G., Leng, Melanie J., Grove, Craig A., Sloane, Hilary J., and Unsworth, Catherine E. (2014) Mid-Holocene sea surface conditions and riverine influence on the inshore Great Barrier Reef. The Holocene, 24 (8). pp. 885-897.

Perry, C.T., Smithers, S.G., and Gulliver, P. (2013) Rapid vertical accretion on a 'young' shore-detached turbid zone reef: Offshore Paluma Shoals, central Great Barrier Reef, Australia. Coral Reefs, 32 (4). pp. 1143-1148.

Lewis, Stephen E., Sloss, Craig R., Murray-Wallace, Colin V., Woodroffe, Colin D., and Smithers, Scott G. (2013) Post-glacial sea-level changes around the Australian margin: a review. Quaternary Science Reviews, 74. pp. 115-138.

Gulliver, Pauline, Palmer, Suzanne, Perry, Chris, and Smithers, Scott (2013) Are coral clasts from a turbid near-shore reef environment a suitable material for radiocarbon analysis? Radiocarbon, 55 (2-3). pp. 624-630.

Perry, Chris T., Murphy, Gary N., Kench, Paul S., Smithers, Scott G., Edinger, Evan N., Steneck, Robert S., and Mumby, Peter J. (2013) Caribbean-wide decline in carbonate production threatens coral reef growth. Nature Communications, 4 (1). 1402. pp. 1-7.

Browne, N.K., Smithers, S.G., and Perry, C.T. (2013) Spatial and temporal variations in turbidity on two inshore turbid reefs on the Great Barrier Reef, Australia. Coral Reefs, 32 (1). pp. 195-210.

Perry, C.T., Kench, P.S., Smithers, S.G., Yamano, H., O'Leary, M., and Gulliver, Pauline (2013) Time scales and modes of reef lagoon infilling in the Maldives and controls on the onset of reef island formation. Geology, 41 (10). pp. 1111-1114.

Hoeke, Ron K., McInnes, Kathleen L., Kruger, Jens C., McNaught, Rebecca J., Hunter, John R., and Smithers, Scott G. (2013) Widespread inundation of Pacific islands triggered by distant-source wind-waves. Global and Planetary Change, 108. pp. 128-138.

Kench, P.S., Smithers, S.G., and McLean, R.F. (2012) Rapid reef island formation and stability over an emerging reef flat: Bewick Cay, northern Great Barrier Reef, Australia. Geology, 40 (4). pp. 347-350.

Perry, C.T., Edinger, E.N., Kench, P.S., Murphy, G.N., Smithers, S.G., Steneck, R.S., and Mumby, P.J. (2012) Estimating rates of biologically driven coral reef framework production and erosion: a new census-based carbonate budget methodology and applications to the reefs of Bonaire. Coral Reefs, 31 (3). pp. 853-868.

Feldpausch, T.R., Lloyd, J., Lewis, S.L., Brienen, R.J.W, Gloor, M., Monteagudo Mendoza, A., López-gonzález, G., Banin, L., Abu Salim, K., Affum-baffoe, K., Alexiades, M., Almeida, S., Amaral, I., Andrade, A., Aragão, L.E.O.C., Araujo Murakami, A., Arets, E.J.M.M., Arroyo, L., Aymard C, G.A., Baker, T.R., Banki, O.S., Berry, N.J., Cardozo, N., Chave, J., Comiskey, J.A., Alvarez, E., de Oliveira, A., Di Fiore, A., Djagbletey, G., Domingues, T.F., Erwin, T.L., Fearnside, P.M., França, M.B., Freitas, M.A., Higuchi, N., Honorio C, E., Iida, Y., Jiménez, E., Kassim, A.R., Killeen, T.J., Laurance, W.F., Lovett, J.C., Malhi, Y., Marimon, B.S., Marimon-Junior, B.H., Lenza, E., Marshall, A.R., Mendoza, C., Metcalfe, D.J., Mitchard, E.T.A., Neill, D.A., Nelson, B.W., Nilus, R., Nogueira, E.M., Parada, A., Peh, K.S.H., Pena Cruz, A., Peñuela, M.C., Pitman, N.C.A., Prieto, A., Quesada, C.A., Ramírez, F., Ramírez-Angulo, H., Reitsma, J.M., Rudas, A., Saiz, G., Salomão, R.P., Schwarz, M., Silva, N., Silva-Espejo, J.E., Silveira, M., Sonké, B., Stropp, J., Taedoumg, H.E., Tan, S., ter Steege, H., Terborgh, J., Torello-Raventos, M., Van Der Heijden, G.M.F., Vásquez, R., Vilanova, E., Vos, V.A., White, L., Willcock, S., Woell, H., and Phillips, O.L. (2012) Tree height integrated into pantropical forest biomass estimates. Biogeosciences, 9. pp. 3381-3403.

Gloor, M., Gatti, L., Brienen, R., Feldpausch, T.R., Phillips, O.L., Miller, J., Ometto, J.P., Rocha, H., Baker, T., de Jong, B., Houghton, R. A., Malhi, Y., Aragao, L. E. O. C., Guyot, J. -L., Zhao, K., Jackson, R., Peylin, P., Sitch, S., Poulter, B., Lomas, M., Zaehle, S., Huntingford, C., Levy, P., and Lloyd, J. (2012) The carbon balance of South America: a review of the status, decadal trends and main determinants. Biogeosciences, 9 (12). pp. 5407-5430.

Perry, Chris T., Kench, Paul S., Smithers, Scott G., Riegl, Bernhard, Yamano, Hiroya, and O'Leary, Michael J. (2011) Implications of reef ecosystem change for the stability and maintenance of coral reef islands. Global Change Biology, 17 (12). pp. 3679-3696.

Perry, C.T., Smithers, S.G., Roche, R.C., and Wassenburg, J. (2011) Recurrent patterns of coral community and sediment facies development through successive phases of Holocene inner-shelf reef growth and decline. Marine Geology, 289 (1-4). pp. 60-71.

Soomere, Tarmo, Parnell, Kevin E., and Didenkulova, Ira (2011) Water transport in wake waves from high-speed vessels. Journal of Marine Systems, 88 (1). pp. 74-81.

Quesada, C.A., Lloyd, J., Anderson, L.O., Fyllas, N.M., Schwarz, M., and Czimczik, C.I. (2011) Soils of Amazonia with particular reference to the RAINFOR sites. Biogeosciences, 8 (6). pp. 1415-1440.

Perry, Chris T., and Smithers, Scott G. (2011) Cycles of coral reef 'turn-on', rapid growth and 'turn-off' over the past 8500 years: a context for understanding modern ecological states and trajectories. Global Change Biology, 17 (1). pp. 76-86.

Didenkulova, I., Pelinovsky, E., Soomere, T., and Parnell, K.E. (2011) Beach profile change caused by vessel wakes and wind waves in Tallinn Bay, the Baltic Sea. Journal of Coastal Research, SI 64. pp. 60-64.

Kurennoy, D., Parnell, K.E., and Soomere, T. (2011) Fast-ferry generated waves in South-West Tallinn Bay. Journal of Coastal Research, SI 64. pp. 165-169.

Roche, Ronan C., Perry, Chris T., Johnson, Kenneth G., Sultana, Kerry, Smithers, Scott G., and Thompson, Angus A. (2011) Mid-Holocene coral community data as baselines for understanding contemporary reef ecological states. Palaeogeography, Palaeoclimatology, Palaeoecology, 299 (1-2). pp. 159-167.

Viikmäe, B., Soomere, T., Parnell, K.E., and Delpeche, N. (2011) Spatial planning of shipping and offshore activities in the Baltic Sea using Lagrangian trajectories. Journal of Coastal Research, SI 64. pp. 956-960.

Zarasvandi, A., Carranza, E.J.M., Moore, F., and Rastmanesh, F. (2011) Spatio-temporal occurrences and mineralogical–geochemical characteristics of airborne dusts in Khuzestan Province (southwestern Iran). Journal of Geochemical Exploration, 111 (3). pp. 138-151.

Browne, N.K., Smithers, S.G., and Perry, C.T. (2010) Geomorphology and community structure of Middle Reef, central Great Barrier Reef, Australia: an inner-shelf turbid zone reef subject to episodic mortality events. Coral Reefs, 29 (3). pp. 683-689.

Cawte, Hayden James, and Boyd, William E. (2010) Laterite nodules: a credible source of iron ore in Iron Age Northeast Thailand? Geoarchaeology, 25 (5). pp. 626-644.

Corkeron, M.L., Norton, R., and Nelson, P.N. (2010) Spatial analysis of melioidosis distribution in a suburban area. Epidemiology and Infection, 138 (9). pp. 1346-1352.

Bird, Michael I., Charville-Mort, Peter D.J., Ascough, Philippa L., Wood, Rachel, Higham, Tom, and Apperley, David (2010) Assessment of oxygen plasma ashing as a pre-treatment for radiocarbon dating. Quaternary Geochronology, 5 (4). 435- 442.

Dawson, John L., and Smithers, Scott G. (2010) Shoreline and beach volume change between 1967 and 2007 at Raine Island, Great Barrier Reef, Australia. Global and Planetary Change, 72 (3). pp. 141-154.

Perry, C.T., and Smithers, S.G. (2010) Evidence for the episodic “turn on” and “turn off” of turbid-zone coral reefs during the late Holocene sea-level highstand. Geology, 38 (2). pp. 119-122.

Fuentes, M.M.P.B., Dawson, J.L., Smithers, Scott, Hamann, M., and Limpus, C.J. (2010) Sedimentological characteristics of key sea turtle rookeries: potential implications under projected climate change. Marine and Freshwater Research, 61 (4). pp. 464-473.

Perry, C.T., Smithers, S.G., and Johnson, K.G. (2009) Long-term coral community records from Lugger Shoal on the terrigenous inner-shelf of the central Great Barrier Reef, Australia. Coral Reefs, 28 (4). pp. 941-948.

Berkeley, Andrew, Perry, Chris, T., and Smithers, Scott G. (2009) Taphonomic signatures and patterns of test degradation on tropical, intertidal benthic foraminifera. Marine Micropaleontology , 73 (3). pp. 148-163.

Berkeley, A., Perry, C.T., Smithers, S.G., Horton, B.P., and Cundy, , A.B. (2009) Foraminiferal biofacies across mangrove-mudflat environments at Cocoa Creek, north Queensland, Australia. Marine Geology, 263 (1). pp. 64-86.

Kench, P.S., Smithers, S.G., McLean, R.F., and Nichol, S.L. (2009) Holocene reef growth in the Maldives: evidence of a mid-Holocene sea-level highstand in the central Indian Ocean. Geology, 37 (5). pp. 455-458.

Kench, P.S., Nichol, S.L., Smithers, S.G., Mclean, R.F., and Brander, R.W. (2008) Tsunami as agents of geomorphic change in mid-ocean reef islands. Geomorphology, 95 (3-4). pp. 361-383.

Perry, Chris T., Berkeley, Andrew, and Smithers, Scott G. (2008) Microfacies characteristics of a tropical, mangrove-fringed shoreline, Cleveland Bay, Queensland, Australia: sedimentary and taphonomic controls on mangrove facies development. Journal of Sedimentary Research, 78 (2). pp. 77-97.

Berkeley, A., Perry, C.T., Smithers, S.G., Horton, B.P., and Taylor, K.G. (2007) A review of the ecological and taphonomic controls on foraminiferal assemblage development in intertidal environments. Earth-Science Reviews, 83 (3-4). pp. 205-230.

Kench, Paul S., Nichol, Scott L., McLean, Roger F., Smithers, Scott G., and Brander, Robert W. (2007) Impact of the Sumatran tsunami on the geomorphology and sediments of reef islands: South Maalhosmadulu Atoll, Maldives. Atoll Research Bulletin, 544. pp. 105-134.

Perry, Christopher T., and Smithers, Scott G. (2006) Taphonomic signatures of turbid-zone reef development: examples from Paluma Shoals and Lugger Shoal, inshore central Great Barrier Reef, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 242 (1-2). pp. 1-20.

Kench, Paul S., McLean, Roger F., Brander, Robert W., Nichol, Scott L., Smithers, Scott G., Ford, Murray R., Parnell, Kevin E., and Aslam, Mohamed (2006) Geological effects of tsunami on mid-ocean atoll islands: the Maldives before and after the Sumatran tsunami. Geology, 34 (3). pp. 177-180.

Smithers, S.G., Hopley, D., and Parnell, K.E. (2006) Fringing and nearshore coral reefs of the Great Barrier Reef: episodic Holocene development and future prospects. Journal of Coastal Research, 22 (1). pp. 175-187.

Potts, D.L., Huxman, T.E., Cable, J.M., English, N.B., Ignace, D.D., Eilts, J.A., Mason, M.J., Weltzin, J.F., and Williams, D.G. (2006) Antecedent moisture and seasonal precipitation influence the response of canopy-scale carbon and water exchange to rainfall pulses in a semi-arid grassland. New Phytologist, 170 (4). pp. 849-860.

Nott, Jonathan, and Hubbert, Graeme (2005) Comparisons between topographically surveyed debris lines and modelled inundation levels from severe tropical cyclones Vance and Chris, and their geomorphic impact on the sand coast. Australian Meteorological Magazine, 54 (3). pp. 187-196.

Faithful, John, and Finlayson, Wendy (2005) Water quality assessment for sustainable agriculture in the Wet Tropics: a community-assisted approach. Marine Pollution Bulletin, 51 (1-4). pp. 99-112.

Nott, Jonathan (2004) The tsunami hypothesis—comparisons of the field evidence against the effects, on the Western Australian coast, of some of the most powerful storms on Earth. Marine Geology, 208 (1). pp. 1-12.

Nott, Jonathan (2004) Palaeotempostology: the study of prehistoric tropical cyclones-a review and implications for hazards assessment. Environment International, 30 (3). pp. 433-447.

Nott, Jonathan (2004) Washed away - people and buildings during tropical cyclones: are Queensland State and local government policies doing enough? Environmental and Planning Law Journal, 21 (3). pp. 227-238.

Nott, Jonathan, and Bryant, Edward (2003) Extreme marine inundations (tsunamis?) of coastal western Australia. Journal of Geology, 111 (6). pp. 691-706.

Nott, Jonathan (2003) Waves, coastal boulder deposits and the importance of the pre-transport setting. Earth and Planetary Science Letters, 210 (1-2). pp. 269-276.

Forsyth, A., and Nott, J. (2003) Evolution of drainage patterns on Cape York Peninsula, northeast Queensland. Australian Journal of Earth Sciences, 50 (2). pp. 145-155.

Smithers, Scott G., and Woodroffe, Colin D. (2001) Coral microatolls and 20th century sea level in the eastern Indian Ocean. Earth and Planetary Science Letters, 191 (1-2). pp. 173-184.

Thomas, Michael F., Nott, Jonathan, and Price, David M. (2001) Late Quaternary stream sedimentation in the humid tropics: a review with new data from NE Queensland, Australia. Geomorphology, 39 (1-2). pp. 53-68.

Book Chapter

Smithers, Scott G. (2009) Great Barrier Reef Islands, Geology. In: Gillespie, Rosemary G., and Clague, David A., (eds.) Encyclopedia of Islands. University of California Press, Berkeley, USA, pp. 386-388.

Carter, Robert M. (2008) Climate swings and roundabouts. In: Graham, Ian J., (ed.) A Continent on the Move: New Zealand geoscience into the 21st century. Geological Society of New Zealand, Wellington, New Zealand, pp. 249-278.

Reed, Liz, and Gillieson, Dave (2003) Mud and bones: cave deposits and environmental history in Australia. In: Hamilton-Smith, Elery, and Finlayson, Brian, (eds.) Beneath the Surface: a natural history of Australian caves. University of New South Wales Press, Sydney, NSW, Australia, pp. 89-110.

Report

Parnell, K.E., Smithers, S.G., and Ischenko, L. (2012) Understanding climate change driven coastal erosion and inundation impacts on Torres Strait communities and the development of adaptation options. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

McNamara, K.E., Smithers, S.G., Westboy, R., and Parnell, K. (2011) Limits to Climate Change Adaptation for Low-Lying Communities in the Torres Strait. Report. National Climate Change Adaptation Research Facility (NCCARF), Gold Coast, QLD, Australia.

Duce, Stephanie J., Parnell, Kevin E., Smithers, Scott G., and McNamara, Karen E. (2010) A Synthesis of Climate Change and Coastal Science to Support Adaptation in the Communities of Torres Strait. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Conference Item

Huveneers, C., Harcourt, R., Boomer, A., Hobday, A., Pederson, H., Semens, J., Stieglitz, T., Vallee, R., Webber, D., Heupel, M., Simpfendorfer, C., and Peddemors, V. (2009) The influence of environmental parameters (meteorological and oceanographic) on the performance of acoustic receivers. In: Papers from 2nd AATAMS Workshop. From: 2nd AATAMS Workshop, 2-4 November 2009, Mosman, NSW, Australia.

Book

Nelson, Paul N., Webb, Michael J., Berthelsen, Suzanne, Curry, George, Yinil, David, and Fidelis, Chris (2011) Nutritional status of cocoa in Papua New Guinea. ACIAR Technical Reports, 76 . Australian Centre for International Agricultural Research, Canberra, ACT, Australia.

Hopley, David, Smithers, Scott G., and Parnell, Kevin E. (2007) The Geomorphology of the Great Barrier Reef: development, diversity and change. Cambridge University Press, Cambridge, United Kingdom.

Thesis

Shaig, Ahmed (2008) Settlement planning for natural hazard resilience in small island states: the population and development consolidation approach. PhD thesis, James Cook University.

Turton, Stephen Michael (1991) Solar radiation regimes in rainforest understoreys, gaps and clearings, with special reference to Northeast Queensland. PhD thesis, James Cook University.