Fletcher, W.J., Wise, B.S., Joll, L.M., Hall, N.G., Fisher, E.A., Harry, A.V., Fairclough, D.V., Gaughan, D.J., Travaille, K, Molony, B.W., and Kangas, M. (2016) Refinements to harvest strategies to enable effective implementation of Ecosystem Based Fisheries Management for the multi-sector, multi-species fisheries of Western Australia. Fisheries Research, 183. 594 - 608.

Sheaves, Marcus, Sheaves, Janine, Stegemann, Krista, and Molony, Brett (2014) Resource partitioning and habitat-specific dietary plasticity of two estuarine sparid fishes increase food web complexity. Marine and Freshwater Research, 65 (2). pp. 114-123.

Sheaves, M., and Molony, B. (2013) Reproductive periodicity of the sparid, Acanthopagrus pacificus, on a hierarchy of temporal scales. Journal of Fish Biology, 82 (2). pp. 538-554.

Johnston, R., Sheaves, M., and Molony, B. (2007) Are distributions of fishes in tropical estuaries influenced by turbidity over small spatial scales? Journal of Fish Biology, 71 (3 ). pp. 657-671.

Sheaves, Marcus, Johnston, Ross, Molony, Brett, and Shephard, Greg (2007) The effect of impoundments on the structure and function of fish fauna in a highly regulated dry tropics estuary. Estuaries and Coasts, 30 (3). pp. 507-517.

Molony, Brett W., and Sheaves, Marcus J. (2002) Otolith increment widths as tools to record and assess environmental changes in estuarine areas. Marine Technology Society Journal, 36 (1). pp. 44-51.

Munday, P.L., and Molony, B.W. (2002) The energetic cost of protogynous versus protandrous sex change in the bi-directional sex-changing fish Gobiodon histrio. Marine Biology, 141 (6). pp. 1011-1017.

Molony, Brett W., and Sheaves, Marcus J. (2001) Challenges of external insemination in a tropical sparid fish, Acanthopagrus berda. Environmental Biology of Fishes, 61 (1). pp. 65-71.

Sheaves, Marcus, and Molony, Brett (2001) Coherent patterns of abundance and size of a tropical snapper in dynamic estuary systems. Wetlands Ecology and Management, 9 (5). pp. 429-439.

Sheaves, Marcus, and Molony, Brett (2000) Short-circuit in the mangrove food chain. Marine Ecology Progress Series, 199. pp. 97-109.

Omundsen, S.L., Sheaves, M.J., and Molony, B.W. (2000) Temporal population dynamics of the swarming shrimp, Acetes sibogae australis, in a tropical near-shore system. Marine and Freshwater Research, 51 (3). pp. 249-254.

Sheaves, M.J., Molony, B.W., and Tobin, A.J. (1999) Spawning migrations and local movements of a tropical sparid fish. Marine Biology, 133 (1). pp. 123-128.

Molony, B.W., and Sheaves, M.J. (1998) Otolith increment widths and lipid contents during starvation and recovery feeding in adult Ambassis vachelli (Richardson). Journal of Experimental Marine Biology and Ecology, 221. pp. 257-276.

Molony, Brett W., and Sheaves, Marcus J. (1998) Variations in condition and body constitution in a tropical estuarine fish with year-round recruitment. Mangroves and Salt Marshes , 2 (3). pp. 177-185.

McCormick, M.I., and Molony, B.W. (1992) Effects of feeding history on the growth characteristics of a reef fish at settlement. Marine Biology, 114 (1). pp. 165-173.

Molony, B.W., and Choat, J.H. (1990) Otolith increment widths and somatic growth rate: the presence of a time-lag. Journal of Fish Biology, 37 (4). pp. 541-551.