Nauheimer, Lars, Weigner, Nicholas, Joyce, Elizabeth, Crayn, Darren, Clarke, Charles, and Nargar, Katharina (2021) HybPhaser: a workflow for the detection and phasing of hybrids in target capture data sets. Applications in Plant Sciences, 9 (7). e11441.

Nauheimer, Lars, Cui, Lujing, Clarke, Charles, Crayn, Darren M., Bourke, Greg, and Nargar, Katharina (2019) Genome skimming provides well resolved plastid and nuclear phylogenies, showing patterns of deep reticulate evolution in the tropical carnivorous plant genus Nepenthes (Caryophyllales). Australian Systematic Botany, 32. pp. 243-254.

Clarke, Charles, Cross, Adam, and Rice, Barry (2018) Conservation of carnivorous plants. In: Ellison, Aaron M., and Adamec, Lubomir, (eds.) Carnivorous Plants: physiology, ecology, and evolution. Oxford University Press, New York, NY, USA, pp. 375-388.

Moran, Jonathan A., Anderson, Bruce, Chin, Lijin, Greenwood, Melinda, and Clarke, Charles (2018) Nutritional mutualisms of Nepenthes and Roridula. In: Ellison, Aaron M., and Adamec, Lubomir, (eds.) Carnivorous Plants: physiology, ecology, and evolution. Oxford University Press, New York, NY, USA, pp. 359-371.

Clarke, Charles, Schlauer, Jan, Moran, Jonathan A., and Robinson, Alastair (2018) Systematics and evolution of Nepenthes. In: Ellison, Aaron M., and Adamec, Lubomír, (eds.) Carnivorous Plants: physiology, ecology, and evolution. Oxford University Press, New York, NY, USA, pp. 58-69.

Schöner, Caroline R., Schöner, Michael G., Grafe, T. Ulmar, Clarke, Charles M., Dombrowski, Linda, Tan, Moi Chan, and Kerth, Gerald (2017) Ecological outsourcing: a pitcher plant benefits from transferring pre-digestion of prey to a bat mutualist. Journal of Ecology, 105 (2). pp. 400-411.

Gray, L.K., Clarke, Charles, Wint, G.R.William, and Moran, Jonathan A. (2017) Potential effects of climate change on members of the Palaeotropical pitcher plant family Nepenthaceae. PLoS ONE, 12 (8). e0183132.

Clarke, Charles, and Moran, Jonathan A. (2016) Climate, soils and vicariance: their roles in shaping the diversity and distribution of Nepenthes in Southeast Asia. Plant and Soil, 403 (1). pp. 37-51.

van der Ent, Antony, Sumail, Sukaibin, and Clarke, Charles (2015) Habitat differentiation of obligate ultramafic Nepenthes endemic to Mount Kinabalu and Mount Tambuyukon (Sabah, Malaysia). Plant Ecology, 216 (6). pp. 789-807.

Clarke, Charles, Lee, Ch'ien, and McPherson, Stewart (2006) Nepenthes chaniana (Nepenthaceae), a new species from north-western Borneo. Sabah Parks Nature Journal, 7. pp. 53-66.

Clarke, Charles, and Kruger, Rodney (2006) Nepenthes tenax C. Clarke & R. Kruger (Nepenthaceae), a new species from Cape York Peninsula, Queensland. Austrobaileya, 7 (2). pp. 319-324.