Garcias-Bonet, Neus, Roik, Anna, Tierney, Braden, García, Francisca C., Villela, Helena D.M., Dungan, Ashley M., Quigley, Kate M., Sweet, Michael, Berg, Gabriele, Gram, Lone, Bourne, David G., Ushijima, Blake, Sogin, Maggie, Hoj, Lone, Duarte, Gustavo, Hirt, Heribert, Smalla, Kornelia, Rosado, Alexandre S., Carvalho, Susana, Thurber, Rebecca Vega, Ziegler, Maren, Mason, Christopher E., van Oppen, Madeleine J.H., Voolstra, Christian R., and Peixoto, Raquel S. (2024) Horizon scanning the application of probiotics for wildlife. Trends in Microbiology, 32 (3). pp. 252-269.

Quigley, Kate M., Alvarez-Roa, Carlos, Raina, Jean Baptiste, Pernice, Mathieu, and van Oppen, Madeleine J.H. (2023) Heat-evolved microalgal symbionts increase thermal bleaching tolerance of coral juveniles without a trade-off against growth. Coral Reefs, 42. pp. 1227-1232.

Roper, C.D., Donelson, J.M., Ferguson, S., van Oppen, M.J.H., and Cantin, N.E. (2023) Long-term preconditioning of the coral Pocillopora acuta does not restore performance in future ocean conditions. Coral Reefs, 42. pp. 1079-1096.

Madin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina M.D., Suggett, David J., and van Oppen, Madeleine J.H. (2023) Selecting coral species for reef restoration. Journal of Applied Ecology, 60 (8). pp. 1537-1544.

McLeod, Ian M., Hein, Margaux Y., Babcock, Russell, Bay, Line, Bourne, David G., Cook, Nathan, Doropoulos, Christopher, Gibbs, Mark, Harrison, Peter, Lockie, Stewart, van Oppen, Madeleine J.H., Mattocks, Neil, Page, Cathie A., Randall, Carly J., Smith, Adam, Smith, Hillary A., Suggett, David J., Taylor, Bruce, Vella, Karen J., Wachenfeld, David, and Boström-Einarsson, Lisa (2022) Coral restoration and adaptation in Australia: The first five years. PLoS ONE, 17 (11). e0273325.

Salazar, Octavio R., Prasanna N, Arun, Cui, Guoxin, Bay, Line K., van Oppen, Madeleine J.H., Webster, Nicole S., and Aranda, Manuel (2022) The coral Acropora loripes genome reveals an alternative pathway for cysteine biosynthesis in animals. Science Advances, 8 (38). eabq0304.

Bairos-Novak, Kevin R., Hoogenboom, Mia O., van Oppen, Madeleine J., and Connolly, Sean (2021) Coral adaptation to climate change: meta-analysis reveals high heritability across multiple traits. Global Change Biology, 27 (22). pp. 5694-5710.

Bongaerts, Pim, Cooke, Ira R., Ying, Hua, Wels, Dagmar, den Haan, Stijn, Hernandez-Agreda, Alejandra, Brunner, Christopher A., Dove, Sophie, Englebert, Norbert, Eyal, Gal, Foret, Sylvain, Grinblat, Mila, Hay, Kyra B., Harii, Saki, Hayward, David C., Lin, Yu, Morana, Mihaljevi C., Moya, Aurelie, Muir, Paul, Sinniger, Frederic, Smallhorn-West, Patrick, Torda, Gergely, Ragan, Mark A., van Oppen, Madeleine J.M., and Hoegh-Guldberg, Ove (2021) Morphological stasis masks ecologically divergent coral species on tropical reefs. Current Biology, 31 (11). 2286-2298.e8.

Marhoefer, Shelby R., Zenger, Kyall R., Strugnell, Jan M., Logan, Murray, van Oppen, Madeleine J.H., Kenkel, Carly D., and Bay, Line K. (2021) Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis. Frontiers in Marine Science, 8. 704709.

Quigley, Kate M., Marzonie, Magena, Ramsby, Blake, Abrego, David, Milton, Grant, van Oppen, Madeleine J.H., and Bay, Line K. (2021) Variability in fitness trade-offs amongst coral juveniles with mixed genetic backgrounds held in the wild. Frontiers in Marine Science, 8. 636177.

Quigley, K.M., Randall, C.J., van Oppen, M.J.H., and Bay, L.K. (2020) Assessing the role of historical temperature regime and algal symbionts on the heat tolerance of coral juveniles. Biology Open, 9. bio047316.

Chakravarti, Leela J., Buerger, Patrick, Levin, Rachel A., and van Oppen, Madeleine J.H. (2020) Gene regulation underpinning increased thermal tolerance in a laboratory-evolved coral photosymbiont. Molecular Ecology, 29 (9). pp. 1684-1703.

Quigley, Kate, Bay, Line K., and van Oppen, Madeleine J. H. (2020) Genome-wide SNP analysis reveals an increase in adaptive genetic variation through selective breeding of coral. Molecular Ecology, 29 (12). pp. 2176-2188.

Cooke, Ira, Ying, Hua, Forêt, Sylvain, Bongaerts, Pim, Strugnell, Jan M., Simakov, Oleg, Zhang, Jia, Field, Matt A., Rodriguez-Lanetty, Mauricio, Bell, Sara C., Bourne, David G., van Oppen, Madeleine J.H., Ragan, Mark A., and Miller, David J. (2020) Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. Science Advances, 6 (48). eabc6318.

Jin, Young K., Kininmonth, Stuart, Lundgren, Petra B., van Oppen, Madeleine J.H., and Willis, Bette L. (2020) Predicting the spatial distribution of allele frequencies for a gene associated with tolerance to eutrophication and high temperature in the reef-building coral, Acropora millepora, on the Great Barrier Reef. Coral Reefs, 39. pp. 147-158.

Epstein, Hannah E., Smith, Hillary A., Torda, Gergely, and van Oppen, Madeleine J. H. (2019) Microbiome engineering: enhancing climate resilience in corals. Frontiers in Ecology and the Environment, 17 (2). pp. 100-108.

Riginos, Cynthia, Hock, Karlo, Matias, Ambrocio M., Mumby, Peter J., van Oppen, Madeleine J.H., and Lukoschek, Vimoksalehi (2019) Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals. Diversity and Distributions, 25 (11). pp. 1684-1696.

Buerger, P., Weynberg, K.D., Wood-charlson, E.M., Sato, Y., Willis, B.L., and van Oppen, M.J.H. (2019) Novel T4 bacteriophages associated with black band disease in corals. Environmental Microbiology, 21 (6). pp. 1969-1979.

Smith, Hillary A., Moya, Aurelie, Cantin, Neal E., van Oppen, Madeleine J.H., and Torda, Gergely (2019) Observations of simultaneous sperm release and larval planulation suggest reproductive assurance in the coral Pocillopora acuta. Frontiers in Marine Science, 6. 362.

Epstein, Hannah E., Torda, Gergely, Munday, Philip L., and van Oppen, Madeleine J.H. (2019) Parental and early life stage environments drive establishment of bacterial and dinoflagellate communities in a common coral. ISME Journal: multidisciplinary journal of microbial ecology, 13 (6). pp. 1635-1638.

Epstein, Hannah E., Torda, Gergely, and van Oppen, Madeleine J.H. (2019) Relative stability of the Pocillopora acuta microbiome throughout a thermal stress event. Coral Reefs, 38 (2). pp. 373-386.

Chakravarti, Leela J., Negri, Andrew P., and van Oppen, Madeleine J.H. (2019) Thermal and herbicide tolerances of chromerid algae and their ability to form a symbiosis with corals. Frontiers In Microbiology, 10. 173.

Quigley, Kate M., Bay, Line K., and van Oppen, Madeleine J. H. (2019) The active spread of adaptive variation for reef resilience. Ecology and Evolution, 9 (19). pp. 11122-11135.

Robbins, Steven J., Singleton, Caitlin M., Chan, Cheong Xin, Messer, Lauren F., Geers, Aileen U., Ying, Hua, Baker, Alexander, Bell, Sara C., Morrow, Kathleen M., Ragan, Mark A., Miller, David J., Forêt, Sylvain, Voolstra, Christian R., Tyson, Gene W., Bourne, David G., Ball, Eldon, Beeden, Roger, Berumen, Michael, Aranda, Manuel, Ravasi, Timothy, Bongaerts, Pim, Hoegh-Guldberg, Ove, Cooke, Ira, Leggat, Bill, Sprungala, Susanne, Fitzgerald, Anna, Shang, Catherine, Lundgren, Petra, Fyffe, Theresa, Rubino, Francesco, van Oppen, Madeleine, Weynberg, Karen, and Bells, Sara C. (2019) A genomic view of the reef-building coral Porites lutea and its microbial symbionts. Nature Microbiology, 4 (12). pp. 2090-2100.

van de Water, Jeroen A.J.M., Chaib de Mares, Maryam, Dixon, Groves B., Raina, Jean-Baptiste, Willis, Bette L., Bourne, David G., and van Oppen, Madeleine J.H. (2018) Antimicrobial and stress responses to increased temperature and bacterial pathogen challenge in the holobiont of a reef-building coral. Molecular Ecology, 27 (4). pp. 1065-1080.

Chakravarti, Leela J., and van Oppen, Madeleine J.H. (2018) Experimental evolution in coral photosymbionts as a tool to increase thermal tolerance. Frontiers in Marine Science, 5. 227.

Laffy, Patrick W., Wood-Charlson, Elisha M., Turaev, Dmitrij, Jutz, Sabrina, Pascelli, Cecilia, Botté, Emmanuelle S., Bell, Sara C., Peirce, Tyler E., Weynberg, Karen D., van Oppen, Madeleine J.H., Rattei, Thomas, and Webster, Nicole S. (2018) Reef invertebrate viromics: diversity, host specificity and functional capacity. Environmental Microbiology, 20 (6). pp. 2125-2141.

Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J.H., Voolstra, Christian R., Ragan, Mark A., and Chan, Cheong Xin (2018) Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications Biology, 1. 95.

Marcelino, Vanessa Rossetto, Morrow, Kathleen M., van Oppen, Madeleine J.H., Bourne, David G., and Verbruggen, Heroen (2017) Diversity and stability of coral endolithic microbial communities at a naturally high p CO2 reef. Molecular Ecology, 26 (19). pp. 5344-5357.

Montalvo-Proano, Jose, Buerger, Patrick, Weynberg, Karen D., and van Oppen, Madeleine J.H. (2017) A PCR-based assay targeting the major capsid protein gene of a dinorna-like ssRNA virus that infects coral photosymbionts. Frontiers In Microbiology, 8. 1665.

Torda, Gergely, Donelson, Jennifer M., Aranda, Manuel, Barshis, Daniel J., Bay, Line, Berumen, Michael L., Bourne, David G., Cantin, Neal, Foret, Sylvain, Matz, Mikhail, Miller, David J., Moya, Aurelie, Putnam, Hollie M., Ravasi, Timothy, van Oppen, Madeleine J.H., Vega Thurber, Rebecca, Vidal-Dupiol, Jeremie, Voolstra, Christian R., Watson, Sue-Ann, Whitelaw, Emma, Willis, Bette L., and Munday, Philip L. (2017) Rapid adaptive responses to climate change in corals. Nature Climate Change, 7. pp. 627-636.

Chakravarti, Leela J., Beltran, Victor H., and van Oppen, Madeleine J.H. (2017) Rapid thermal adaptation in photosymbionts of reef-building corals. Global Change Biology, 23 (11). pp. 4675-4688.

van Oppen, Madeleine J.H., Gates, Ruth D., Blackall, Linda L., Cantin, Neal, Chakravarti, Leela J., Chan, Wing Y., Cormick, Craig, Crean, Angela, Damjanovic, Katarina, Epstein, Hannah, Harrison, Peter L., Jones, Thomas A., Miller, Margaret, Pears, Rachel J., Peplow, Lesa M., Raftos, David A., Schaffelke, Britta, Stewart, Kirsten, Torda, Gergely, Wachenfeld, David, Weeks, Andrew R., and Putnam, Hollie M. (2017) Shifting paradigms in restoration of the world's coral reefs. Global Change Biology, 23 (9). pp. 3437-3448.

Buerger, Patrick, Wood-Charlson, Elisha M., Weynberg, Karen D., Willis, Bette L., and van Oppen, Madeleine J.H. (2016) CRISPR-Cas defense system and potential prophages in cyanobacteria associated with the coral black band disease. Frontiers In Microbiology, 7. 2077. pp. 1-14.

Lukoschek, Vimoksalehi, Riginos, Cynthia, and van Oppen, Madeleine J.H. (2016) Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef. Molecular Ecology, 25 (13). pp. 3065-3080.

Jin, Young K,, Lundgren, Petra, Lutz, Adrian, Raina, Jean-Baptiste, Howells, Emily J., Paley, Allison S., Willis, Bette L., and Van Oppen, Madeleine J.H. (2016) Genetic markers for antioxidant capacity in a reef-building coral. Science Advances, 2. e1500842. pp. 1-7.

Buerger, Patrick, Alvarez-Roa, Carlos, Weynberg, Karen D., Baekelandt, Sebastien, and van Oppen, Madeleine J.H. (2016) Genetic, morphological and growth characterisation of a new Roseofilum strain (Oscillatoriales, Cyanobacteria) associated with coral black band disease. PeerJ, 4. pp. 1-19.

Howells, E.J., Willis, B.L., Bay, L.K., and van Oppen, M.J.H. (2016) Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium. Molecular Ecology, 25 (12). pp. 2719-2723.

Warner, Patricia A., Willis, Bette L., and Van Oppen, Madeleine (2016) Sperm dispersal distances estimated by parentage analysis in a brooding scleractinian coral. Molecular Ecology, 25 (6). pp. 1398-1415.

van de Water, Jeroen A.J.M., Lamb, Joleah B., Heron, Scott F., Van Oppen, Madeleine J.H., and Willis, Bette L. (2016) Temporal patterns in innate immunity parameters in reef-building corals and linkages with local climatic conditions. Ecosphere, 7 (11). e01505. pp. 1-16.

Weynberg, Karen D., Voolstra, Christian R., Neave, Matthew J., Buerger, Patrick, and van Oppen, Madeleine J.H. (2015) From cholera to corals: viruses as drivers of virulence in a major coral bacterial pathogen. Scientific Reports, 5. 17889. pp. 1-9.

Lutz, Adrian, Raina, Jean-Baptiste, Motti, Cherie A., Miller, David J., and van Oppen, Madeleine J.H. (2015) Host coenzyme Q redox state is an early biomarker of thermal stress in the coral Acropora millepora. PLoS ONE, 10 (10). e0139290. pp. 1-18.

van de Water, Jeroen A.J.M., Lamb, Joleah B., van Oppen, Madeleine J.H., Willis, Bette L., and Bourne, David G. (2015) Comparative immune responses of corals to stressors associated with offshore reef-based tourist platforms. Conservation Physiology, 3 (1). cov032.

van De Water, Jeroen A.J.M., Leggat, William, Bourne, David G., Van Oppen, Madeleine J.H., Willis, Bette L., and Ainsworth, Tracy D. (2015) Elevated seawater temperatures have a limited impact on the coral immune response following physical damage. Hydrobiologia, 759 (1). pp. 201-214.

Capper, Roxana L., Jin, Young K., Lundgren, Petra B., Peplow, Lesa M., Matz, Mikhail V., and van Oppen, Madeleine J.H. (2015) Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples. BMC Genetics, 16. 62. pp. 1-13.

Voolstra, Christian R., Miller, David J., Ragan, Mark A., Hoffmann, Ary A., Hoegh-Guldberg, Ove, Bourne, David G., Ball, Eldon E., Ying, Hua, Forêt, Sylvain, Takahashi, Shunichi, Weynberg, Karen D., Van Oppen, Madeleine J.H., Morrow, Kathleen, Chan, Cheong Xin, Rosic, Nedeljka, Leggat, William, Sprungala, Susanne, Imelfort, Michael, Tyson, Gene W., Kassahn, Karin S., Lundgren, Petra, Beeden, Roger J., Ravasi, Timothy, Berumen, Michael L., Abal, Eva, and Fyffe, Theresa (2015) The ReFuGe 2020 Consortium: using "omics" approaches to explore the adaptability and resilience of coral holobionts to environmental change. Frontiers in Marine Science, 2. 68. pp. 1-8.

Warner, Patricia A., van Oppen, Madeleine J.H., and Willis, Bette L. (2015) Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity. Molecular Ecology, 24 (12). pp. 2993-3008.

van de Water, A.J.M., Ainsworth, Tracy D., Leggat, William, Bourne, David G., Willis, Bette L., and Van Oppen, Madeleine J.H. (2015) The coral immune response facilitates protection against microbes during tissue regeneration. Molecular Ecology, 24 (13). pp. 3390-3404.

van Oppen, Madeleine J.H ., Lukoschek, Vimoksalehi, Berkelmans, Ray, Peplow, Lesa M., and Jones, Alison M. (2015) A population genetic assessment of coral recovery on highly disturbed reefs of the Keppel Island archipelago in the southern Great Barrier Reef. PeerJ, 3. e1092. pp. 1-17.

Lutz, Adrian, Motti, Cherie A., Freckelton, Mamie L., Van Oppen, Madeleine J.H., Miller, David J., and Dunlap, Walter C. (2014) Simultaneous determination of coenzyme Q and plastoquinone redox states in the coral-Symbiodinium symbiosis during thermally induced bleaching. Journal of Experimental Marine Biology and Ecology, 455. pp. 1-6.

Pollock, F. Joseph, Wood-Charlson, Elisha M., van Oppen, Madeleine J.H., Bourne, David G., Willis, Bette L., and Weynberg, Karen D. (2014) Abundance and morphology of virus-like particles associated with the coral Acropora hyacinthus differ between healthy and white syndrome-infected states. Marine Ecology - Progress Series, 510. pp. 39-43.

Torda, G., Lundgren, P., Willis, B.L., and van Oppen, M.J.H. (2013) Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef. Molecular Ecology, 22 (23). pp. 5821-5834.

Cumbo, Vivian R., Baird, Andrew H., Moore, Robert B., Negri, Andrew P., Neilan, Brett A., Salih, Anya, van Oppen, Madeleine J.H., Wang, Yan, and Marquis, Christopher P. (2013) Chromera velia is endosymbiotic in larvae of the reef corals Acropora digitifera and A. tenuis. Protist, 164 (2). pp. 237-244.

Howells, Emily J., Willis, Bette L., Bay, Line K., and van Oppen, Madeleine J.H. (2013) Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef. Molecular Ecology, 22 (14). pp. 3693-3708.

Howells, Emily J., Berkelmans, Ray, van Oppen, Madeleine J.H., Willis, Bette L., and Bay, Line K. (2013) Historical thermal regimes define limits to coral acclimatization. Ecology, 94 (5). pp. 1078-1088.

Cumbo, V.R., Baird, A.H., and Van Oppen, M.J.H. (2013) The promiscuous larvae: flexibility in the establishment of symbiosis in corals. Coral Reefs, 32 (1). pp. 111-120.

Torda, G., Lundgren, P., Willis, B. L., and van Oppen, M.J.H. (2013) Revisiting the connectivity puzzle of the common coral Pocillopora damicornis. Molecular Ecology, 22 (23). pp. 5805-5820.

Torda, Gergely, Schmidt-Roach, Sebastian, Peplow, Lesa M., Lundgren, Petra, and van Oppen, Madeleine J.H. (2013) A rapid genetic assay for the identification of the most common Pocillopora damicornis genetic lineages on the Great Barrier Reef. PLoS One, 8 (3). e58447. pp. 1-5.

van de Water, Jeroen A.J.M., van Oppen, Madeleine J.H., and Willis, Bette (2012) Absence of skeleton deposition in juveniles of the scleractinian coral Acropora millepora. Coral Reefs, 31 (4). p. 1111.

Puill-Stephan, E., Willis, B.L., Abrego, D., Raina, J-B., and van Oppen, M.J.H. (2012) Allorecognition maturation in the broadcast-spawning coral Acropora millepora. Coral Reefs, 31 (4). pp. 1019-1028.

Puill-Stephan, E., van Oppen, M.J.H., Pichavant-Rafini, K., and Willis, B.L. (2012) High potential for formation and persistence of chimeras following aggregated larval settlement in the broadcast spawning coral, Acropora millepora. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1729). pp. 699-708.

Howells, E. J., Beltran, V. H., Bay, L. K., Willis, B. L., Van Oppen, M. J. H., and Larsen, N. W. (2012) Coral thermal tolerance shaped by local adaptation of photosymbionts. Nature Climate Change, 2 (2). pp. 116-120.

Puill-Stephan, Eneour, Seneca, François O., Miller, David J., van Oppen, Madeleine J.H., and Willis, Bette L. (2012) Expression of putative immune response genes during early ontogeny in the coral Acropora millepora. PLoS ONE, 7 (7). e39099. pp. 1-5.

Abrego, David, Willis, Bette L., and van Oppen, Madeleine J.H. (2012) Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLoS ONE, 7 (11). e50311. pp. 1-9.

Stat, Michael, Baker, Andrew C., Bourne, David G., Correa, Adrienne M.S., Forsman, Zac, Huggett, Megan J., Pochon, Xavier, Skillings, Derek, Toonen, Robert J., van Oppen, Madeleine J.H., and Gates, Ruth D. (2012) Molecular delineation of species in the coral holobiont. Advances in Marine Biology, 63. pp. 1-65.

Van Oppen, Madeleine J.H., Souter, Petra, Howells, Emily J., Heyward, Andrew, and Berkelmans, Ray (2011) Novel genetic diversity through somatic mutations: fuel for adaptation of reef corals? Diversity, 3 (3). pp. 405-423.

Souter, P., Bay, L.K., Andreakis, N., Császár, N., Seneca, F.O., and van Oppen, M.J.H. (2011) A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral. Molecular Ecology Resources, 11 (2). pp. 328-334.

Bongaerts, Pim, Riginos, Cynthia, Ridgway, Tyrone, Sampayo, Eugenia M., van Oppen, Madeline J.H., Englebert, Norbert, Vermeulen, Francisca, and Hoegh-Guldberg, Ove (2010) Genetic divergence across habitats in the widespread coral Seriatopora hystrix and its associated Symbiodinium. PLoS ONE, 5 (5). e10871. pp. 1-11.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Seneca, Francois O., Forêt , Sylvain, Ball, Eldon E., Smith-Keune, Carolyn, Miller, David J., and van Oppen, Madeleine J.H. (2010) Patterns of gene expression in a scleractinian coral undergoing natural bleaching. Marine Biotechnology, 12 (5). pp. 594-604.

Bay, Line, Howells, Emily J., and van Oppen, Madeleine J.H. (2009) Isolation, characterisation and cross amplification of thirteen microsatellite loci for coral endo-symbiotic dinoflagellates (Symbiodinium clade C). Conservation Genetics Resources, 1 (1). pp. 199-203.

Császár, N.B.M., Seneca, F.O., and van Oppen, M.J.H. (2009) Variation in antioxidant gene expression in the scleractinian coral Acropora millepora under laboratory thermal stress. Marine Ecology Progress Series, 392. pp. 93-102.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Bay, Line K., Ulstrup, Karin E., Nielsen, H. Bjorn, Jarmer, Hanne, Goffard, Nicolas, Willis, Bette L., Miller, David J., and van Oppen, Madeleine J.H. (2009) Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora. Molecular Ecology, 18 (14). pp. 3062-3075.

Mieog, Jos C., Olsen, Jeanine L., Berkelmans, Ray, Bleuler-Martinez, Silvia A., Willis, Bette L., and van Oppen, Madeleine J.H. (2009) The roles and interactions of symbiont, host and environment in defining coral fitness. PLoS ONE, 4 (7). p. 6364.

Cantin, N.E., van Oppen, M.J.H., Willis, B.L., Mieog, J.C., and Negri, A.P. (2009) Juvenile corals can acquire more carbon from high-performance algal symbionts. Coral Reefs, 28 (2). pp. 405-414.

Jones, G.P., Almany, G.R., Russ, G.R., Sale, P.F., Steneck, R.S., Van Oppen, M.J.H., and Willis, B.L. (2009) Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges. Coral Reefs, 28 (2). pp. 307-325.

Bay, Line K., Nielsen, H. Bjørn, Jarmer, Hanne, Seneca, Francois, and van Oppen, Madeleine J.H. (2009) Transcriptomic variation in a coral reveals pathways of clonal organisation. Marine Genomics, 2 (2). pp. 119-125.

Howells, E.J., van Oppen, M.J.H., and Willis, B.L. (2009) High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium. Coral Reefs, 28 (1). pp. 215-225.

van Oppen, Madeleine J.H., Baker, Andrew C., Coffroth, Mary Alice, and Willis, Bette L. (2009) Bleaching resistance and the role of algal endosymbionts. In: van Oppen, Madeleine J.H., and Lough, Janice M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Berlin, Germany, pp. 83-102.

Puill-Stephan, Eneour, Willis, Bette L., van Herwerden, Lynne, and van Oppen, Madeleine JH (2009) Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS ONE, 4 (1). p. 7751.

Peplow, L.M., Kingsford, M.J., Seymour, J.E., and Van Oppen, M.J.H. (2009) Eight microsatellite loci for the Irukandji syndrome-causing carybdeid jellyfish, Carukia barnesi (Cubozoa, Cnidaria). Molecular Ecology Resources, 9. pp. 670-672.

Abrego, David, van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Highly infectious symbiont dominates initial uptake in coral juveniles. Molecular Ecology, 18. pp. 3518-3531.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Littman, Raechel A., van Oppen, Madeleine J.H., and Willis, Bette L. (2008) Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef). Journal of Experimental Marine Biology and Ecology, 364 (1). pp. 48-53.

Richards, Zoe T., van Oppen, Madeleine J.H., Wallace, Carden C., Willis, Bette L., and Miller, David J. (2008) Some rare Indo-Pacific coral species are probable hybrids. Public Library of Science ONE , 3 (9). pp. 1-8.

Iguchi, Akira, Márquez, Luis M., Knack, Brent, Shinzato, Chuya, van Oppen, Madeleine J.H., Willis, Bette L., Hardie, Kate, Catmull, Julian, and Miller, David J. (2007) Apparent involvement of a β1 type integrin in coral fertilization. Marine Biotechnology, 9 (6). pp. 760-765.

Willis, Bette L., van Oppen, Madeleine J.H., Miller, David J., Vollmer, Steve V., and Ayre, David J. (2006) The role of hybridization in the evolution of reef corals. Annual Review of Ecology, Evolution, and Systematics, 37. pp. 489-517.

van Herwerden, L., Choat, J.H., Dudgeon, C.L., Carlos, G., Newman, S.J., Frisch, A., and van Oppen, M. (2006) Contrasting patterns of genetic structure in two species of the coral trout Plectropomus (Serranidae) from east and west Australia: introgressive hybridisation or ancestral polymorphisms. Molecular Phylogenetics and Evolution, 41 (2). pp. 420-435.

Smith-Keune, Carolyn, and van Oppen, Madeleine (2006) Genetic structure of a reef-building coral from thermally distinct environments on the Great Barrier Reef. Coral Reefs, 25 (3). pp. 495-502.

Little, Angela F., van Oppen, Madeleine J.H., and Willis, Bette (2004) Flexibility in algal endosymbioses shapes growth in reef corals. Science, 304 (5676). pp. 1492-1494.

van Oppen, Madeleine J.H. (2004) Mode of zooxanthella transmission does not affect zooxanthella diversity in acroporid corals. Marine Biology, 144 (1). pp. 1-7.

van Oppen, MJ.H., Koolmees, E.M., and Veron, J.E.N. (2004) Patterns of evolution in the scleractinian coral genus Montipora (Acroporidae). Marine Biology, 144 (1). pp. 9-18.

Mackenzie, J.B., Munday, P.L., Willis, B.L., Miller, D.J., and van Oppen, M.J.H. (2004) Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria; Scleractinia). Molecular Ecology, 13 (1). pp. 9-20.

Ulstrup, K.E., and Van Oppen, M.J.H. (2003) Geographic and habitat partitioning of genetically distinct zooxanthellea (Symbiodinium) in Acropora corals on the Great Barrier Reef. Molecular Ecology, 12 (12). pp. 3477-3484.

Marquez, Luis M., Miller, David J., Mackenzie, Jason B., and van Oppen, Madeleine J.H. (2003) Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Molecular Biology and Evolution, 20 (7). pp. 1077-1086.

Miller, David J., and van Oppen, Madeleine J.H. (2003) A 'fair go' for coral hybridization. Molecular Ecology, 12 (4). pp. 805-807.

Shearer, T.L., Van Oppen, M.J.H., Romano, S.L., and Wörheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology, 11 (12). pp. 2475-2487.

van Oppen, Madeleine J.H., Willis, Bette L., van Rheede, Teun, and Miller, David J. (2002) Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Molecular Ecology, 11 (8). pp. 1363-1376.

Marquez, L.M., van Oppen, M.J.H., Willis, B.L., and Miller, D.J. (2002) Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct. Proceedings of the Royal Society of London Series B, Biological Sciences, 269 (1497). pp. 1289-1294.

Marquez, L.M., van Oppen, M.J.H., Willis, B.L., Reyes, A., and Miller, D.J. (2002) The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages. Molecular Ecology, 11 (8). pp. 1339-1349.

van Oppen, Madeleine J. H., Catmull, Julian, McDonald, Brenda J, Hislop, Nikki R., Hageman, Paul J., and Miller, David J. (2002) The mitochondrial genome of Acropora tenuis (Cnidaria: Scleractinia) contains a large group I intron and a candidate control region. Journal of Molecular Evolution, 55 (1). pp. 1-13.

van Oppen, Madeleine, Palstra, Friso P., Piquet, Anouk M.-T., and Miller, David J. (2001) Patterns of coral-dinoflagellate associations in Acropora: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity. Proceedings of the Royal Society of London Series B: biological sciences, 268 (1478). pp. 1759-1767.

van Oppen, Madeleine J.H., McDonald, Brenda J., Willis, Bette, and Miller, David J. (2001) The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence? Molecular Biology and Evolution, 18 (7). pp. 1315-1329.

Van Oppen, M. (2001) In vitro establishment of symbiosis in Acropora millepora planulae. Coral Reefs, 20 (3). p. 200.

Van Oppen, M.J.H., Willis, B.L., Van Vugt, H.W.J., and Miller, D.J. (2000) Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses. Molecular Ecology, 9 (9). pp. 1363-1373.

van Oppen, M.J.H., Wörheide, G., and Takabayashi, M. (2000) Nuclear markers in evolutionary and population genetic studies of scleractinian corals and sponges. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 131-138. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.