Saleh, Alzayat, Hasan, Md Mehedi, Raadsma, Herman W., Khatkar, Mehar S., Jerry, Dean, and Rahimi Azghadi, Mostafa (2024) Prawn Morphometrics and Weight Estimation from Images using Deep Learning for Landmark Localization. Aquacultural Engineering, 106. 102391.

Khalilisamani, Nima, Thomson, Peter, Raadsma, Herman Willem, and Khatkar, Mehar Singh (2022) Estimating heritability using family-pooled phenotypic and genotypic data: a simulation study applied to aquaculture. Heredity, 128 (3). pp. 178-186.

Hasan, Md Mehedi, Raadsma, Herman W., Thomson, Peter C., Wade, Nicholas M., Jerry, Dean R., and Khatkar, Mehar S. (2022) Genetic parameters of color phenotypes of black tiger shrimp (Penaeus monodon). Frontiers in Genetics, 13. 1002346.

Huerlimann, Roger, Cowley, Jeff A., Wade, Nicholas M., Wang, Yinan, Kasinadhuni, Naga, Chan, Chon Kit Kenneth, Jabbari, Jafar S., Siemering, Kirby, Gordon, Lavinia, Tinning, Matthew, Montenegro, Juan D., Maes, Gregory E., Sellars, Melony J., Coman, Gregory J., McWilliam, Sean, Zenger, Kyall R., Khatkar, Mehar S., Raadsma, Herman W., Donovan, Dallas, Krishna, Gopala, and Jerry, Dean R. (2022) Genome assembly of the Australian black tiger shrimp (Penaeus monodon) reveals a novel fragmented IHHNV EVE sequence. G3: Genes, Genomes, Genetics, 12 (4). jkac034.

Marín-Riffo, Maria C., Raadsma, Herman W., Jerry, Dean R., Coman, Greg J., and Khatkar, Mehar S. (2021) Bioeconomic modelling of hatchery, grow-out and combined business of Australian black tiger shrimp Penaeus monodon farming. Reviews in Aquaculture, 13 (3). pp. 1695-1708.

Khalilisamani, N., Thomson, P.C., Raadsma, H., and Khatkar, M. (2021) Impact of genotypic errors with equal and unequal family contribution on accuracy of genomic prediction in aquaculture using simulation. Scientific Reports, 11 (1). 18318.

Guppy, Jarrod L., Jones, David B., Kjeldsen, Shannon R., Le Port, Agnes, Khatkar, Mehar S., Wade, Nicholas M., Sellars, Melony J., Raadsma, Herman W., Jerry, Dean R., and Zenger, Kyall R. (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21. 541.

Noble, Tansyn N., Coman, Gregory J., Wade, Nicholas M., Thomson, Peter C., Raadsma, Herman W., Khatkar, Mehar S., Guppy, Jarrod L., and Jerry, Dean R. (2020) Genetic parameters for tolerance to gill-associated virus under challenge-test conditions in the black tiger shrimp (Penaeus monodon). Aquaculture, 516. 734428.

Noble, Tansyn H., Coman, Gregory J., Wade, Nicholas M., Thomson, Peter, Raadsma, Herman W., Khatkar, Mehar S., Guppy, Jarrod L., and Jerry, Dean R. (2020) Genetic parameters of Gill-associated virus infection and body weight under commercial conditions in black tiger shrimp, Penaeus monodon. Aquaculture, 528. 735580.

Jones, David B., Nguyen, Huu, Khatkar, Mehar, Simma, David, Jerry, Dean, Raadsma, Herman, Van Der Steen, Hein, Prochaska, Jeffrey, and Zenger, Kyall (2020) The identification of a major sex QTL in the white-leg shrimp, Litopenaeus vannamei. Aquaculture, 529. 735673.

Foote, Andrew, Simma, David, Khatkar, Mehar, Raadsma, Herman, Guppy, Jarrod, Coman, Gregory, Giardina, Erika, Jerry, Dean, Zenger, Kyall, and Wade, Nicholas (2019) Considerations for maintaining family diversity in commercially mass-spawned penaeid shrimp: a case study on Penaeus monodon. Frontiers in Genetics, 10. 1127.

Kjeldsen, Shannon R., Raadsma, Herman W., Leigh, Kellie A., Tobey, Jennifer R., Phalen, David, Krockenberger, Andrew, Ellis, William A., Hynes, Emily, Higgins, Damien P., and Zenger, Kyall R. (2019) Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments. Heredity, 122 (5). pp. 525-544.

Huerlimann, Roger, Wade, Nicholas M., Gordon, Lavinia, Montenegro, Juan D., Goodall, Jake, McWilliam, Sean, Tinning, Matthew, Siemering, Kirby, Giardina, Erika, Donovan, Dallas, Sellars, Melony J., Cowley, Jeff A., Condon, Kelly, Coman, Greg J., Khatkar, Mehar S., Raadsma, Herman W., Maes, Gregory E., Zenger, Kyall R., and Jerry, Dean R. (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8. 13553.

Guppy, Jarrod L., Jones, Dave B., Jerry, Dean R., Wade, Nicholas M., Raadsma, Herman W., Huerlimann, Roger, and Zenger, Kyall R. (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9. 282.

Khatkar, M.S., Zenger, K.R., Jones, D.B., Prochaska, Jeff, van der Steen, H.A.M., Jerry, D.R., and Raadsma, H.W. (2017) Quantitative genomic analyses in the pacific whiteleg shrimp litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics (22) pp. 121-124. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Khatkar, M.S., Jones, D.B., Toole, P.B., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics. pp. 445-448. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Zenger, K.R., Khatkar, M.S., Jerry, D.R., and Raadsma, H.W. (2017) The next wave in selective breeding: implementing genomic selection in aquaculture. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 105-112. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Toole, P.B., Khatkar, M.S., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 537-540. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Zenger, K.R., Khatkar, M.S., Raadsma, H.W., van der Steen, H.A.M., Prochaska, J., Fôret, S., and Jerry, D.R. (2017) Development of a low density commercial genotyping array for the white legged shrimp, Litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 117-120. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Neuditschko, Markus, Raadsma, Herman W., Khatkar, Mehar S., Jonas, Elisabeth, Steinig, Eike J., Flury, Christine, Signer-Hasler, Heidi, Frischknecht, Mirjam, von Niederhausem, Ruedi, Leeb, Tosso, and Rieder, Stefan (2017) Identification of key contributors in complex population structures. PLoS One, 12 (5). e0177638. pp. 1-19.

Jones, David B., Jerry, Dean R., Khatkar, Mehar, Raadsma, Herman W., van der Steen, Hein, Prochaska, Jeffrey, Fôret, Sylvain, and Zenger, Kyall R. (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports, 7. 10360.

Steinig, Eike J., Neuditschko, Markus, Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2016) NETVIEW P: a network visualization tool to unravel complex population structure using genome-wide SNPs. Molecular Ecology Resources, 16 (1). pp. 216-227.

Kjeldsen, Shannon R., Zenger, Kyall R., Leigh, Kellie, Ellis, William, Tobey, Jenifer, Phalen, David, Melzer, Alistair, FitzGibbon, Sean, and Raadsma, Herman W. (2016) Genome-wide SNP loci reveal novel insights into koala (Phascolarctos cinereus) population variability across its range. Conservation Genetics, 17 (2). pp. 337-353.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Determining genetic contributions to host oyster shell growth: quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima. Aquaculture, 434. pp. 367-375.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters. Aquaculture, 434. pp. 476-485.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2013) A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection. BMC Genomics, 14. 810. pp. 1-18.

Leigh, Kellie A., Zenger, Kyall R., Tammen, Imke, and Raadsma, Herman W. (2012) Loss of genetic diversity in an outbreeding species: small population effects in the African wild dog (Lycaon pictus). Conservation Genetics, 13 (3). pp. 767-777.

Raadsma, H.W., Jonas, E., Zenger, K.R., Cavanah, C.A., Lam, M.K., and Thomson, P.C. (2009) Mapping QTL for early growth and maternal performance in sheep. In: Proceedings of the AAABG 18th Conference (18) pp. 640-643. From: 18th AAABG Conference 2009, 28 September - 1 October 2009, Barossa Valley, SA, Australia.

Raadsma, Herman W., Thomson, Peter C., Zenger, Kyall R., Cavanagh, Colin, Lam, Mary K., Jonas, Elisabeth, Jones, Marilyn, Attard, Gina, Palmer, David, and Nicholas, Frank W. (2009) Mapping quantitative trait loci (QTL) in sheep. I: a new male framework linkage map and QTL for growth rate and body weight. Genetics Selection Evolution, 41. pp. 1-10.

Khatkar, Mehar S., Nicholas, Frank W., Collins, Andrew R., Zenger, Kyall R., Cavanagh, Julie A.L., Barris, Wes, Schnabel, Robert D., Taylor, Jeremy F., and Raadsma, Herman W. (2008) Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel. BMC Genomics, 9 (187). pp. 1-18.

Raadsma, H.W., Moser, G., Crump, R.E., Khatkar, M.S., Zenger, K.R., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Solkner, J., Nicholas, F.W., Tier, B., and UNSPECIFIED (2008) Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens. Developments in Biologicals, 132. pp. 219-223.

Khatkar, Mehar S., Zenger, Kyall R., Hobbs, Matthew, Hawken, Rachel J., Cavanagh, Julie A.L., Barris, Wes, McClintock, Alexander E., McClintock, Sara, Thomson, Peter C., Tier, Bruce, Nicholas, Frank W., and Raadsma, Herman W. (2007) A primary assembly of a Bovine Haplotype Block Map based on a 15,036-Single-Nucleotide Polymorphism Panel genotyped in Holstein–Friesian Cattle. Genetics, 176. pp. 763-772.

Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., Hawken, R.J., and Raadsma, H.W. (2007) Genome-wide genetic diversity of Holstein Friesian cattle reveals new insights into Australian and global population variability, including impact of selection. Animal Genetics, 38 (1). pp. 7-14.

Raadsma, H.W., Fullard, K., Zenger, K.R., Cavanagh, J.A., Thomson, P.C., Lam, M., Piedrafita, D., Margawati, E., Widjayanti, S., Estiningsih, E., and Nicholas, F.W. (2007) Building an integrated QTL map for all major production traits in sheep based on multiple QTL mapping populations. In: Proceedings of the AAABG:17th Conference 2007 (17) pp. 127-130. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Khatkar, M.S., Zenger, K.R., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Thomson, P.C., Nicholas, F.W., Tier, B., and Raadsma, H.W. (2007) Extent of linkage disequilibrium and haplotype blocks in bovine genome using high density SNP markers. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 215-218. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Moser, G., Crump, R.E., Tier, B., Solkner, J., Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., and Raadsma, H.W. (2007) Genome based genetic evaluation and genome wide selection using supervised dimension reduction based on partial least squares. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 227-230. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Raadsma, H.W., Zenger, K.R., Khatkar, M.S., Crump, R., Moser, G., Solkner, J., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Nicholas, F.W., and Tier, B. (2007) Genome wide selection in dairy cattle based on high-density genome-wide SNP analysis: from discovery to application. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 231-234. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Crump, R.E., Tier, B., Moser, G., Solkner, J., Kerr, R.J., Woolaston, A.F., Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., and Raadsma, H.W. (2007) Genome-wide selection in dairy cattle: use of genetic algorithms in the estimation of molecular breeding values. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 304-307. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Singh, M., Lam, M., McGill, D., Thomson, P.C., Cavanagh, J.A., Zenger, K.R., and Raadsma, H.W. (2007) High resolution mapping of quantitative trait loci on ovine chromosome 3 and 20 affecting protein yield and lactation persistency. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 565-568. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Zenger, K.R., Khatkar, M.S., Tier, B., Hobbs, M., Cavanagh, J.A.L., Solkner, J., Hawken, R.J., Barris, W., and Raadsma, H.W. (2007) QC analyses of SNP array data: experience from a large population of dairy sires with 23.8 million data points. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 123-126. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Khatkar, Mehar S., Collins, Andrew, Cavanagh, Julie A.L., Hawken, Rachel J., Hobbs, Matthew, Zenger, Kyall R., Barris, Wes, McClintock, Alexander E., Thomson, Peter C., Nicholas, Frank W., and Raadsma, Herman W. (2006) A first-generation metric linkage disequilibrium map of bovine chromosome 6. Genetics, 174. pp. 79-85.

Hawken, R.J., Cavanagh, J.A.L., Meadows, J.R.S., Khatkar, M.S., Husaini, Y., Zenger, K.R., McClintock, S., McClintock, A.E., and Raadsma, H.W. (2006) Whole-genome amplification of DNA extracted from cattle semen samples. Journal of Dairy Science, 89 (6). pp. 2217-2221.