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Article

Andutta, Fernando P., Ridd, Peter V., and Wolanski, E. (2013) The age and the flushing time of the Great Barrier Reef Waters. Continental Shelf Research, 53 . pp. 11-19.

Stieglitz, Thomas C., Clark, Jordan F., and Hancock, Gary J. (2013) The mangrove pump: the tidal flushing of animal burrows in a tropical mangrove forest determined from radionuclide budgets. Geochimica et Cosmochimica Acta, 102 . pp. 12-22.

Orpin, Alan R., and Ridd, Peter V. (2012) Exposure of inshore corals to suspended sediments due to wave-resuspension and river plumes in the central Great Barrier Reef: a reappraisal. Continental Shelf Research, 47 . pp. 55-67.

Browne, Nicola K., Smithers, Scott G., Perry, Chris T., and Ridd, Peter V. (2012) A field-based technique for measuring sediment flux on coral reefs: application to turbid reefs on the Great Barrier Reef. Journal of Coastal Research, 28 (5). pp. 1247-1262.

McClanahan, Tim R., Donner, Simon D., Maynard, Jeffrey A., MacNeil, M. Aaron, Graham, Nicholas A.J., Maina, Joseph, Baker, Andrew C., Alemu, Jahson B., Beger, Maria, Campbell, Stuart J., Darling, Emily S., Eakin, C. Mark, Heron, Scott F., Jupiter, Stacy D., Lundquist, Carolyn J., McLeod, Elizabeth, Mumby, Peter J., Paddack, Michelle J., Selig, Elizabeth R., and van Woesik, Robert (2012) Prioritizing key resilience indicators to support coral reef management in a changing climate. PLoS ONE, 7 (8). pp. 1-7.

Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2012) Chronic herbicide exposures affect the sensitivity and community structure of tropical benthic microalgae. Marine Pollution Bulletin, 65 (4-9). pp. 363-372.

de Miranda, Luiz Bruner, Olle, Eugenio Dalle, Bergamo, Alessandro Luvizon, dos Santos Silva, Lourval, and Pinheiro Andutta, Fernando (2012) Circulation and salt intrusion in the Piacaguera Channel, Santos (SP). Brazilian Journal of Oceanography, 60 (1). pp. 11-23.

Ridd, Peter V., Larcombe, Piers, Stieglitz, Thomas, and Orpin, Alan (2012) Comment on "Towards ecologically relevant targets for river pollutant loads to the Great Barrier Reef" by F.J. Kroon, Marine Pollution Bulletin 65 (4-9) 261-266. Marine Pollution Bulletin . pp. 1-4.

Povinec, P.P., Burnett, W.C., Beck, A., Bokuniewicz, H., Charette, M., Gonneea, M.E., Groening, M., Ishitobi, T., Kontar, E., Kwong, L. Liong Wee, Marie, D.E.P., Moore, W.S., Oberdorfer, J.A., Peterson, R., Ramessur, R., Rapaglia, J., Stieglitz, T., and Top, Z. (2012) Isotopic, geophysical and biogeochemical investigation of submarine groundwater discharge: IAEA-UNESCO intercomparison exercise at Mauritius Island. Journal of Environmental Radioactivity, 104 . pp. 24-45.

Schubert, Michael, Paschke, Albrecht, Bednorz, Denise, Buerkin, Walter, and Stieglitz, Thomas (2012) Kinetics of the water/air phase transition of radon and its implication on detection of radon-in-water concentrations: practical assessment of different on-site radon extraction methods. Environmental Science and Technology, 46 (16). pp. 8945-8951.

Kennedy, Karen, Devlin, Michelle, Bentley, Christie, Lee-Chue, Kristie, Paxman, Chris, Carter, Steve, Lewis, Stephen, Brodie, Jon, Guy, Ellia, Vardy, Suzanne, Martin, Katherine C., Jones, Alison, Packett, Robert, and Mueller, Jochen F. (2012) The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides. Marine Pollution Bulletin, 64 (7). pp. 1495-1507.

Andutta, Fernando P., Ridd, Peter V., and Wolanski, Eric (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305.

Hoeke, Ron, Storlazzi, Curt, and Ridd, Peter (2011) Hydrodynamics of a bathymetrically complex fringing coral reef embayment: wave climate, in situ observations, and wave prediction. Journal of Geophysical Research: Oceans, 116 . pp. 1-19.

McKinna, Lachlan I.W., Furnas, Miles J., and Ridd, Peter V. (2011) A simple, binary classification algorithm for the detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery. Limnology and Oceanography: Methods, 9 . pp. 50-66.

Situ, Rong, Brown, Richard J., and Loberto, Anthony (2010) Experimental study of the concentration field of discharge from a boat propeller. Environmental Fluid Mechanics, 10 (6). pp. 657-675.

Eakin, C. Mark, Morgan, Jessica A., Heron, Scott F., Smith, Tyler B., Lui, Gang, Alvarez-Filip, Lorenzo, Baca, Bart, Bartels, Erich, Bastidas, Carolina, Bouchon, Claude, Brandt, Marilyn, Bruckner, Andrew W., Bunkley-Williams, Lucy, Cameron, Andrew, Causey, Billy D., Chiappone, Mark, Christensen, Tyler R.L., Crabbe, M. James C., Day, Owen, de la Guardia, Elena, Díaz-Pulido, Guillermo, DiResta, Daniel, Gil-Agudelo, Diego L., Gilliam, David S., Ginsburg, Robert N., Gore, Shannon, Guzmán, Héctor M., Hendee, James C., Hernández-Delgado, Edwin A., Husain, Ellen, Jeffrey, Christopher F.G., Jones, Ross J., Jordán-Dahlgren, Eric, Kaufman, Les S., Kline, David I., Kramer, Philip A., Lang, Judith C., Lirman, Diego, Mallela, Jennie, Manfrino, Carrie, Maréchal, Jean-Phillipe, Marks, Ken, Mihaly, Jennifer, Miller, W. Jeff, Mueller, Erich M., Muller, Erinn M., Toro, Carlos A. Orozco, Oxenford, Hazel A., Ponce-Taylor, Daniel, Quinn, Norman, Ritchie, Kim B., Rodríguez, Sebastián, Ramírez, Alberto Rodríguez, Romano, Sandra, Samhouri, Jameal F., Sánchez, Juan A., Schmahl, George P., Shank, Burton V., Skirving, William J., Steiner, Sascha C.C., Villamizar, Estrella, Walsh, Shiela M., Walter, Cory, Weil, Ernesto, Williams, Ernest H., Roberson, Kimberly Woody, and Yusuf, Yusri (2010) Caribbean corals in crisis: record thermal stress, bleaching, and mortality in 2005. PLoS ONE, 5 (11). e13969.

Heron, S.F., Steinberg, C.R., Heron, M.L., Mantovanelli, A., Jaffrés, Jasmine, Skirving, W.J., McAllister, F., Rigby, P., Wisdom, D., and Bainbridge, S. (2010) Advancing ocean monitoring near coral reefs. EOS, 91 (41). pp. 369-380.

Heron, Scott F., Willis, Bette L., Skirving, William J., Eakin, C. Mark, Page, Cathie A., and Miller, Ian R. (2010) Summer hot snaps and winter conditions: modelling white syndrome outbreaks on Great Barrier Reef corals. PLoS ONE, 5 (8). pp. 1-11.

Stieglitz, Thomas C., Cook, Peter G., and Burnett, William C. (2010) Inferring coastal processes from regional-scale mapping of 222Radon and salinity: examples from the Great Barrier Reef, Australia. Journal of Environmental Radioactivity, 101 (7). pp. 544-552.

Hollins, Suzanne E., Heron, Scott F., and Ridd, Peter V. (2009) Methods for monitoring tidal flushing in large animal burrows in tropical mangrove swamps. Estuarine, Coastal and Shelf Science, 82 (4). pp. 615-620.

Kelpsaite, L., Parnell, K.E., and Soomere, T. (2009) Energy pollution: the relative influence of wind-wave and vessel-wake energy in Tallinn Bay, the Baltic Sea. Journal of Coastal Research, 56 (1). pp. 812-816.

Torsvik, T., Didenkulova, I., Soomere, T., and Parnell, Kevin E. (2009) Variability in spatial patterns of long nonlinear waves from fast ferries in Tallinn Bay. Nonlinear Processes in Geophysics, 16 (2). pp. 351-363.

Kurennoy, D., Soomere, T., and Parnell, K.E. (2009) Variability in the properties of wakes generated by high-speed ferries. Journal of Coastal Research, 56 (1). pp. 519-523.

Perry, C.T., Smithers, S.G., Palmer, S.E., Larcombe, P., and Johnson, K.G. (2008) 1200 year paleoecological record of coral community development from the terrigenous inner shelf of the Great Barrier Reef. Geology, 36 (9). pp. 691-694.

Visvanathan, C., Phong, D.D., and Jegatheesan, V. (2008) Hydrogenotrophic denitrification of highly saline aquaculture wastewater using hollow fiber membrane bioreactor. Environmental Technology, 29 (6). pp. 701-707.

Visvanathan, C., Hung, N.Q., and Jegatheesan, V. (2008) Hydrogenotrophic denitrification of synthetic aquaculture wastewater using membrane bioreactor. Process Biochemistry, 43 (6). pp. 673-682.

Jamal Khan, S., Visvanathan, C., Jegatheesan, V., and BenAim, R. (2008) Influence of mechanical mixing rates on sludge characteristics and membrane fouling in MBRs. Separation Science and Technology, 43 (7). pp. 1826-1838.

Kench, P.S., Nichol, S.L., Smithers, S.G., Mclean, R.F., and Brander, R.W. (2008) Tsunami as agents of geomorphic change in mid-ocean reef islands. Geomorphology, 95 (3-4). pp. 361-383.

Pulefou, T., Jegatheesan, V., Steicke, C., and Kim, S-H. (2008) Application of submerged membrane bioreactor (SMBR) for aquaculture effluent reuse. Desalination, 221 (1-3). pp. 534-542.

Perry, Chris T., Berkeley, Andrew, and Smithers, Scott G. (2008) Microfacies characteristics of a tropical, mangrove-fringed shoreline, Cleveland Bay, Queensland, Australia: sedimentary and taphonomic controls on mangrove facies development. Journal of Sedimentary Research, 78 (2). pp. 77-97.

Stieglitz, Thomas, Taniguchi, Makoto, and Neylon, Skyler (2008) Spatial variability of submarine groundwater discharge, Ubatuba, Brazil. Estuarine, Coastal and Shelf Science , 76 (3). pp. 493-500.

Berkeley, A., Perry, C.T., Smithers, S.G., Horton, B.P., and Taylor, K.G. (2007) A review of the ecological and taphonomic controls on foraminiferal assemblage development in intertidal environments. Earth-Science Reviews, 83 (3-4). pp. 205-230.

Perry, Christopher T., and Smithers, Scott G. (2006) Taphonomic signatures of turbid-zone reef development: examples from Paluma Shoals and Lugger Shoal, inshore central Great Barrier Reef, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 242 (1-2). pp. 1-20.

Burnett, W.C., Aggarwal, P.K, Aureli, A., Bokuniewicz, H., Cable, J.E., Charette, M.A., Kontar, E., Krupa, S., Kulkarni, K.M., Loveless, A., Moore, W.S., Oberdorfer, J.A., Oliveira, J., Ozyurt, N., Povinec, P., Privitera, A.M.G., Rajar, R., Ramessur, R.T., Stieglitz, T., Taniguchi, M., Turner, J.V., and Scholten, J. (2006) Quantifying submarine groundwater discharge in the coastal zone via multiple methods. Science of the Total Environment, 367 (2-3). pp. 498-543.

Kench, Paul S., McLean, Roger F., Brander, Robert W., Nichol, Scott L., Smithers, Scott G., Ford, Murray R., Parnell, Kevin E., and Aslam, Mohamed (2006) Geological effects of tsunami on mid-ocean atoll islands: the Maldives before and after the Sumatran tsunami. Geology, 34 (3). pp. 177-180.

Hopley, David (2006) Coral reef growth on the shelf margin of the Great Barrier Reef with special reference to the Pompey Complex. Journal of Coastal Research, 22 (1). pp. 150-158.

Smithers, S.G., Hopley, D., and Parnell, K.E. (2006) Fringing and nearshore coral reefs of the Great Barrier Reef: episodic Holocene development and future prospects. Journal of Coastal Research, 22 (1). pp. 175-187.

Hancock, Gary J., Webster, Ian T., and Stieglitz, Thomas C. (2006) Horizontal mixing of Great Barrier Reef waters: offshore diffusivity determined from radium isotope distribution. Journal of Geophysical Research: oceans, 111 . - .

Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.

Fulton, Christopher J., and Bellwood, David R. (2005) Wave-induced water motion and the functional implications for coral reef fish assemblages. Limnology and Oceanography, 50 (1). pp. 255-264.

Anthony, Kenneth R.N., Ridd, Peter V., Orpin, Alan R., Larcombe, Piers, and Lough, Janice (2004) Temporal variation of light availability in coastal benthic habitats : effects of clouds, turbidity, and tides. Limnology and Oceanography, 49 (6). pp. 2201-2211.

Orpin, Alan R., Ridd, Peter V., Thomas, Séverine, Anthony, Kenneth R.N., Marshall, Paul, and Oliver, Jamie (2004) Natural turbidity variability and weather forecasts in risk management of anthropogenic sediment discharge near sensitive environments. Marine Pollution Bulletin, 49 (7). pp. 602-612.

Halide, Halmar, Brinkman, Richard, and Ridd, Peter (2004) Designing bamboo wave attenuators for mangrove plantations. Indian Journal of Marine Sciences, 33 (3). pp. 220-225.

Nott, Jonathan (2004) The tsunami hypothesis—comparisons of the field evidence against the effects, on the Western Australian coast, of some of the most powerful storms on Earth. Marine Geology, 208 (1). pp. 1-12.

Da Silva, Eduardo Teixeira, Ridd, Michael, Klumpp, David, and Ridd, Peter (2004) Relative contribution of food and water to the Cd burden in Balanus amphitrite in an urban tidal creek discharging into the Great Barrier Reef lagoon. Estuarine, Coastal and Shelf Science , 60 (2). pp. 313-324.

Thomas, Séverine, and Ridd, Peter V. (2004) Review of methods to measure short time scale sediment accumulation. Marine Geology, 207 (1-4). pp. 95-114.

Thomas, Séverine, Ridd, Peter V., and Renagi, Ora (2003) Laboratory investigation on the effect of particle size, water flow and bottom surface roughness upon the response of an upward-pointing optical backscatter sensor to sediment accumulation. Continental Shelf Research, 23 (16). pp. 1545-1557.

Heron, S.F., and Ridd, P.V. (2003) The effect of water density variations on the tidal flushing of animal burrows. Estuarine, Coastal and Shelf Science , 58 (1). pp. 137-145.

Thomas, Severine, Ridd, Peter V., and Day, Geoff (2003) Turbidity regimes over fringing coral reefs near a mining site at Lihir island, Papua New Guinea. Marine Pollution Bulletin, 46 (8). pp. 1006-1014.

Halide, Halmar, Ridd, Peter V., Peterson, Eric L., and Foster, David (2003) Assessing sediment removal capacity of vegetated and non-vegetated settling ponds in prawn farms. Aquacultural Engineering, 27 (4). pp. 295-314.

Bryce, S., Larcombe, P., and Ridd, P.V. (2003) Hydrodynamic and geomorphological controls on suspended sediment transport in mangrove creek systems, a case study: Cocoa Creek, Townsville, Australia. Estuarine, Coastal and Shelf Science, 56 (3-4). pp. 415-431.

Thomas, Severine, Ridd, Peter V., and Smith, Peter J. (2002) New instrumentation for sediment dynamics studies. Marine Technology Society Journal, 36 (1). pp. 55-58.

Heap, A.D., Dickens, G.R., and Stewart, L.K. (2001) Late Holocene sediment in Nara Inlet, central Great Barrier Reef platform, Australia: sediment accumulation on the middle shelf of a tropical mixed clastic/carbonate system. Marine Geology, 176 (1-4). pp. 39-54.

Larcombe, P., Costen, A.R., and Woolfe, K.J. (2001) The hydrodynamic and sedimentary setting of nearshore coral reefs, central Great Barrier Reef shelf, Australia: Paluma Shoals, a case study. Sedimentology Online, 48 (4). pp. 811-835.

Faithful, John W., and Griffiths, Dilwyn J. (2000) Turbid flow through a tropical reservoir (Lake Dalrymple, Queensland, Australia): responses to a summer storm event. Lakes and Reservoirs: research and management, 5 (4). pp. 231-247.

Book

Hopley, David, Smithers, Scott G., and Parnell, Kevin E. (2007) The Geomorphology of the Great Barrier Reef: development, diversity and change. Cambridge University Press, Cambridge, United Kingdom.

Book Chapter

Wolanski, Eric, Andutta, Fernando, and Delhez, Eric (2012) Estuarine hydrology. In: Encyclopedia of Lakes and Reservoirs. Encyclopedia of Earth Sciences Series . Springer-Verlag, pp. 238-249.

Stieglitz, Thomas (2011) Submarine groundwater discharge. In: Encyclopedia of Modern Coral Reefs: structure, form and process. Encyclopedia of Earth Sciences . Springer, Dordrecht, Netherlands, p. 1052.

Conference Item

Heron, Mal, Wyatt, Lucy, Atwater, Daniel, and Prytz, Arnstein (2012) The Australian coastal ocean radar network: lessons learned in the establishment phase. OCEANS, 2012 - YEOSU OCEANS, 2012 - YEOSU. , 21-24 May 2012, Yeosu, Korea (South).

Wyatt, Lucy (2012) Use of HF radar for marine renewable applications. OCEANS, 2012 - YEOSU OCEANS, 2012. , 21-24 May 2012, Yeosu, Korea (South).

Heron, M.L., Savidge, Dana, and Blanton, Jack (2012) VHF radar measurements of flow in a salt marsh creek. Oceans Oceans 2012. , 14-19 October 2012, Hampton Road, VA, USA.

Heron, Mal, Prytz, Arnstein, and Steinberg, Craig (2011) Application of VHF high resolution radar to evaluating circulation around a seawater intake facility. Proccedings of OCEANS 2011 OCEANS 2011 MTS/IEEE Kona. , 19-22 September 2011, Waikoloa, HI, USA.

Stieglitz, T., and Ridd, P. (2011) Of holes and depressions on the great barrier reef coast - and a physict's toolbox to study them. Abstracts from the Third Nereis Park Conference: benthic processes in a globally changing environment Third Nereis Park Conference: benthic processes in a globally changing environment. , 29-31 August 2011, Kristineberg, Sweden.

Stieglitz, T.C., Hancock, G., Clarke, J., and Cook, P.G. (2011) Radioisotopes and coastal research in the Great Barrier Reef. Abstracts from 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference. , 12-14 July 2011, Cairns, QLD, Australia.

Stieglitz, T.C., Clark, J., and Hancock, G. (2011) Rapid seawater circulation through animal burrows in mangrove forests: a significant source of saline groundwater to the tropical coastal ocean. Goldschmidt Conference Abstracts Goldschmidt 2011 Earth, Life and Fire. , 14-19 August 2011, Prague, Czech Republic.

Stieglitz, T.C., Holliday, D., Ridd, P.V., Cook, P.G., and Read, W.W. (2010) Geological Controls and tidal forcing of submarine groundwater discharge from a confined aquifer, Elim Beach, northeast Australia. Abstracts from ASLO & NABS 2010 Summer Meeting ASLO & NABS: 2010 Summer Meeting. , 6 - 11 June 2010, Santa Fe, NM, USA.

Stieglitz, Thomas, van Beek, Pieter, and Souhaut, Marc (2010) Multi-tracer reconnaissance of submarine groundwater discharge along the French Mediterranean coast. Abstracts from Radium and Radon Isotapes as Environmental Tracers Radium and Radon Conference 2010: Radium and Radon Isotopes as Environmental Tracers. , 14 - 19 March 2010, Jerusalem, Israel.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. , 13–17 July 2009, Cairns, QLD, Australia.

Dao, Vinh, Dux, Peter, and Morris, Peter (2007) Effectiveness of permeability-reducing admixtures in marine concrete. Proceedings of Concrete under severe conditions - environment and loading CONSEC'07 5th International conference on concrete under severe conditions of environment and loading. , 4-6 June 2007, Tours, France.

Read, W.W., Stieglitz, T., and Holliday, D. (2006) Modeling submarine groundwater discharge at Elim Beach. Pacem in Maribus XXXI Conference Proceedings Pacem in Maribus XXXI Conference: Building Bridges Towards Integrated Oceans Governance: Linking Ocean Science, Engineering, Technology and Policy. , 31 October - 3 November 2005, Townsville, QLD, Australia.

Thesis

Hoeke, Ron Karl (2010) An investigation of wave-dominated coral reef hydrodynamics. PhD thesis, James Cook University.

Mao, Yadan (2009) Unsteady natural convection in near-shore waters. PhD thesis, James Cook University.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Preite, Carrie (2008) Phytoplankton dynamics of riverine water holes in the dry tropics of north Queensland, Australia. PhD thesis, James Cook University.

Broughton, John D. (2008) Element behaviour in inundated actual acid sulfate soils, East Trinity, Cairns. PhD thesis, James Cook University.

Muirhead, Elisabeth Knowles (2008) Polybrominated diphenyl ethers: levels in Townsville sediments, depuration and (anti-)estrogenic effects in Barramundi (Lates calcarifer). Masters (Research) thesis, James Cook University.

Blanchette, Melanie Lise (2006) The use of esterase activity as a measure of copper toxicity in marine microalgae. Masters (Research) thesis, James Cook University.

Susilo, Adi (2004) Groundwater flow in arid tropical tidal wetlands and estuaries. PhD thesis, James Cook University.