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Harry, Alastair V., Tobin, Andrew J., and Simpfendorfer, Colin A. (2013) Age, growth and reproductive biology of the spot-tail shark, Carcharhinus sorrah, and the Australian blacktip shark,C. tilstoni, from the Great Barrier Reef World Heritage Area, north-eastern Australia. Marine and Freshwater Research, 64 (4). pp. 277-293.

Smart, Jonathon J., Harry, Alastair V., Tobin, Andrew J., and Simpfendorfer, Colin A. (2013) Overcoming the constraints of low sample sizes to produce age and growth data for rare or threatened sharks. Aquatic Conservation, 23 (1). pp. 124-134.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Sutton, Stephen G., and Begg, Gavin A. (2013) The role of subsistence fishing in the hybrid economy of an indigenous community. Marine Policy, 37 . pp. 183-191.

Olaganathan, Rajee, and Patterson, Jamila (2013) Effect of anthraquinone dyes on the carbohydrate, protein and lipid content in the muscle of Channa punctatus and Cyprinus carpio. International Journal of Pharmaceutical Applications, 4 (1). pp. 11-19.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Begg, Gavin A., and Sutton, Stephen G. (2013) Quantifying changes in the subsistence reef fishery of indigenous communities in Torres Strait, Australia. Fisheries Research, 137 . pp. 50-58.

Heupel, Michelle R., Simpfendorfer, Colin A., Olsen, Esben M., and Moland, Even (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433 . pp. 131-137.

Moore, Bradley R., Simpfendorfer, Colin A., Newman, Stephen J., Stapley, Jason M., Allsop, Quentin, Sellin, Michelle J., and Welch, David J. (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: king threadfin, Polydactylus macrochir. Fisheries Research, 125-126 . pp. 214-224.

Olsen, Esben Moland, Heupel, Michelle R., Simpfendorfer, Colin A., and Moland, Even (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562.

Chin, Andrew, Tobin, Andrew, Simpfendorfer, Colin, and Heupel, Michelle (2012) Reef sharks and inshore habitats: patterns of occurrence and implications for vulnerability. Marine Ecology Progress Series, 460 . pp. 115-125.

Ballagh, Aaron C., Welch, David J., Newman, Stephen J., Allsop, Quentin, and Stapley, Jason M. (2012) Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics. Fisheries Research, 121-122 . pp. 63-72.

Morgan, Jess A.T., Harry, Alastair V., Welch, David J., Street, Raewyn, White, Jimmy, Geraghty, Pascal T., Macbeth, William G., Tobin, Andrew, Simpfendorfer, Colin A., and Ovenden, Jennifer R. (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209.

Lédée, Elodie J.I., Sutton, Stephen G., Tobin, Renae C., and De Freitas, Debora M. (2012) Responses and adaptation strategies of commercial and charter fishers to zoning changes in the Great Barrier Reef Marine Park. Marine Policy, 36 (1). pp. 226-234.

Harry, A.V., Morgan, J.A.T., Ovenden, J.R., Tobin, A.J., Welch, D.J., and Simpfendorfer, C.A. (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81 (4). pp. 1-9.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology .

Norton, Shelley L., Wiley, Tonya R., Carlson, John K., Frick, Amanda L., Poulakis, Gregg R., and Simpfendorfer, Colin A. (2012) Designating critical habitat for juvenile endangered smalltooth sawfish in the United States. Marine and Coastal Fisheries: dynamics, management, and ecosystem science, 4 (1). pp. 473-480.

Yates, Peter M., Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2012) Diversity in young shark habitats provides the potential for portfolio effects. Marine Ecology Progress Series, 458 . pp. 269-281.

Waltrick, Daniela, Awruch, Cynthia, and Simpfendorfer, Colin (2012) Embryonic diapause in the elasmobranchs. Reviews in Fish Biology and Fisheries, 22 (4). pp. 849-859.

Sweet, Michael, Kirkham, Nigel, Bendall, Mark, Currey, Leanne, Bythell, John, and Heupel, Michelle (2012) Evidence of melanoma in wild marine fish populations. PLoS One, 7 (8). e41989.

Knip, D.M., Heupel, M.R., and Simpfendorfer, C.A. (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784.

Olaganathan, Rajee, and Patterson, Jamila (2012) Histological changes in the target organs of channa punctatus after exposure to anthraquinone vat dyes. Journal of Ecotoxicology and Environmental Monitoring, 22 (5). pp. 443-449.

Moore, B.R., Welch, D.J., Newman, S.J., and Lester, R.J.G. (2012) Parasites as indicators of movement and population connectivity of a non-diadromous, tropical estuarine teleost: king threadfin Polydactylus macrochir. Journal of Fish Biology, 81 (1). pp. 230-252.

Simpfendorfer, Colin A., Olsen, Esben M., Heupel, Michelle, and Moland, Even (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) To roam or to home: site fidelity in a tropical coastal shark. Marine Biology, 159 (8). pp. 1647-1657.

Kinney, Michael J., Hussey, Nigel E., Fisk, Aaron T., Tobin, Andrew J., and Simpfendorfer, Colin A. (2011) Communal or competitive? Stable isotope analysis provides evidence of resource partitioning within a communal shark nursery. Marine Ecology Progress Series, 439 . pp. 263-276.

Miller, Penny A., Fitch, Alison J., Gardner, Michael, Hutson, Kate S., and Mair, Graham (2011) Genetic population structure of Yellowtail Kingfish (Seriola lalandi) in temperate Australasian waters inferred from microsatellite markers and mitochondrial DNA. Aquaculture, 319 (3-4). pp. 328-336.

Chapman, Demian S., Simpfendorfer, Colin A., Wiley, Tonya R., Poulakis, Gregg R., Curtis, Caitlin, Tringali, Michael, Carlson, John K., and Feldheim, Kevin A. (2011) Genetic diversity despite population collapse in a critically endangered marine fish: the smalltooth sawfish (Pristis pectinata). Journal of Heredity, 102 (6). pp. 643-652.

Broderick, D., Ovenden, J.R., Buckworth, R.C., Newman, S.J., Lester, R.J.G., and Welch, D.J. (2011) Genetic population structure of grey mackerel Scomberomorus semifasciatus in northern Australia. Journal of Fish Biology, 79 (3). pp. 633-661.

Morgan, Jess A.T., Welch, David J., Harry, Alistair V., Street, Raewyn, Broderick, Damien, and Ovenden, Jennifer R. (2011) A mitochondrial species identification assay for Australian blacktip sharks (Carcharhinus tilstoni, C. limbatus and C. amblyrhynchoides) using real-time PCR and high-resolution melt analysis. Molecular Ecology, 11 (5). pp. 813-819.

Ovenden, Jennifer R., Morgan, Jess A.T., Street, Raewyn, Tobin, Andrew, Simpfendorfer, Colin, Macbeth, William, and Welch, David (2011) Negligible evidence for regional genetic population structure for two shark species Rhizoprionodon acutus (Rüppell, 1837) and Sphyrna lewini (Griffith & Smith, 1834) with contrasting biology. Marine Biology, 158 (7). pp. 1497-1509.

Harry, Alastair V., Tobin, Andrew J., Simpfendorfer, Colin A., Welch, David J., Mapleston, Amos, White, Jimmy, Williams, Ashley J., and Stapley, Jason (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2011) Shark biology, ecology and management: introduction. Marine and Freshwater Research, 62 (6). p. 517.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters. Marine and Freshwater Research, 62 (6). pp. 658-667.

Simpfendorfer, C.A., Heupel, M.R., White, W.T., and Dulvy, N.K. (2011) The importance of research and public opinion to conservation management of sharks and rays: a synthesis. Marine and Freshwater Research, 62 (6). pp. 518-527.

Harry, A.V., MacBeth, W.G., Gutteridge, A.N., and Simpfendorfer, C.A. (2011) The life histories of endangered hammerhead sharks (Carcharhiniformes, Sphyrnidae) from the east coast of Australia. Journal of Fish Biology, 78 (7). pp. 2026-2051.

Williams, Ashley J., Little, L. Richard, and Begg, Gavin A. (2011) Balancing indigenous and non-indigenous commercial objectives in a coral reef finfish fishery. ICES Journal of Marine Science, 68 (5). pp. 834-847.

Heupel, Michelle R., Knip, Danielle M., de Lestang, Paul, Allsop, Quentin A., and Grace, Blair S. (2011) Short-term movement of barramundi in a seasonally closed freshwater habitat. Aquatic Biology, 12 (2). pp. 147-155.

Olin, Jill A., Hussey, Nigel E., Fritts, Mark, Heupel, Michelle R., Simpfendorfer, Colin A., Poulakis, Gregg R., and Fisk, Aaron T. (2011) Maternal meddling in neonatal sharks: implications for interpreting stable isotopes in young animals. Rapid Communications in Mass Spectrometry, 25 (8). pp. 1008-1016.

Bednarek, Angela T., Cooper , Andrew B., Cresswell, Katherine A., Mangel, Marc, Satterthwaite, William H., Simpfendorfer, Colin A., and Wiedenmann, John R. (2011) The certainty of uncertainty in marine conservation and what to do about it. Bulletin of Marine Science, 87 (2). pp. 177-195.

Bang Jensen, Britt, Holopainen, Riikka, Tapiovaara, Hannele, and Ariel, Ellen (2011) Susceptibility of pike-perch Sander lucioperca to a panel of ranavirus isolates. Aquaculture, 313 (1-4). pp. 24-30.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425 . pp. 233-246.

Moore, B.R., Stapley, J., Allsop, Q., Newman, S.J., Ballagh, A., Welch, D.J., and Lester, R.J.G. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia, as indicated by parasites. Journal of Fish Biology, 78 (3). pp. 923-936.

Simpfendorfer, Colin A., Yeiser, Beau G., Wiley, Tonya R., Poulakis, Gregg R., Stevens, Philip W., and Heupel, Michelle R. (2011) Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring. PLoS One, 6 (2). pp. 1-12.

Russ, Garry R., and Alcala, Angel C. (2011) Enhanced biodiversity beyond marine reserve boundaries: the cup spillith over. Ecological Applications, 21 (1). pp. 241-250.

Holopainen, Riikka, Honkanen, Jarno, Bang Jensen, Britt, Ariel, Ellen, and Tapiovaara, Hannele (2011) Quantitation of ranaviruses in cell culture and tissue samples. Journal of Virological Methods, 171 (1). pp. 225-233.

Hutson, K.S., Brock, E.L., and Steer, M.A. (2011) Spatial variation in parasite abundance: evidence of geographical population structuring in southern garfish Hyporhamphus melanochir. Journal of Fish Biology, 78 (1). pp. 166-182.

Poulakis, Gregg R., Stevens, Philip W., Timmers, Amy A., Wiley, Tonya R., and Simpfendorfer, Colin A. (2011) Abiotic affinities and spatiotemporal distribution of the endangered smalltooth sawfish, Pristis pectinata, in a south-western Florida nursery. Marine and Freshwater Research, 62 (10). pp. 1165-1177.

Awruch, C.A., Simpfendorfer, C., and Pankhurst, N.W. (2011) Evaluation and use of a portable field kit for measuring whole-blood lactate in sharks. Marine and Freshwater Research, 62 (6). pp. 694-699.

Ballagh, Aaron C., Welch, David, Williams, Ashley J., Mapleston, Amos, Tobin, Andrew, and Marton, Nicholas (2011) Integrating methods for determining length-at-age to improve growth estimates for two large scombrids. Fishery Bulletin, 109 (1). pp. 90-100.

Moore, B.R., Welch, D.J., and Simpfendorfer, C.A. (2011) Spatial patterns in the demography of a large estuarine teleost: king threadfin, Polydactylus macrochir. Marine and Freshwater Research, 62 (8). pp. 937-951.

Newman, S.J., Pember, M.B., Rome, B.M., Mitsopoulos, G.E.A., Skepper, C.L., Allsop, Q., Saunders, T., Ballagh, A.C., van Herwerden, L., Garrett, R.N., Gribble, N.A., Stapley, J.M., Meeuwig, J.J., Moore, B.R., and Welch, D.J. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate. Fisheries Management and Ecology, 18 (3). pp. 246-257.

Newman, Stephen J., Allsop, Quentin, Ballagh, Aaron C., Garrett, Rod N., Gribble, Neil, Meeuwig, Jessica J., Mitsopoulos, Gabby E.A., Moore, Bradley R., Pember, Matthew B., Rome, Ben M., Saunders, Thor, Skepper, Craig L., Stapley, Jason M., van Herwerden, Lynne, and Welch, David J. (2010) Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure. Journal of Experimental Marine Biology and Ecology, 396 (1). pp. 53-60.

Harry, Alastair V., Simpfendorfer, Colin A., and Tobin, Andrew J. (2010) Improving age, growth, and maturity estimates for aseasonally reproducing chondrichthyans. Fisheries Research, 106 (3). pp. 393-403.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Incorporating local tenure in the systematic design of marine protected area networks. Conservation Letters, 3 (6). pp. 445-453.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

MacNeil, M. Aaron, Graham, Nicholas A.J., Cinner, Joshua E., Dulvy, Nicholas K., Loring, Philip A., Jennings, Simon, Polunin, Nicholas V., Fisk, Aaron T., and McClanahan, Tim R. (2010) Transitional states in marine fisheries: adapting to predicted global change. Proceedings of the Royal Society of London Series B, Biological Sciences, 365 (1558). pp. 3753-3763.

Fabinyi, Michael, Knudsen, Magne, and Segi, Shio (2010) Social complexity, ethnography and coastal resource management in the Philippines. Coastal Management, 38 (6). pp. 617-632.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Pollnac, Richard, Christie, Patrick, Cinner, Joshua E., Dalton, Tracey, Daw, Tim M., Forrester, Graham E., Graham, Nicholas A.J., and McClanahan, Timothy R. (2010) Marine reserves as linked social–ecological systems. Proceedings of the National Academy of Sciences, 107 (43). pp. 18262-18265.

Marriot, Ross J., Mapstone, Bruce D., Ballagh, Aaron C., Currey, Leanne M., Penny, Anne, Williams, Ashley J., Jackson, Gary, Lou, Dongchun, Mapleston, Amos J., Jarvis, Nicholas D.C., Keay, Ian S., and Newman, Stephen J. (2010) Accepting final counts from repeat readings of otoliths: should a common criterion apply to the age estimation of fish? Marine and Freshwater Research, 61 (10). pp. 1171-1184.

Heupel, M.R., and Simpfendorfer, C.A. (2010) Science or slaughter: need for lethal sampling of sharks. Conservation Biology, 24 (5). pp. 1212-1218.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Russ, Garry R., and Alcala, Angel C. (2010) Decadal-scale rebuilding of predator biomass in Philippine marine reserves. Oecologia, 163 (4). pp. 1103-1106.

Simpfendorfer, Colin A., Wiley, Tonya R., and Yeiser, Beau G. (2010) Improving conservation planning for an endangered sawfish using data from acoustic telemetry. Biological Conservation, 143 (6). pp. 1460-1469.

Fabinyi, Michael (2010) The intensification of fishing and the rise of tourism: competing coastal livelihoods in the Calamianes Islands, Philippines. Human Ecology, 38 (3). pp. 415-427.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Shortcuts for marine conservation planning: the effectiveness of socioeconomic data surrogates. Biological Conservation, 143 (5). pp. 1236-1244.

Williams, Ashley J., Little, L. Richard, Punt, André E., Mapstone, Bruce D., Davies, Campbell R., and Heupel, Michelle R. (2010) Exploring movement patterns of an exploited coral reef fish when tagging data are limited. Marine Ecology Progress Series, 405 . pp. 87-99.

Brown, I., Sumpton, W., McLennan, M., Mayer, D., Campbell, M., Kirkwood, J., Butcher, A., Halliday, I., Mapleston, A., Welch, D., Begg, G.A., and Sawynok, B. (2010) An improved technique for estimating short-term survival of released line-caught fish, and an application comparing barotrauma-relief methods in red emperor (Lutjanus sebae Cuvier 1816). Journal of Experimental Marine Biology and Ecology, 385 (1-2). pp. 1-7.

Heupel, Michelle R., Simpfendorfer, Colin A., and Fitzpatrick, Richard (2010) Large–scale movement and reef fidelity of grey reef sharks. PLoS ONE, 5 (3). pp. 1-5.

Griffiths, Shane P., Fry, Gary C., Manson, Fiona J., and Lou, Dong C. (2010) Age and growth of longtail tuna (Thunnus tonggol) in tropical and temperate waters of the central Indo-Pacific. ICES Journal of Marine Science, 67 (1). pp. 125-134.

Cortés, Enric, Arocha, Freddy, Beerkircher, Lawrence, Carvalho, Felipe, Domingo, Andrés, Heupel, Michelle, Holtzhausen, Hannes, Santos, Miguel N., Ribera, Marta, and Simpfendorfer, Colin (2010) Ecological risk assessment of pelagic sharks caught in Atlantic pelagic longline fisheries. Aquatic Living Resources, 23 (1). pp. 25-34.

Heupel, Michelle R., Williams, Ashley J., Welch, David J., Davies, Campbell R., Penny, Ann, Kritzer, Jacob P., Marriott, Ross J., and Mapstone, Bruce D. (2010) Demographic characteristics of exploited tropical lutjanids: a comparative analysis. Fishery Bulletin, 108 (4). pp. 420-432.

Heupel, Michelle R., Williams, Ashley, Welch, David J., Davies, Campbell R., Adams, Samantha, Carlos, Gary, and Mapstone, Bruce D. (2010) Demography of a large exploited grouper, Plectropomus laevis: implications for fisheries management. Marine and Freshwater Research, 61 (2). pp. 184-195.

Feldheim, Kevin A., Chapman, Demian D., Simpfendorfer, Colin A., Richards, Vincent P., Shivji, Mahmood S., Wiley, Tonya R., Poulakis, Gregg R., Carlson, John K., Eng, Rowena, and Sagarese, Skyler (2010) Genetic tools to support the conservation of the endangered smalltooth sawfish, Pristis pectinata. Conservation Genetics Resources, 2 (1). pp. 105-113.

Heupel, Michelle R., Yeiser, Beau G., Collins, Angela B., Ortega, Lori, and Simpfendorfer, Colin A. (2010) Long-term presence and movement patterns of juvenile bull sharks, Carcharhinus leucas, in an estuarine river system. Marine and Freshwater Research, 61 (1). pp. 1-10.

Johnson, Johanna E., and Welch, David J. (2010) Marine fisheries management in a changing climate: a review of vulnerability and future options. Reviews in Fisheries Science, 18 (1). pp. 106-124.

Welch, David J., Mapstone, Bruce D., Davies, Campbell C., and Russ, Garry R. (2010) Spatial and fishing effects on sampling gear biases in a tropical reef line fishery. Marine and Freshwater Research, 61 (10). pp. 1134-1146.

Newman, Stephen J., Wright, Ian W., Rome, Ben M., Mackie, Michael C., Lewis, Paul D., Buckworth, Rik C., Ballagh, Aaron C., Garrett, Rod N., Stapley, Jason, Broderick, Damien, Ovenden, Jennifer R., and Welch, David J. (2010) Stock structure of Grey Mackerel, Scomberomorus semifasciatus (Pisces: Scombridae) across northern Australia, based on otolith stable isotope chemistry. Environmental Biology of Fishes, 89 (3-4). pp. 357-367.

Wiley, Tonya R., and Simpfendorfer, Colin A. (2010) Using public encounter data to direct recovery efforts for the endangered smalltooth sawfish Pristis pectinata. Endangered Species Research, 12 (3). pp. 179-191.

Charters, Robbie A., Lester, Robert J.G., Buckworth, Rik C., Newman, Stephen J., Ovenden, Jennifer R., Broderick, Damien, Kravchuck, Olena, Ballagh, Aaron, and Welch, David J. (2010) The stock structure of grey mackerel Scomberomorus semifasciatus in Australia as inferred from its parasite fauna. Fisheries Research, 101 (1-2). pp. 94-99.

McClanahan, Tim R., Graham, Nicholas A.J., Wilson, Shaun, Letourner, Yves, and Fisher, Rebecca (2009) Effects of fisheries closure size, age, and history of compliance on coral reef fish communities in the western Indian Ocean. Marine Ecology Progress Series, 396 . pp. 99-109.

Little, L. Richard, Punt, André E., Mapstone, Bruce D., Begg, Gavin A., Goldman, Barry, and Ellis, Nick (2009) Different responses to area closures and effort controls for sedentary and migratory harvested species in a multispecies coral reef linefishery. ICES Journal of Marine Science, 66 (9). pp. 1931-1941.

van Herwerden, Lynne, Aspden, William J., Newman, Stephen J., Pegg, Graham G., Briskey, Leica, and Sinclair, William (2009) A comparison of the population genetics of Lethrinus miniatus and Lutjanus sebae from the east and west coasts of Australia: evidence for panmixia and isolation. Fisheries Research, 100 (2). pp. 148-155.

Little, L. Richard, Punt, Andre E., Mapstone, Bruce D., Begg, Gavin A., Goldman, Barry, and Williams, Ashley J. (2009) An agent-based model for simulating trading of multi-species fisheries quota. Ecological Modelling, 220 (23). pp. 3404-3412.

Stockwell, Brian, Jadloc, Claro Renato L., Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2009) Trophic and benthic responses to no-take marine reserve protection in the Philippines. Marine Ecology Progress Series, 389 . pp. 1-15.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Sutton, Stephen G., and Tobin, Renae C. (2009) Recreational fishers’ attitudes towards the 2004 rezoning of the Great Barrier Reef Marine Park. Environmental Conservation, 36 (3). pp. 245-252.

Balston, Jacqueline (2009) An analysis of the impacts of long-term climate variability on the commercial barramundi (Lates calcarifer) fishery of north-east Queensland, Australia. Fisheries Research, 99 (2). pp. 83-89.

Carter, A.B., Williams, A.J., and Russ, G.R. (2009) Increased accuracy of batch fecundity estimates using oocyte stage ratios in Plectropomus leopardus. Journal of Fish Biology, 75 (3). pp. 716-722.

van Herwerden, Lynne, Choat, J. Howard, Newman, Stephen J., Leray, Mattieu, and Hillersoy, Grethe (2009) Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management. Marine Biology, 156 (8). pp. 1595-1607.

Thorson, James T., and Simpfendorfer, Colin A. (2009) Gear selectivity and sample size effects on growth curve selection in shark age and growth studies. Fisheries Research, 98 (1-3). pp. 75-84.

Williams, Ashley J., Davies, Campbell R., Mapstone, Bruce D., Currey, Leanne M., Welch, David J., Begg, Gavin, A., Ballagh, Aaron C., Choat, J. Howard, Murchie, Cameron D., and Simpfendorfer, Colin A. (2009) Age-based demography of humpback grouper Cromileptes altivelis: implications for fisheries management and conservation. Endangered Species Research, 9 (1). pp. 67-79.

Puill-Stephan, Eneour, Willis, Bette L., van Herwerden, Lynne, and van Oppen, Madeleine JH (2009) Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS ONE, 4 (1). p. 7751.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Horne, John B., McIlwain, Jennifer L., and Van Herwerden, Lynne (2009) Isolation of 15 new polymorphic microsatellite markers from the blue-spine unicornfish Naso unicornis. Conservation Genetics Resources, 2 . pp. 1-4.

Simpfendorfer, Colin A., and Kyne, Peter M. (2009) Limited potential to recover from overfishing raises concerns for deep-sea sharks, rays and chimaeras. Environmental Conservation, 36 . pp. 97-103.

Balston, Jacqueline (2009) Short-term climate variability and the commercial barramundi (Lates calcarifer) fishery of north-east Queensland, Australia. Marine and Freshwater Research, 60 (9). pp. 912-923.

Trip, Elisabeth L., Choat, J. Howard, Wilson, David T., and Robertson, D. Ross (2008) Inter-oceanic analysis of demographic variation in a widely distributed Indo-Pacific coral reef fish. Marine Ecology Progress Series, 373 . pp. 97-109.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Williams, Ashley J., Ballagh, Aaron C., Begg, Gavin A., Murchie, Cameron D., and Currey, Leanne M. (2008) Harvest patterns and effort dynamics of indigenous and non-indigenous commercial sectors of the eastern Torres Strait reef line fishery. Continental Shelf Research, 28 (16). pp. 2117-2128.

Williams, Ashley J., Currey, Leanne M., Begg, Gavin A., Murchie, Cameron D., and Ballagh, Aaron C. (2008) Population biology of coral trout species in eastern Torres Strait: implications for fishery management. Continental Shelf Research, 28 (16). pp. 2129-2142.

Russ, Garry R., Cheal, Alistair J., Dolman, Andrew M., Emslie, Michael J., Evans, Richard D., Miller, Ian, Sweatman, Hugh, and Williamson, David H. (2008) Rapid increase in fish numbers follows creation of world's largest marine reserve network. Current Biology, 18 (12). pp. 514-515.

Yeiser, B.G., Heupel, M.R., and Simpfendorfer, C. A. (2008) Residence and movement patterns of bull (Carcharhinus leucas) and lemon (Negaprion brevirostris) sharks within a coastal estuary. Marine and Freshwater Research, 59 . pp. 489-501.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

Welch, David J., Mapstone, Bruce D., and Begg, Gavin A. (2008) Spatial and temporal variation and effects of changes in management in discard rates from the commercial reef line fishery of the Great Barrier Reef, Australia. Fisheries Research, 90 (1-3). pp. 247-260.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Al-Habsi, S. H., Sweeting, C. J., Polunin, N. V. C., and Graham, Nicholas (2008) δ15N and δ13C elucidation of size structured food webs in a Western Arabian Sea demersal trawl assemblage. Marine Ecology Progress Series, 353 . pp. 55-63.

Mapstone, B.D., Little, L.R., Punt, A.E., Davies, C.R., Smith, A.D.M., Pantus, F., McDonald, A.D., Williams, A.J., and Jones, A. (2008) Management strategy evaluation for line fishing in the Great Barrier Reef: balancing conservation and multi-sector fishery objectives. Fisheries Research, 94 (3). pp. 315-329.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, A.M. (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Hutson, Kate S., Ernst, Ingo, Mooney, Allan J., and Whittington, Ian D. (2007) Metazoan parasite assemblages of wild Seriola lalandi (Carangidae) from eastern and southern Australia. Parasitology International, 56 (2). pp. 95-105.

Graham, Nicholas A.J., Wilson, Shaun K., Jennings, Simon, Polunin, Nicholas V.C., Robinson, Jan, Bijoux, Jude P., and Daw, Tim M. (2007) Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and ecosystems. Conservation Biology, 21 (5). pp. 1291-1300.

Hutson, Kate S., and Whittington, Ian D. (2006) Paradeontacylix godfreyi n. sp. (Digenea: Sanguinicolidae) from the heart of wild Seriola lalandi (Perciformes: Carangidae)in southern Australia. Zootaxa, 1151 . pp. 55-68.

Heupel, Michelle R., Simpfendorfer, Colin A., Collins, Angela B., and Tyminski, John P. (2006) Residency and movement patterns of bonnethead sharks, Sphyrna tiburo, in a large Florida estuary. Environmental Biology of Fishes, 76 . pp. 47-67.

McAuley, Rory B., Simpfendorfer, Colin A., Hyndes, Glenn .A., Allison, Rick R., Chidlow, Justin A., Newman, Stephen J., and Lenanton, Rod C.J. (2006) Validated age and growth of the sandbar shark, Carcharhinus plumbeus (Nardo, 1827) in the waters of Western Australia. Environmental Biology of Fishes, 77 . pp. 385-400.

McClanahan, T.R., and Graham, N. A. J. (2005) Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Marine Ecology Progress Series, 294 . pp. 241-248.

Keeney, D.B., Heupel, M.R., Hueter, R.E., and Heist, E.J. (2005) Microsatellite and mitochondrial DNA analyses of the genetic structure of blacktip shark (Carcharhinus limbatus) nurseries in the northwestern Atlantic, Gulf of Mexico and Caribbean Sea. Molecular Ecology, 14 (7). pp. 1911-1923.

Graham, N.A.J., Dulvy, N.K., Jennings, S., and Polunin, N.V.C. (2005) Size spectra as indicators of fishing effects on coral reef fish assemblages. Coral Reefs, 24 (1). pp. 118-124.

Tobin, Renae (2005) Competition and conflict between recreational and commercial gillnet fishers in north Queensland estuaries: perception or reality? Fishing for More: A student-stakeholder workshop on the biology, ecology, sociology and economics of fisheries, 1 . pp. 84-108.

Burgess, George H., Beerkircher, Lawrence R., Cailliet, Gregor M., Carlson, John K., Cortes, Enric, Goldman, Kenneth J., Grubbs, R. Dean, Musick, John A., Musyl, Michael K., and Simpfendorfer, Colin A. (2005) Is the collapse of shark populations in the Northwest Atlantic Ocean and Gulf of Mexico real? Fisheries, 30 (10). pp. 19-26.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

Dulvy, N.K, Polunin, N.V.C., Mill, A.C., and Graham, N.A.J. (2004) Size structural change in lightly exploited coral reef fish communities: evidence for weak indirect effects. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 446-475.

Hueter, R.E., Heupel, M.R., Heist, E.J., and Keeney, D.B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science , 35 . pp. 239-247.

Keeney, D.B., Heupel, M.R., Hueter, R.E., and Heist, E.J. (2003) Genetic evidence of stock structure among blacktip shark, Carcharhinus limbatus, continental nurseries along the U.S. Atlantic and Gulf of Mexico. Marine Biology, 143 (6). pp. 1039-1046.

McAuley, Rory B., and Simpfendorfer, Colin A. (2003) Catch composition of Western Australia’s temperate demersal gillnet and demersal longline fisheries, 1994 to 1999. Western Australian Fisheries Research Reports, 146 . pp. 1-84.

Book

Tobin, Renae (2010) Recreational Only Fishing Areas: have they reduced conflict and improved recreational catches in North Queensland, Australia? Lambert Academic Publishing, Saarbrücken, Germany.

Book Chapter

Simpfendorfer, Colin A., and Heupel, Michelle R. (2012) Assessing habitat use and movement. In: Biology of Sharks and Their Relatives. CRC Marine Biology Series . CRC Press, London, UK, pp. 579-601.

Heimann, Kirsten, Capper, Angela, and Sparrow, Leanne (2011) Ocean surface warming: impact on toxic benthic dinoflagellates causing ciguatera. In: eLS. Wiley-Blackwell, pp. 1-8.

Tobin, Renae C., and Sutton, Stephen G. (2011) Perceived benefits and costs of Recreational Only Fishing Areas to the recreational and commercial estuarine fishery within north Queensland. In: The Angler and the Environment: social, economic, biological and ethical dimensions. Proceedings of the fifth world recreational fishing conference. American Fisheries Society Symposium, 75 . American Fisheries Society, Bethesda, MD, USA, pp. 125-138.

Kyne, Peter M., and Simpfendorfer, Colin A. (2010) Deepwater Chondrichthyans. In: Sharks and their Relatives II: Biodiversity, Adaptive Physiology, and Conservation. CRC Marine Biology Series . CRC Press, Taylor and Francis Group, Boca Raton, Florida, USA, pp. 37-113.

Heupel, Michelle (2007) Exiting Terra Ceia Bay: examination of cues stimulating migration from a summer nursery area. In: Shark Nursery Grounds of the Gulf of Mexico and the East Coast Waters of the United States. American Fisheries Society, Bethesda MD, pp. 265-280.

Simpfendorfer, Colin A. (2005) Demographic Models: life tables, matrix models and rebound potential. In: Management Techniques for Elasmobranch Fisheries. FAO Fisheries Technical Paper (474). Food and Agriculture Organization of the United Nations, Rome, Italy, pp. 143-153.

Simpfendorfer, Colin A., Bonfil, Ramon, and Latour, Robert J. (2005) Mortality estimation. In: Management Techniques for Elasmobranch Fisheries. FAO Fisheries Technical Paper (474). Food and Agriculture Organization of the United Nations, Rome, Italy, pp. 165-185.

Pre Print

Currey, L.M., Williams, A.J., Mapstone, B.D., Davies, C.R., Carlos, G., Welch, D.J., Simpfendorfer, C.A., Ballagh, A.C., Penny, A.L., Grandecourt, E.M., Mapleston, A., Wiebkin, A.S., and Bean, K. Comparative biology of tropical Lethrinus species (Emperors): challenges for multi-species management. [Pre Print] (Unpublished)

Report

Welch, D.J., Ovenden, J., Simpfendorfer, C., Tobin, A., Morgan, J.A.T., Street, R., White, J., Harry, A., Schroeder, R., and Macbeth, W.G. (2011) Stock structure of exploited shark species in north-eastern Australia. Report to the Fisheries Research & Development Corporation, Project 2007/035. Fishing & Fisheries Research Centre Technical Report No. 12. Report. Fisheries Research and Development Corporation, James Cook University, Townsville, QLD, Australia.

Tobin, A., Schlaff, A., Tobin, R., Penny, A., Ayling, T., Ayling, A, Krause, B., Welch, D., Sutton, S., Sawynok, B., Marshall, N., Marshall, P., and Maynard, J. (2010) Adapting to Change: Minimising Uncertainty about the Effects of Rapidly-Changing Environmental Conditions on the Queensland Coral Reef Fin Fish Fishery. Report. Fishing and Fisheries Research Centre, James Cook University, Townsville, Qld, Australia.

Tobin, R.C., Sutton, S.G., Penny, A., Williams, L., Maroske, J., and Nilsson, J. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part A: Commercial Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD. Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part D: Seafood Consumers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Nilsson, J.A., Sutton, S.G., and Tobin, R.C. (2010) A Community Survey of Climate Change and the Great Barrier Reef. Report. Reef and Rainforest Research Centre, Cairns.

Tobin, R.C., Sutton, S.G., and Penny, A.L. (2010) Towards Evaluating the Socio-economic Impacts of Changes to Queensland’s Inshore Fishery Management. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Welch, D.J., Buckworth, R.C., Ovenden, J.R., Newman, S.J., Broderick, D., Lester, R.J.G., Ballagh, A.C., Stapley, J., Charters, R.A., and Gribble, N.A. (2009) Determination of management units for grey mackerel fisheries in northern Australia. Report. James Cook University, Townsville, Queensland, Australia.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

Tobin, R.C., Pears, R., Marshall, N., Marriott, R., Busilacchi, S., and Bergenius, M.A.J. (2005) Fishing for More: a student-stakeholder workshop on the biology, ecology, sociology and economics of fisheries. Report. CRC Reef Research Centre , Townsville, QLD, Australia.

Thesis

Knip, Danielle Melissa (2011) Spatial ecology of mobile predators in a nearshore tropical environment and its implication for marine protected areas. PhD thesis, James Cook University.

Harry, Alastair Varley (2011) Life histories of commercially important tropical sharks from the Great Barrier Reef World Heritage Area. PhD thesis, James Cook University.

Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.

Muldoon, Geoffrey James (2009) Innovation and capacity in fisheries: value-adding and the emergence of the live reef fish trade as part of the Great Barrier Reef reef-line fishery. PhD thesis, James Cook University.

Busilacchi, Sara (2008) The subsistence coral reef fish fishery in the Torres Strait: monitoring protocols and assessment. PhD thesis, James Cook University.

Muirhead, Elisabeth Knowles (2008) Polybrominated diphenyl ethers: levels in Townsville sediments, depuration and (anti-)estrogenic effects in Barramundi (Lates calcarifer). Masters (Research) thesis, James Cook University.

Marriott, Ross James (2005) Population biology, dynamics and their implications for management of red bass: a large, long-lived reef fish. PhD thesis, James Cook University.

Phelan, Michael John (2005) Indigenous subsistence fishing at Injinoo Aboriginal Community, northern Cape York Peninsula. Masters (Research) thesis, James Cook University.