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Athukorala, Ajani, Donnelly, Camilla M., Pavan, Silvia, Nematollahzadeh, Sepehr, Djossou, Victoria Atalie, Nath, Babu, Helbig, Karla J., Di Iorio, Enzo, McSharry, Brian P., Alvisi, Gualtiero, Forwood, Jade K., and Sarker, Subir (2024) Structural and functional characterization of siadenovirus core protein VII nuclear localization demonstrates the existence of multiple nuclear transport pathways. Journal of General Virology, 105 (1). 001928.

Athukorala, Ajani, Lacasse, Claude, Curtiss, Jeffrey B., Phalen, David N., and Sarker, Subir (2023) Characterisation of a novel aviadenovirus associated with disease in tawny frogmouths (Podargus strigoides). Virology, 588. 109904.

Anthony, Colin J., McDermott, Grace, Lock, Colin, Miller, Therese, Bentlage, Bastian, and Raymundo, Laurie J. (2023) Depth-independent phenotypic variation of massive Porites coral color morphs. Marine Ecology. (In Press)

Alvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2023) Disturbance-induced changes in population size structure promote coral biodiversity. American Naturalist, 202 (5). pp. 604-615.

Ahasan, Syed Ali, De Elías-Escribano, Alejandra, Artigas, Patricio, Alam, Mohammad Zahangir, Mondal, M. Motahar Hussain, Blair, David, Chowdhury, Emdadul Haque, Bargues, M. Dolores, and Mas-Coma, Santiago (2023) Wide variation of heterozygotic genotypes of recent fasciolid hybrids from livestock in Bangladesh assessed by rDNA internal transcribed spacer region sequencing and cloning. One Health, 17. 100614. (In Press)

Athukorala, Ajani, Helbig, Karla J., Mcsharry, Brian P., Forwood, Jade K., and Sarker, Subir (2022) Adenoviruses in Avian Hosts: Recent Discoveries Shed New Light on Adenovirus Diversity and Evolution. Viruses, 14 (8). 1767.

Armstrong, Eric J., Watson, Sue Ann, Stillman, Jonathon H., and Calosi, Piero (2022) Elevated temperature and carbon dioxide levels alter growth rates and shell composition in the fluted giant clam, Tridacna squamosa. Scientific Reports, 12. 11034.

Aguirre-Gutierrez, Jesus, Berenguer, Erika, Menor, Imma Oliveras, Bauman, David, Corral-Rivas, Jose Javier, Guadalupe Nava-Miranda, Maria, Both, Sabine, Ndong, Josue Edzang, Ondo, Fidele Evouna, Bengone, Natacha N'ssi, Mihinhou, Vianet, Dalling, James W., Heineman, Katherine, Figueiredo, Axa, Gonzalez-M, Roy, Norden, Natalia, Hurtado-M, Ana Belen, Gonzalez, Diego, Salgado-Negret, Beatriz, Reis, Simone Matias, Moraes de Seixas, Marina Maria, Farfan-Rios, William, Shenkin, Alexander, Riutta, Terhi, Girardin, Cécile A.J., Moore, Sam, Abernethy, Kate, Asner, Gregory P., Bentley, Lisa Patrick, Burslem, David F.R.P, Cernusak, Lucas A., Enquist, Brian J., Ewers, Robert M., Ferreira, Joice, Jeffery, Kathryn J., Joly, Carlos A., Marimon-Junior, Ben Hur, Martin, Roberta E., Morandi, Paulo S., Phillips, Oliver L., Bennett, Amy C., Lewis, Simon L., Quesada, Carlos A., Marimon, Beatriz Schwantes, Kissling, W. Daniel, Silman, Miles, Teh, Yit Arn, White, Lee J.T., Salinas, Norma, Coomes, David A., Barlow, Jos, Adu-Bredu, Stephen, and Malhi, Yadvinder (2022) Functional susceptibility of tropical forests to climate change. Nature Ecology & Evolution, 6. pp. 878-889.

Amos, Brogan A., Hoffmann, Ary A., Staunton, Kyran M., Lau, Meng-Jia, Burkot, Thomas R., and Ross, Perran A. (2022) Long-range but not short-range attraction of male Aedes aegypti (Diptera: Culicidae) mosquitoes to humans. Journal of Medical Entomology, 59 (1). pp. 83-88.

Amos, Brogan A., and Carde, Ring T. (2022) Verifying the efficiency of the Biogents Sentinel trap in the field and investigating microclimatic influences on responding Aedes aegypti behavior. Journal of Vector Ecology, 47 (2). pp. 166-170.

Antoun, Elie, Migliavacca, Eugenia, Garratt, Emma S., Barton, Sheila J., Titcombe, Phil, Westbury, Leo D., Baczynska, Alica, Dodds, Richards, Roberts, Helen C., Sayer, Avan A., Shaw, Sarah, Syddall, H.E., Sheppard, Allan, McFarlane, Craig, Karnani, Neerja, Forrester, Terrence, Cooper, Cyrus, Feige, Jerome N., Patel, Harnish P., Godfrey, Keith M., Lillycrop, Karen A., and EpiGen Global Research Consortium, (2021) Altered H19/miR‐675 expression in skeletal muscle is associated with low muscle mass in community‐dwelling older adults. JCSM Rapid Communications, 4 (2). pp. 207-221.

Alharbi, Adel B., Schmitz, Ulf, Bailey, Charles G., and Rasko, John E.J. (2021) CTCF as a regulator of alternative splicing: new tricks for an old player. Nucleic Acids Research, 49 (14). pp. 7825-7838.

Aguirre-Gutiérrez, Jesús, Rifai, Sami, Shenkin, Alexander, Oliveras, Imma, Bentley, Lisa Patrick, Svátek, Martin, Girardin, Cécile A.J., Both, Sabine, Riutta, Terhi, Berenguer, Erika, Kissling, W. Daniel, Bauman, David, Raab, Nicolas, Moore, Sam, Farfan-Rios, William, Figueiredo, Axa Emanuelle Simões, Reis, Simone Matias, Ndong, Josué Edzang, Ondo, Fidèle Evouna, N'ssi Bengone, Natacha, Mihindou, Vianet, Moraes de Seixas, Marina Maria, Adu-Bredu, Stephen, Abernethy, Katharine, Asner, Gregory P., Barlow, Jos, Burslem, David F.R.P., Coomes, David A., Cernusak, Lucas A., Dargie, Greta C., Enquist, Brian J., Ewers, Robert M., Ferreira, Joice, Jeffery, Kathryn J., Joly, Carlos A., Lewis, Simon L., Marimon-Junior, Ben Hur, Martin, Roberta E., Morandi, Paulo E., Phillips, Oliver L., Quesada, Carlos A., Salinas, Norma, Schwantes Marimon, Beatriz, Silman, Miles, Teh, Yit Arn, White, Lee J.T., and Malhi, Yadvinder (2021) Pantropical modelling of canopy functional traits using Sentinel-2 remote sensing data. Remote Sensing of Environment, 252. 112122.

Ashwood, Lauren M., Mitchell, Michela L., Madio, Bruno, Hurwood, David A., King, Glenn F., Undheim, Eivind A.B., Norton, Raymond S., and Prentis, Peter J. (2021) Tentacle morphological variation coincides with differential expression of toxins in sea anemones. Toxins, 13 (7). 452.

Alharbi, Adel B., Schmitz, Ulf, Marshall, Amy D., Vanichkina, Darya, Nagarajah, Rajini, Vellozzi, Melissa, Wong, Justin J.L., Bailey, Charles G., and Rasko, John E.J. (2020) Ctcf haploinsufficiency mediates intron retention in a tissue-specific manner. RNA Biology, 18 (1). pp. 93-103.

Athukorala, Ajani, Forwood, Jade K., Phalen, David N., and Sarker, Subir (2020) Molecular Characterisation of a Novel and Highly Divergent Passerine Adenovirus 1. Viruses, 12 (9). 1036.

Aird, Samantha Jayne (2020) Socio-ecological dynamics in mollusc fisheries: a case study from the Keppel Bay Islands, Great Barrier Reef, Australia. PhD thesis, James Cook University.

Allen, Andrew M., Ens, Bruno J., van de Pol, Martijn, Van Der Jeugd, Henk, Frauendorf, Magali, Van Der Kolk, Henk Jan, Oosterbeek, Kees, Nienhuis, Jeroen, and Jongejans, Eelke (2019) Colour-ring wear and loss effects in citizen science mark-resighting studies. Avian Research, 10 (1). 11.

Arnold, Sarah E.J., Forbes, Samantha J., Hall, David R., Farman, Dudley I., Bridgemohan, Puran, Spinelli, Gustavo R., Bray, Daniel P., Perry, Garvin B., Grey, Leroy, Belmain, Steven R., and Stevenson, Philip C. (2019) Floral odors and the interaction between pollinating Ceratopogonid midges and cacao. Journal of Chemical Ecology, 45. pp. 869-878.

Allen, Andrew, Ens, Bruno J., van de Pol, Martijn, Van Der Jeugd, Henk, Frauendorf, Magali, Oosterbeek, Kees, and Jongejans, Eelke (2019) Seasonal survival and migratory connectivity of the Eurasian Oystercatcher revealed by citizen science. Auk, 136 (1). pp. 1-17.

Amirkhah, Raheleh, Meshkin, Hojjat Naderi, Farazmand, Ali, Rasko, John E.J., and Schmitz, Ulf (2017) Computational and experimental identification of tissue-specific MicroRNA targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification: methods and protocols. Methods in Molecular Biology, 1580 . Humana Press Inc., New York, NY, USA, pp. 127-147.

Amirkhah, Raheleh, Farazmand, Ali, Gupta, Shailendra K., Ahmadi, Hamed, Wolkenhauer, Olaf, and Schmitz, Ulf (2015) Naïve Bayes classifier predicts functional microRNA target interactions in colorectal cancer. Molecular BioSystems, 11. pp. 2126-2134.

Adams, Nico, Hennig, Christian, Hoehndorf, Robert, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, and Hansen, Gesine (2010) The Ontology of Primary Immunodeficiency Diseases (PIDs): Using PIDs to Rethink the Ontology of Phenotypes. In: [Presented at the OBML 2010 Workshop]. IMISE-Report Ne 2/2010. From: OBML 2010: Ontologien in Biomedizin und Lebenswissenschaften, 9-10 September 2010, Mannheim, Germany.

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Bourne, David G., Sato, Yui, and Smith, Hillary A. (2024) Microbes guide corals looking to find a home. Trends in Microbiology, 32 (2). pp. 120-121.

Ballard, J. William O., Field, Matt A., Edwards, Richard J., Wilson, Laura A.B., Koungoulos, Loukas G., Rosen, Benjamin D., Chernoff, Barry, Dudchenko, Olga, Omer, Arina, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Chan, Eva, Zammit, Robert, Hayes, Vanessa, and Aiden, Erez Lieberman (2023) The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. GigaScience, 12. giad018.

Bertola, Lorenzo V., Higgie, Megan, Zenger, Kyall R., and Hoskin, Conrad J. (2023) Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog. Conservation Genetics, 24. pp. 249-264.

Borghi, Stefano, Clements, Matthew, Webb, Monique, Bostock, Helen, Webster, Jody M., McNeil, Mardi, Nothdurft, Luke, and Byrne, Maria (2023) Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53 (3). 39.

Brinkman, Diane L., Flores, Florita, Luter, Heidi M., Nordborg, F. Mikaela, Brooks, Maxime, Parkerton, Thomas F., and Negri, Andrew P. (2023) Sensitivity of the Indo-Pacific coral Acropora millepora to aromatic hydrocarbons. Environmental Pollution, 332. 121963.

Blair, David, Cannon, Lester R.G., Littlewood, David, Olson, Peter D., and Sewell, Kim B. (2023) The Temnocephalidae (Platyhelminthes): molecular data illuminate the evolution of an ancient group of symbiotic flatworms. Systematics and Biodiversity, 21 (1). 2174611.

Binks, Oliver, Cernusak, Lucas A., Liddell, Michael, Bradford, Matt, Coughlin, Ingrid, Bryant, Callum, Palma, Ana C., Hoffmann, Luke, Alam, Iftakharul, Carle, Hannah J., Rowland, Lucy, Oliveira, Rafael S., Laurance, Susan G.W., Mencuccini, Maurizio, and Meir, Patrick (2023) Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply. New Phytologist. (In Press)

Bougher, Neale L., and Barrett, Matthew D. (2023) Volvopluteus earlei and Volvariella taylorii: new fungi for Western Australia (Basidiomycota: Agaricales: Pluteaceae). Nuytsia, 34. pp. 187-201.

Bertola, Lorenzo V., Hoskin, Conrad J., Jones, David B., Zenger, Kyall R., McKnight, Donald T., and Higgie, Megan (2023) The first linkage map for Australo-Papuan Treefrogs (family: Pelodryadidae) reveals the sex-determination system of the Green-eyed Treefrog (Litoria serrata). Heredity, 131. pp. 263-272.

Bowden, Casey L., Streit, Robert P., Bellwood, David R., and Tebbett, Sterling B. (2022) A 3D perspective on sediment turnover and feeding selectivity in blennies. Marine Pollution Bulletin, 180. 113799.

Brucato, Nicolas, André, Mathilde, Hudjashov, Georgi, Mondal, Mayukh, Cox, Murray P., Leavesley, Matthew, and Ricaut, François Xavier (2022) Chronology of natural selection in Oceanian genomes. iScience, 25 (7). 104583.

Benestan, Laura, Loiseau, Nicolas, Guerin, Pierre-Edouard, Perez-Ruzafa, Angel, Forcada, Aitor, Arcas, Esther, Lenfant, Philippe, Mallol, Sandra, Goni, Raquel, Velez, Laure, Mouillot, David, Puebla, Oscar, and Manel, Stephanie (2022) Contrasting influence of seascape, space and marine reserves on genomic variation in multiple species. Ecography, 2023 (1). e06127.

Barrett, Russell L., and Barrett, Matthew D. (2022) Dianella lignosa (Asphodelaceae), a new species from the north-west Kimberley region of Western Australia. Telopea, 25. pp. 197-202.

Binks, Oliver, Cernusak, Lucas A., Liddell, Michael, Bradford, Matt, Coughlin, Ingrid, Carle, Hannah, Bryant, Callum, Dunn, Elliot, Oliveira, Rafael, Mencuccini, Maurizio, and Meir, Patrick (2022) Forest system hydraulic conductance: partitioning tree and soil components. New Phytologist, 233 (4). pp. 1667-1681.

Bloesch, Zoë, Nauheimer, Lars, Almeida, Thais Elias, Crayn, Darren, and Field, Ashley Raymond (2022) HybPhaser identifies hybrid evolution in Australian Thelypteridaceae. Molecular Phylogenetics and Evolution, 173. 107526.

Blair, David (2022) Lung flukes of the genus Paragonimus: ancient and re-emerging pathogens. Parasitology, 149 (10). pp. 1286-1295.

Bernal, Moisés A., Schmidt, Elliott, Donelson, Jennifer M., Munday, Philip L., and Ravasi, Timothy (2022) Molecular Response of the Brain to Cross-Generational Warming in a Coral Reef Fish. Frontiers in Marine Science, 9. 784418. pp. 1-16.

Bauman, David, Fortunel, Claire, Cernusak, Lucas A., Bentley, Lisa P., McMahon, Sean M., Rifai, Sami W., Aguirre-Gutiérrez, Jesús, Oliveras, Imma, Bradford, Matt, Laurance, Susan G.W., Delhaye, Guillaume, Hutchinson, Michael F., Dempsey, Raymond, McNellis, Brandon E., Santos-Andrade, Paul E., Ninantay-Rivera, Hugo R., Chambi Paucar, Jimmy R., Phillips, Oliver L., and Malhi, Yadvinder (2022) Tropical tree growth sensitivity to climate is driven by species intrinsic growth rate and leaf traits. Global Change Biology, 28 (4). pp. 1414-1432.

Bauman, David, Fortunel, Claire, Delhaye, Guillaume, Malhi, Yadvinder, Cernusak, Lucas A., Bentley, Lisa Patrick, Rifai, Sami W., Aguirre-Gutierrez, Jesus, Menor, Imma Oliveras, Phillips, Oliver L., McNellis, Brandon E., Bradford, Matt, Laurance, Susan G.W., Hutchinson, Michael F., Dempsey, Raymond, Santos-Andrade, Paul E., Ninantay-Rivera, Hugo R., Chambi Paucar, Jimmy R., and McMahon, Sean M. (2022) Tropical tree mortality has increased with rising atmospheric water stress. Nature, 608. pp. 528-533.

Barrett, Russell L., Barrett, Matthew D., and Clements, Mark A. (2022) A revision of Orchidaceae from the Kimberley region of Western Australia with new species of tropical Calochilus and Dipodium. Telopea, 25. pp. 203-270.

Barton, Jonathan A., Neil, Rachel C., Humphrey, Craig, Bourne, David G., and Hutson, Kate S. (2021) Efficacy of chemical treatments for Acropora-eating flatworm infestations. Aquaculture, 532. 735978.

Bidmos, M.A., Adebesin, A.A., Mazengenya, P., Olateju, O.I., and Adegboye, Oyelola (2021) Estimation of sex from metatarsals using discriminant function and logistic regression analyses. Australian Journal of Forensic Sciences, 53 (5). pp. 543-556.

Benettin, Paolo, Nehemy, Magali F., Cernusak, Lucas A., Kahmen, Ansgar, and McDonnell, Jeffrey J. (2021) On the use of leaf water to determine plant water source: a proof of concept. Hydrological Processes, 35 (3). e14073.

Bailey, Charles G., Gupta, Shailendra, Metierre, Cynthia, Amarasekera, Punkaja M.S., O'Young, Patrick, Kyaw, Wunna, Laletin, Tatyana, Francis, Habib, Semaan, Crystal, Sharifi Tabar, Mehdi, Singh, Krishna P., Mullighan, Charles G., Wolkenhauer, Olaf, Schmitz, Ulf, and Rasko, John (2021) Structure–function relationships explain CTCF zinc finger mutation phenotypes in cancer. Cellular and Molecular Life Sciences, 78. pp. 7519-7536.

Buitrago, Geraldine, Pickering, Darren, Ruscher, Roland, Cobos Caceres, Claudia, Jones, Linda, Cooper, Martha, Van Waardenberg, Ashley, Ryan, Stephanie, Miles, Kim, Field, Matthew, Dredge, Keith, Daly, Norelle L., Giacomin, Paul R., and Loukas, Alex (2021) A netrin domain-containing protein secreted by the human hookworm Necator americanus protects against CD4 T cell transfer colitis. Translational Research, 232. pp. 88-102.

Branconi, Rebecca, Barbasch, Tina A., Francis, Robin K., Srinivasan, Maya, Jones, Geoffrey P., and Buston, Peter M. (2020) Ecological and social constraints combine to promote evolution of non-breeding strategies in clownfish. Communications Biology, 3. 649.

Bouyoucos, Ian Alexander (2020) Ecological energetics of climate change for tropical sharks. PhD thesis, James Cook University.

Brouwer, Lyanne, and Cockburn, Andrew (2020) Experimental vacancies do not induce settlement despite habitat saturation in a cooperative breeder. Biology Letters, 16 (3). 20190757.

Bougher, Neale L., and Barrett, Matthew D. (2020) Fungi and slime moulds recorded in surveys at Kings Park and Bold Park – urban bushlands Perth, Western Australia. Western Australian Naturalist, 31 (4). pp. 191-251.

Brouwer, Lyanne, Cockburn, Andrew, and van de Pol, Martijn (2020) Integrating fitness components reveals that survival costs outweigh other benefits and costs of group living in two closely related species. American Naturalist, 195 (2). pp. 201-215.

Buitrago, Geraldine (2020) The anti-colitic properties of hookworm protein Na-AIP-1. PhD thesis, James Cook University.

Brouwer, Lyanne, and Griffith, Simon C. (2019) Extra-pair paternity in birds. Molecular Ecology, 28 (22). pp. 4864-4882.

Burguete, Alondra Schweizer, Francis, Deanne, Rosa, Jeffrey, and Ghabrial, Amin (2019) The regulation of cell size and branch complexity in the terminal cells of the Drosophila tracheal system. Developmental Biology, 451. pp. 79-85.

Bellwood, David R., Schultz, Ortwin, Siqueira Correa, Alexandre C., and Cowman, Peter F. (2019) A review of the fossil record of the Labridae. Annalen des Naturhistorischen Museums in Wien, Serie A, 121. pp. 125-193.

Banowary, Banya, Dang, Van Tuan, Sarker, Subir, Connolly, Joanne H., Chenu, Jeremy, Groves, Peter, Raidal, Shane, and Ghorashi, Seyed Ali (2018) Evaluation of Two Multiplex PCR–High-Resolution Melt Curve Analysis Methods for Differentiation of Campylobacter jejuni and Campylobacter coli Intraspecies. Avian Diseases, 62 (1). pp. 86-93.

Brouwer, Lyanne, van de Pol, Martijn, Aranzamendi, Nataly Hidalgo, Bain, Glen, Baldassarre, Daniel T., Brooker, Lesley C., Brooker, Michael G., Colombelli-Négrel, Diane, Enbody, Erik, Gielow, Kurt, Hall, Michelle L., Johnson, Allison E., Karubian, Jordan, Kingma, Sjouke A., Kleindorfer, Sonia, Louter, Marina, Mulder, Raoul A., Peters, Anne, Pruett-Jones, Stephen, Tarvin, Keith A., Thrasher, Derrick J., Varian-Ramos, Claire W., Webster, Michael S., and Cockburn, Andrew (2017) Multiple hypotheses explain variation in extra-pair paternity at different levels in a single bird family. Molecular Ecology, 26 (23). pp. 6717-6729.

Brouwer, Lyanne, van de Pol, Martijn, and Cockburn, Andrew (2014) Habitat geometry does not affect levels of extrapair paternity in an extremely unfaithful fairy-wren. Behavioral Ecology, 25 (3). pp. 531-537.

Brouwer, Lyanne, van de Pol, Martijn, and Cockburn, Andrew (2014) The role of social environment on parental care: offspring benefit more from the presence of female than male helpers. Journal of Animal Ecology, 83. pp. 491-503.

Brouwer, Lyanne, van de Pol, Martijn, Atema, Els, and Cockburn, Andrew (2011) Strategic promiscuity helps avoid inbreeding at multiple levels in a cooperative breeder where both sexes are philopatric. Molecular Ecology, 20 (22). pp. 4796-4807.

Brouwer, Lyanne, Barr, Iain, van de Pol, Martijn, Burke, Terry, Komdeur, Jan, and Richardson, David S. (2010) MHC-dependent survival in a wild population: evidence for hidden genetic benefits gained through extra-pair fertilizations. Molecular Ecology, 19 (16). pp. 3444-3455.

Bruinzeel, Leo W., van de Pol, Martijn, and Trierweiler, Christiane (2006) Competitive abilities of oystercatchers (Haematopus ostralegus) occupying territories of different quality. Journal of Ornithology, 147. pp. 457-463.

Bruinzeel, Leo W., and van de Pol, Martijn (2004) Site attachment of floaters predicts success in territory acquisition. Behavioral Ecology, 15 (2). pp. 290-296.

Bruinzeel, Leo, and van de Pol, Martijn (2003) Population decline of Oystercatchers on Schiermonnikoog. Limosa, 76 (1). 25 - 26.

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Cooper, W.E., Crayn, D.M., and Joyce, E.M. (2023) Aglaia fellii W.E.Cooper & Joyce (Meliaceae), a new species for Cape York Peninsula. Australian Journal of Taxonomy, 23.

Chen, Xuelei, Xu, Tian, Dowse, Harold B., Tao, Yi, Zeng, Chaoshu, Zhao, Fanyi, Ye, Haihui, and Guo, Donghui (2023) Correlation between transport and moulting of catadromous crab megalopae: The effects of starvation on rhythmic vertical migration. Marine and Freshwater Behaviour and Physiology, 56 (1-2). pp. 1-18.

Cui, Meng Meng, Moynier, Frédéric, Su, Ben Xun, Dai, Wei, Mahan, Brandon, and Le Borgne, Marie (2023) Distinctive calcium isotopic composition of mice organs and fluids: implications for biological research. Analytical and Bioanalytical Chemistry, 415. pp. 6839-6850.

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de la Fuente Pinero, Alejandro, and Williams, Stephen E. (2023) Climate change threatens the future of rain forest ringtail possums by 2050. Diversity and Distributions, 29 (1). pp. 173-183.

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Dowe, John Leslie (2023) Ferdinand Mueller in Western Australia in 1877, with notes on his later contributions to the Western Australian flora. Nuytsia, 34. pp. 157-178.

Davison, E.M., Giustiniano, D., Barrett, M.D., and Syme, K. (2023) Four new species of Amanita sect. Roanokenses (Basidiomycota) from Western Australia. Nuytsia, 34. pp. 65-92.

Doll, Peter C., Uthicke, Sven, Caballes, Ciemon F., Patel, Frances, Gomez Cabrera, Maria del C., Lang, Bethan J., and Pratchett, Morgan S. (2023) Induction of larval settlement in crown-of-thorns starfish is not mediated by conspecific cues. Scientific Reports, 13. 17119.

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Downie, Adam T., Lefevre, Sjannie, Illing, Björn, Harris, Jessica, Jarrold, Michael D., McCormick, Mark I., Nilsson, Göran E., and Rummer, Jodie L. (2023) Rapid physiological and transcriptomic changes associated with oxygen delivery in larval anemonefish suggest a role in adaptation to life on hypoxic coral reefs. PLoS Biology, 21 (5). e3002102.

Dorney, Ryley, Dhungel, Bijay P., Rasko, John E.J., Hebbard, Lionel, and Schmitz, Ulf (2023) Recent Advances in Cancer Fusion Transcript Detection. Briefings in Bioinformatics, 24 (1). bbac519.

Dowe, John, Venter, Fanie, UNSPECIFIED, and UNSPECIFIED (2023) Saribus pendulinus, a New Fan-Palm from New Guinea. Palms, 67 (1). pp. 13-25.

Doll, Peter C., Uthicke, Sven, Caballes, Ciemon F., Diaz-Pulido, Guillermo, Abdul Wahab, Muhammad A., Jeong, So Young, Lang, Bethan J., and Pratchett, Morgan S. (2023) Settlement cue selectivity by larvae of the destructive crown-of-thorns starfish. Biology Letters, 19 (1). 20220399.

Deng, Zhixiong, Yao, Yiyang, Blair, David, Hu, Wei, and Yin, Mingbo (2022) Ceriodaphnia (Cladocera: Daphniidae) in China: Lineage diversity, phylogeography and possible interspecific hybridization. Molecular Phylogenetics and Evolution, 175. 107586.

Deng, Zhixiong, Yang, Wenwu, Blair, David, Hu, Wei, and Yin, Mingbo (2022) Diversity of Brachionus plicatilis species complex (Rotifera) in inland saline waters from China: Presence of a new mitochondrial clade on the Tibetan Plateau. Molecular Phylogenetics and Evolution, 171. 107457.

Davis, Norman E., Blair, David, and Brant, Sara V. (2022) Diversity of Trichobilharzia in New Zealand with a new species and a redescription, and their likely contribution to cercarial dermatitis. Parasitology, 149 (3). pp. 380-395.

Dalling, James, Cernusak, Lucas, Chen, Yu-yen, Slot, Martijn, Sarmiento, Carolina, and Zalamea, Paul-Camilo (2022) Effect of climate change on regeneration of plants from seeds in tropical wet forests. In: Baskin, Carol C., and Baskin, Jerry M., (eds.) Plant Regeneration from Seeds: A Global Warming Perspective. Academic Press, London, UK, pp. 157-168.

Doll, Peter C., Caballes, Ciemon F., Hoey, Andrew S., Uthicke, Sven, Ling, Scott D., and Pratchett, Morgan S. (2022) Larval settlement in echinoderms: a review of processes and patterns. Oceanography and Marine Biology, 60. pp. 433-494.

Dowe, John, and Hilje Quirós, Luko (2022) Las exploraciones botánicas de Hermann Wendland en Centroamérica (1856-1857) I. De Guatemala al Valle Central de Costa Rica / Hermann Wendland’s Botanical Explorations in Central America (1856-1857) I. From Guatemala to the Central Valley in Costa Rica. Revista Comunicación, 31 (43). pp. 61-93.

Dowe, John Leslie, and Schweizer, Ernest (2022) Livistona victoriae and the North Australian Exploring Expedition 1855–1856. Palms, 66 (2). pp. 90-102.

Dekkers, Aart M., Dekker, Henk, and Maxwell, Stephen J. (2022) Studies in Canarium urceus (Linnaeus, 1758) Part 6: A new Canarium species from the Andaman Sea (Gastropoda: Strombidae) and discussion on related species. The Festivus, 54 (1). pp. 29-35.

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Dowe, John Leslie, and Yoxall, Helen (2022) William August Schipp (1891–1967): Commemorated in Schippia concolor and Chamaedorea schippii. Palms, 66 (3). pp. 109-125.

Dowe, John L., Appelhans, Marc S., Bräuchler, Christian, Hilje, Luko, and Schlumpberger, Boris O. (2022) The botanical expedition of Hermann Wendland in Central America: a nomenclatural study and travel report. Boissiera, 73. pp. 1-136.

Dowe, John Leslie, and Schlumpberger, Boris O. (2022) The uncertain history of an early illustration of Chamaedorea ernesti-augusti. Palms, 66 (1). pp. 33-40.

Doll, Peter C., Messmer, Vanessa, Uthicke, Sven, Doyle, Jason R., Caballes, Ciemon F., and Pratchett, Morgan S. (2021) DNA-based detection and patterns of larval settlement of the corallivorous crown-of-thorns sea star (Acanthaster sp.). Biological Bulletin, 241 (3). pp. 271-285.

Deng, Zhixiong, Ni, Yijun, Wang, Jinhui, Ebido, Chike Chukwuenyem, Odii, Elijah Chibueze, Okoro, Joseph Onyekwere, Blair, David, Hu, Wei, and Yin, Mingbo (2021) Cryptic diversity and gene introgression of Moinidae (Crustacea: Cladocera) in Nigeria. Contributions to Zoology, 90. pp. 463-486.

Downie, Adam Tyler (2021) How do coral reef fishes develop into athletes? PhD thesis, James Cook University.

Dinh, Xuyen T., Stanley, Dragana, Smith, Letitia D., Moreau, Morgane, Berzins, Stuart P., Gemiarto, Adrian, Baxter, Alan G., and Jordan, Margaret A. (2021) Modulation of TCR signalling components occurs prior to positive selection and lineage commitment in iNKT cells. Scientific Reports, 11. 23650.

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Deacy, Anthony M., Gan, Samuel Ken-En, and Derrick, Jeremy P. (2021) Superantigen recognition and interactions: functions, mechanisms and applications. Frontiers in Immunology, 12. 731845. pp. 3765-6781.

Dowe, John Leslie, and Hodel, Donald Robert (2021) Taxonomy and nomenclature of four unresolved names published by Udo Dammer in the genus Chamaedorea (Arecaceae). Candollea, 76 (1). pp. 93-98.

Drane, Kezia, Huerlimann, Roger, Power, Michelle, Whelan, Anna, Ariel, Ellen, Sheehan, Madoc, and Kinobe, Robert (2021) Testudines as sentinels for monitoring the dissemination of antibiotic resistance in marine environments: an integrative review. Antibiotics, 10 (7). 775.

Dowe, John (2021) Udo Dammer (1860-1920): a palm specialist at Berlin Botanical Garden. Palms, 65 (2). pp. 67-79.

Dhungel, Bijay P., Monteuuis, Geoffray, Giardina, Caroline, Tabar, Mehdi S., Feng, Yue, Metierre, Cynthia, Ho, Sarah, Nagarajah, Rajini, Fontaine, Angela R.M., Shah, Jaynish S., Gokal, Divya, Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2021) The fusion of CLEC12A and MIR223HG arises from a trans‐splicing event in normal and transformed human cells. International Journal of Molecular Sciences, 22. 12178.

Downie, Adam T., Leis, Jeffrey M., Cowman, Peter F., McCormick, Mark I., and Rummer, Jodie L. (2021) The influence of habitat association on swimming performance in marine teleost fish larvae. Fish and Fisheries, 22 (6). pp. 1187-1212.

Dowe, John Leslie (2020) The Australian paintings of Marianne North, 1880–1881: landscapes ‘doomed shortly to disappear’. Cunninghamia, 20.

Du, Qingdan, Huang, Yen-hua, Bajpai, Abhishek, Frosig- Jorgensen, Majbrit, Zhao, Guangzu, and Craik, David J. (2020) Evaluation of the in vivo aphrodisiac activity of a cyclotide extract from Hybanthus enneaspermus. Journal of Natural Products, 83 (12). pp. 3736-3743.

Dowe, John, Maroske, Sara, and May, Tom (2020) Flowers and fungi: illustrations by Ferdinand von Mueller’s nieces. Australian Garden History, 32. pp. 12-15.

Dowe, John, and Maroske, Sara (2020) John Dallachy (1804–71): collecting botanical specimens at Rockingham Bay. Historical Records of Australian Science, 31 (2). pp. 101-117.

Dowe, John, and Maroske, Sara (2020) John Dallachy (1804–71): from gardener to botanical collector. Historical Records of Australian Science, 31 (2). pp. 87-100.

Dowe, John Leslie, and Latifah, Dian (2020) Oranges or kings? The cryptic etymology of Zippelius’s Orania regalis. Palms, 64 (3). pp. 121-130.

Das, Shubhagata, Smith, Kate, Sarker, Subir, Peters, Andrew, Adriaanse, Katherine, Eden, Paul, Ghorashi, Seyed A., Forwood, Jade K., and Raidal, Shane R. (2020) Repeat spillover of beak and feather disease virus into an endangered parrot highlights the risk associated with endemic pathogen loss in endangered species. Journal of Wildlife Diseases, 56 (4). pp. 896-906.

Dowe, John, May, Tom W., Maroske, Sara, and Smith, Lucy T. (2020) The Wehl family of South Australia and their botanical connections with “Dear Uncle” Baron Ferdinand von Mueller. Swainsona, 34. pp. 1-79.

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Dowe, John Leslie, and Schlumpberger, Boris O. (2019) The Australian cabbage palm at Herrenhausen Gardens. Australian Garden History, 30. pp. 16-19.

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Maxwell, Stephen, and Rymer, Tasmin (2021) Are the ICZN and PhyloCode that incompatible? A summary of the shifts in Stromboidean taxonomy and the definition of two new subfamilies in Stromboidae (Mollusca, Neostromboidae). The Festivus, 53 (1). pp. 44-51.

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Maxwell, Stephen (2021) Recognising and defining new crown clades in Stromboidea Rafinesque, 1815 (Mollusca: Gastropoda) / Выявление и определение новых краун-групп в Stromboidea Rafinesque, 1815 (Mollusca: Gastropoda). Bulletin of the Russian Far East Malacological Society, 25 (1/2). pp. 9-16.

Maxwell, Stephen (2021) Registration of Neostromboidae Clades in the RegNum of the PhyloCode, and Errata. The Festivus, 53 (3). pp. 192-209.

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Maxwell, Stephen, and Dekkers, Aart (2021) Studies in Canarium urceus (Linné, 1758) Part 4: Canarium (Canarium) orrae (Abbott, 1960) (Gastropoda: Neostromboidae: Strombidae) and a new species from the Northern Territory, Australia. The Festivus, 53 (4). pp. 270-281.

Maxwell, Stephen, and Dekkers, Aart (2021) Studies in Canarium urceus (Linné, 1758) Part 5: a New Species from the Northern Pacific Ocean (Gastropoda: Neostromboidae: Strombidae). The Festivus, 53 (4). pp. 282-287.

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Maxwell, Stephen J., Hernandez Duran, Linda C., Rowell, Misha K., and Rymer, Tasmin L. (2021) An iconography of extant Gibberulus Jousseaume, 1888 (Mollusca, Gastropoda, Strombidae), and the introduction of a new species from the southwestern Pacific. Proceedings of the Biological Society of Washington, 134 (1). pp. 89-115.

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Paris, Damien Boyd Bertrand Paul, Riddell, Pia, Joone, Carolynne, de la Rey, Morné, Ganswindt, Andre, and Paris, Monique (2024) Cold dogs: Sperm freezing, artificial insemination & non-invasive monitoring tools to facilitate a hybrid conservation management approach for endangered African wild dogs. Theriogenology Wild, 4. 100073.

Pell, T.J., McClure, E.C., Emslie, M.J., and Hoey, A.S. (2024) Limited susceptibility of Lobophora to browsing fishes on inshore reefs of the Great Barrier Reef. Coral Reefs, 43. pp. 5-17.

Pei, Yingbing, Deng, Zhixiong, Zhang, Xiuping, Blair, David, Hu, Wei, and Yin, Mingbo (2023) Chromosome-scale genome assembly of the freshwater cladoceran crustacean Chydorus sphaericus: A resource for discovery of genes responsive to ecological challenges. Aquatic Toxicology, 260. 106565.

Pedro, Nicole, Brucato, Nicolas, Cavadas, Bruno, Lisant, Valentine, Camacho, Rui, Kinipi, Christopher, Leavesley, Matthew, Pereira, Luisa, and Ricaut, François-Xavier (2023) First insight into oral microbiome diversity in Papua New Guineans reveals a specific regional signature. Molecular Ecology, 32 (10). pp. 2551-2564.

Postaire, Bautisse D., Devloo-Delva, Floriaan, Brunnschweiler, Juerg M., Charvet, Patricia, Chen, Xiao, Cliff, Geremy, Daly, Ryan, Drymon, J. Marcus, Espinoza, Mario, Fernando, Daniel, Glaus, Kerstin, Grant, Michael I., Hernández, Sebastián, Hyodo, Susumu, Jabado, Rima W., Jaquemet, Sébastien, Johnson, Grant, Naylor, Gavin J.P., Nevill, John E.G., Pathirana, Buddhi M., Pillans, Richard D., Smoothey, Amy F.., Tachihara, Katsunori, Tillet, Bree J., Valerio-Vargas, Jorge A., Lesturgie, Pierre, Magalon, Hélène, Feutry, Pierre, and Mona, Stefano (2023) Global genetic diversity and historical demography of the Bull Shark. Journal of Biogegoraphy. (In Press)

Piontek, Melissa, Andreosso, Athena, and Smout, Michael (2023) Rapid and permanent cytotoxic effects of venom from Chiropsella bronzie and Malo maxima on human skeletal and cardiac muscle cells. Toxicon, 233. 107250.

Panero, Marta, Galbraith, G.F., Srinivasan, M., and Jones, G.P. (2023) Roles of depth, current speed, and benthic cover in shaping gorgonian assemblages at the Palm Islands (Great Barrier Reef). Coral Reefs. (In Press)

Premarathna, Amal D., Tuvikene, Rando, Somasiri, M.N.R., De Silva, M.L.W.P., Adhikari, Ranjith, Ranahewa, T.H., Wijesundara, R.R.M.K.K., Wijesekera, S.K., Wangchuk, Phurpa, Rjabovs, Vitalijs, Jayasooriya, Anura P., and Rajapakse, R.P.V.J. (2023) A novel therapeutic effect of mannitol-rich extract from the brown seaweed Sargassum ilicifolium using in vitro and in vivo models. BMC Complementary Medicine and Therapies, 23. 26.

Pedersen, Lucille T., and Domett, Kate (2022) Adult age at death estimation: methods tested on Thai postcranial skeletal remains. Anthropological Science, 130 (2). pp. 147-159.

Poon, Zhi Weng Josiah, Shen, Xueyan, Angelo, Joseph, Terence, Celestine, Chua, Shi Wei Gavin, and Domingos, Jose A. (2022) Comparative transcriptome analysis reveals factors involved in the influence of dietary astaxanthin on body colouration of Malabar Snapper (Lutjanus malabaricus). Aquaculture, 562. 738874.

Paredes, Gabriela F., Viehboeck, Tobias, Markert, Stephanie, Mausz, Michaela A., Sato, Yui, Liebeke, Manuel, König, Lena, and Bulgheresi, Silvia (2022) Differential regulation of degradation and immune pathways underlies adaptation of the ectosymbiotic nematode Laxus oneistus to oxic-anoxic interfaces. Scientific Reports, 12. 9725.

Pot, Morrison T., and Brouwer, Lyanne (2022) Facultative and persistent offspring sex-ratio bias in relation to the social environment in cooperatively breeding red-winged fairy-wrens (Malurus elegans). Behavioral Ecology and Sociobiology, 76 (8). 113.

Petrova, Veronika, Song, Renhua, DEEP Consortium, , Nordström, Karl J.V., Walter, Jörn, Wong, Justin J.-L., Armstrong, Nicola J., Rasko, John E.J., and Schmitz, Ulf (2022) Increased chromatin accessibility facilitates intron retention in specific cell differentiation states. Nucleic Acids Research, 50 (20). gkac994. pp. 11563-11579.

Perez, Michelle A., Limpus, Colin J., Hofmeister, Kate, Shimada, Takahiro, Strydom, Aub, Webster, Emily, and Hamann, Mark (2022) Satellite tagging and flipper tag recoveries reveal migration patterns and foraging distribution of loggerhead sea turtles (Caretta caretta) from eastern Australia. Marine Biology, 169. 80.

Pattiselanno, Freddy, Iriansul, , Barnes, Paul A., and Arobaya, Agustina Y.S. (2022) Using local ecological knowledge to locate the western long-beaked echidna Zaglossus bruijnii on the Vogelkop Peninsula, West Papua, Indonesia. Oryx, 56 (4). pp. 636-638.

Poorter, Hendrik, Knopf, Oliver, Wright, Ian J., Temme, Andries A., Hogewoning, Sander W., Graf, Alexander, Cernusak, Lucas A., and Pons, Thijs L. (2022) A meta-analysis of responses of C3 plants to atmospheric CO2: dose–response curves for 85 traits ranging from the molecular to the whole-plant level. New Phytologist, 233 (4). pp. 1560-1596.

Peres, Newton G., Wang, Nancy, Whitney, Paul, Engel, Sven, Shreenivas, Meghanashree M., Comerford, Ian, Hocking, Dianna M., Erazo, Anna B., Forster, Irmgard, Kupz, Andreas, Gebhardt, Thomas, McColl, Shaun R., McSorley, Stephen J., Bedoui, Sammy, and Strugnell, Richard A. (2021) CD4+ T cell immunity to Salmonella is transient in the circulation. PLoS Pathogens, 17 (10). e1010004.

Phie, J., Krishna, S.M., Kinobe, R., Moxon, J.V., Andrade-Lima, A., Morton, S.K., Lazzaroni, S.M., Huynh, P., and Golledge, J. (2021) Effects of quercetin on exercise performance, physical activity and blood supply in a novel model of sustained hind-limb ischaemia. BJS Open, 5 (1). zraa059.

Peng, Yunke, Bloomfield, Keith J., Cernusak, Lucas A., Domingues, Tomas F., and Prentice, I. Colin (2021) Global climate and nutrient controls of photosynthetic capacity. Communications Biology, 4 (1). 462.

Pérez-Escobar, Oscar Alejandro, Dodsworth, Steven, Bogarin, Diego, Bellot, Sidonie, Balbuena, Juan A., Schley, Rowan J., Kikuchi, Izai, Morris, Sarah K., Epitawalage, Niroshini, Cowan, Robyn, Maurin, Olivier, Zuntini, Alexandre, Arias, Tatiana, Serna-Sanchez, Alejandra, Gravendeel, Barbara, Torres-Jimenez, Maria Fernanda, Nargar, Katharina, Chomicki, Guillaume, Chase, Mark W., Lietch, Ilia J., Forest, Felix, and Baker, William J. (2021) Hundreds of nuclear and plastid loci yield novel insights into orchid relationships. American Journal of Botany, 108 (7). pp. 1166-1180.

Peters, Jennifer M.R., López, Rosana, Nolf, Markus, Hutley, Lindsay B., Wardlaw, Tim, Cernusak, Lucas A., and Choat, Brendan (2021) Living on the edge: a continental-scale assessment of forest vulnerability to drought. Global Change Biology, 27 (15). pp. 3620-3641.

Pivovaroff, Alexandria L., McDowell, Nate G., Rodrigues, Tayana Barrozo, Brodribb, Tim, Cernusak, Lucas A., Choat, Brendan, Grossiord, Charlotte, Ishida, Yoko, Jardine, Kolby J., Laurance, Susan, Leff, Riley, Li, Weibin, Liddell, Michael, Mackay, D. Scott, Pacheco, Heather, Peters, Jennifer, de J. Sampaio Filho, Israel, Souza, Daisy C., Wang, Wenzhi, Zhang, Peipei, and Chambers, Jeff (2021) Stability of tropical forest tree carbon-water relations in a rainfall exclusion treatment through shifts in effective water uptake depth. Global Change Biology, 27. pp. 6454-6466.

Phie, James, Thanigaimani, Shivshankar, and Golledge, Jonathan (2021) Systematic review and meta-analysis of interventions to slow progression of abdominal aortic aneurysm in mouse models. Arteriosclerosis, Thrombosis and Vascular Biology, 41 (4). pp. 1504-1517.

Pie, Marcio R., Divieso, Raquel, Caron, Fernanda S., Siqueira Correa, Alexandre C., Barneche, Diego R., and Luiz, Osmar J. (2021) The evolution of latitudinal ranges in reef-associated fishes: heritability, limits and inverse Rapoport's rule. Journal of Biogeography, 48 (9). pp. 2121-2132.

Pisapia, Chiara, Edmunds, Peter J., Moeller, Holly V., Riegel, Bernhard, McWilliam, Mike, Wells, Christopher D., and Pratchett, Morgan S. (2020) Projected shifts in coral size structure in the Anthropocene. Advances in Marine Biology, 87 (1). pp. 31-60.

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Quin, Matthew J., Morgan, John W., and Murphy, Nicholas P. (2023) Assessing the diet and seed dispersal ability of non-native sambar deer (Rusa unicolor) in native ecosystems of south-eastern Australia. Ecology and Evolution, 13 (11). e10711.

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Reinhold, Linda M., Wilson, David T., and Rymer, Tasmin L. (2024) Does the photoluminescence of rat fur influence interactions in the field? Australian Journal of Zoology, 71 (2). ZO23021.

Ritter, Carmen J., and Bourne, David G. (2024) Marine amphipods as integral members of global ocean ecosystems. Journal of Experimental Marine Biology and Ecology, 572. 151985.

Rowell, Misha K., and Rymer, Tasmin L. (2023) Both age and experience are important for successful problem solving in juvenile fawn-footed mosaic-tailed rats Melomys cervinipes. Animal Cognition, 26. pp. 781-789.

Rowland, Jesse, Hoskin, Conrad J., and Burnett, Scott (2023) Camera-trapping density estimates suggest critically low population sizes for the Wet Tropics subspecies of the spotted-tailed quoll (Dasyurus maculatus gracilis). Austral Ecology, 48 (2). pp. 399-417.

Ritmejeryte, Edita, Boughton, Berin A., Bayly, Michael J., and Miller, Rebecca E. (2023) Diverse organ-specific localisation of a chemical defence, cyanogenic glycosides, in flowers of eleven species of Proteaceae. PLoS ONE, 18 (4). e0285007.

Reinhold, Linda M. (2023) Loss of photoluminescence in wet-preserved rat and bandicoot specimens. Australian Zoologist, 43 (2). pp. 232-243.

Ramírez-Calero, S., Paula, J.R., Otjacques, E., Ravasi, T., Rosa, R., and Schunter, C. (2023) Neuromolecular responses in disrupted mutualistic cleaning interactions under future environmental conditions. BMC Biology, 21 (1). 258.

Reinhold, Linda M. (2023) Photobleaching of pink photoluminescence in bandicoot fur. Australian Zoologist, 43 (2). pp. 244-254.

Reinhold, Linda Melissa (2023) Photoluminescence in fur. Masters (Research) thesis, James Cook University.

Reinhold, Linda M., Rymer, Tasmin L., Helgen, Kristofer M., and Wilson, David T. (2023) Photoluminescence in mammal fur: 111 years of research. Journal of Mammalogy, 104 (4). pp. 892-906.

Rugolo, Maximiliano, Barroetaveña, Carolina, Barrett, Matt D., Mata, Gerardo, Hood, Ian A., Rajchenberg, Mario, and Pildain, Maria B. (2023) Phylogenetic relationships and taxonomy of Grifola (Polyporales). Mycological Progress, 22. 7.

Rowley, Olivia C., Courtney, Robert L., Northfield, Tobin D., and Seymour, Jamie E. (2023) Physiological and morphological responses of 'Irukandji' polyps to thermal and osmotic conditions: consequences for niche profiling. Hydrobiologia, 850. pp. 1207-1216.

Rowell, Misha K., and Rymer, Tasmin L. (2023) Problem solving of wild animals in the Wet Tropics of Queensland, Australia. Austral Ecology, 48 (2). pp. 313-322.

Rowell, Misha K., and Harrison, Natasha (2023) Problem-solving of the cylinder, tile and lever tasks by wild animals in Dryandra National Park, Western Australia. Austral Ecology, 48 (8). pp. 2030-2040.

Restrepo, Jaime, Webster, Emily G., Ramos, Iván, and Valverde, Roldán A. (2023) Recent decline of green turtle Chelonia mydas nesting trend at Tortuguero, Costa Rica. Endangered Species Research, 51. pp. 59-72.

Ross, Pauline M., Scanes, Elliot, Byrne, Maria, Ainsworth, Tracy, Donelson, Jennifer M., Foo, Shawna A., Hutchings, Pat, Thiyagarajan, Vengatesen, and Parker, Laura M. (2023) Surviving the Anthropocene: the resilience of marine animals to climate change. In: Hawkins, S.J., Todd, P.A., Russell, B.D., Lemasson, A.J., Allcock, A.L., Byrne, M., Firth, L.B., Lucas, C.H., Marzinelli, E.M., Mumby, P.J., Sharples, J., Smith, I.P., and Swearer, S.E., (eds.) Oceanography and Marine Biology: An Annual Review. Taylor & Francis, pp. 35-80.

Roura, Álvaro, Doyle, Stephen R., Castro-Bugallo, Alexandra, Hall, Nathan E., Gonzalez, Ángel F., and Strugnell, Jan M. (2023) Trophic ecology of Octopus vulgaris paralarvae along the Iberian Canary current eastern boundary upwelling system. Scientific Reports, 13. 8744.

Reid, Amanda, Sato, Noriyosi, Jolly, Jeffrey, and Strugnell, Jan (2023) Two new pygmy squids, Idiosepius kijimuna n.sp. and Kodama jujutsu n.gen., n.sp. (Cephalopoda: Idiosepiidae) from the Ryukyu Islands, Japan. Marine Biology, 170 (12). 167.

Rowell, Misha, and Rymer, Tasmin L. (2023) The consistency of exploration behaviours across life stages in a native Australian rodent, the fawn-footed mosaic-tailed rat Melomys cervinipes. Behavioural Processes, 207. 104857.

Rymer, Tasmin L., and Pillay, Neville (2023) The effects of antibiotics and illness on gut microbial composition in the fawn-footed mosaic-tailed rat (Melomys cervinipes). PLoS ONE, 18. e0281533.

Rochais, Celine, Rymer, Tasmin L., and Pillay, Neville (2022) Challenges in Linking Cognition and Survival: A Review. Frontiers in Ecology and Evolution, 10. 729546.

Rummer, Jodie L., and Illing, Björn (2022) Chapter 7 - Coral reef fishes in a multi-stressor world. In: Strailey, Katherine K., and Suski, Cory D., (eds.) Fish Physiology. Elsevier, Cambridge, United States, pp. 325-391.

Richardson, Kelly M., Schiffer, Michele, Ross, Perran A., Thia, Joshua A., and Hoffmann, Ary A. (2022) Characterization of the first Wolbachia from the genus Scaptodrosophila, a male-killer from the rainforest species S. claytoni. Insect Science, 29 (5). pp. 1401-1413.

Rye, Barbara L., Keighery, Greg J., and Barrett, Matthew D. (2022) Description of a new south-western Australian plant group, Hypocalymma sect. Grandiflora (Myrtaceae: Chamelaucieae: Astarteinae). Nuytsia, 33. pp. 233-249.

Rymer, Tasmin Lee, Rimbach, Rebecca, and Pillay, Neville (2022) Editorial: Proximate and ultimate approaches to behavior in a changing world. Frontiers in Ecology and Evolution, 10. 1064923.

Rowell, Misha K., and Rymer, Tasmin L. (2022) Memory enhances problem solving in the fawn‑footed mosaic‑tailed rat Melomys cervinipes. Animal Cognition, 25. pp. 347-358.

Rowell, Misha Kyla (2022) Ontogeny of problem solving in a native Australian rodent, the fawn-footed mosaic-tailed rat Melomys cervinipes. PhD thesis, James Cook University.

Rowell, Misha K., and Rymer, Tasmin L. (2022) Problem solving in fawn-footed mosaic-tailed rats Melomys cervinipes is not significantly influenced by maternal care or genetic effects. Journal of Experimental Zoology. Part A, Ecological And Integrative Physiology, 337 (8). pp. 802-811.

Rowe, Melissah, van Oort, Aaabel, Brouwer, Lyanne, Lifjeld, Jan T., Webster, Michael S., Welklin, Joseph F., and Baldassarre, Daniel T. (2022) Sperm numbers as a paternity guard in a wild bird. Cells, 11 (2). 231.

Rifai, Sami W., De Kauwe, Martin G., Ukkola, Anna M., Cernusak, Lucas A., Meir, Patrick, Medlyn, Belinda E., and Pitman, Andy J. (2022) Thirty-eight years of CO2 fertilization has outpaced growing aridity to drive greening of Australian woody ecosystems. Biogeosciences, 19 (2). pp. 491-515.

Ritmejeryte, Edita, Miller, Rebecca E., Bayly, Michael J., and Boughton, Berin A. (2022) Visualization of cyanogenic glycosides in floral tissues. In: Beale, David J., Hillyer, Katie, Warden, Andrew, and Jones, Oliver, (eds.) Applied Environmental Metabolomics - Community Insights and Guidance from the Field. Elsevier, London, United Kingdom, pp. 29-44.

Riddell, Pia, Paris, Monique C.J., Joonè, Carolynne J., Pageat, Patrick, and Paris, Damien B.B.P. (2021) Appeasing pheromones for the management of stress and aggression during conservation of wild canids: could the solution be right under our nose? Animals, 11 (6). 1574.

Rowell, Misha K., Santymire, Rachel M., and Rymer, Tasmin L. (2021) Corticosterone metabolite concentration is not related to problem solving in the fawn-footed mosaic-tailed rat Melomys cervinipes. Animals, 12 (1). 82.

Rymer, Tasmin L., Cruise, Megan, and Pillay, Neville (2021) Decision-making by bushveld gerbils (Gerbilliscus leucogaster). Journal of Comparative Psychology, 135 (2). pp. 244-257.

Rowell, Misha Kyla, and Rymer, Tasmin Lee (2021) Exploration influences problem solving in the fawn-footed mosaic-tailed rat (Melomys cervinipes). Ethology, 127 (7). pp. 592-604.

Ruscher, Roland, and Kupz, Andreas (2021) Home-o-static slowficiency. Science, 371 (6524). p. 23.

Radford, C.A., Collins, S.P., Munday, P. L., and Parsons, D. (2021) Ocean acidification effects on fish hearing. Proceedings of the Royal Society B: Biological Sciences, 288 (1946). 20202754.

Riedel, Jendrian, Zozaya, Stephen M., Hoskin, Conrad J., and Schwarzkopf, Lin (2021) Parallel evolution of toepads in rock-dwelling lineages of a terrestrial gecko (Gekkota: Gekkonidae: Heteronotia binoei). Zoological Journal of the Linnean Society, 193 (2). pp. 636-654.

Rowell, Misha K., Pillay, Neville, and Rymer, Tasmin L. (2021) Problem solving in animals: proposal for an ontogenetic perspective. Animals, 11 (3). 866. p. 866.

Rowley, Olivia C. (2021) Rethinking biological tools for logistically difficult species: a case study - the Irukandji (Carukia barnesi) and Box Jellyfish (Chironex fleckeri). PhD thesis, James Cook University.

Rouhan, Germinal, Boullet, Vincent, Field, Ashley, and Schuettpelz, Eric (2021) Three new combinations and one lectotypification of fern and lycophyte taxa from the French overseas territories. Phytotaxa, 497 (1). pp. 54-56.

Robin, Libby, and Day, Jon C. (2020) Maxwell Frank Cooper Day 1915-2017. Historical Records of Australian Science, 31 (1). pp. 39-53.

Riddell, Pia, Paris, Monique C.J., Joone, Carolynne, Pageat, Patrick, Ganswindt, Andre, Parker, Daniel M., Du Plessis, Cole, and Paris, Damien B.B.P. (2020) Novel appeasing pheromones to minimize stress during metapopulation management of African wild dogs. In: Abstracts from the 33rd Annual Conference of the Australasian Wildlife Management Society. p. 44. From: 33rd Annual Conference of the Australasian Wildlife Management Society, 8-10 December 2020, Online Event.

Rowell, Misha Kyla, and Rymer, Tasmin Lee (2020) Rodentia cognition. In: Vonk, J., and Shackelford, T.K., (eds.) Encyclopedia of Animal Cognition and Behavior. Springer Nature, Cham, Switzerland, pp. 1-9.

Rye, Barbara L., and Barrett, Matt (2020) A new species that’s worth its salt: Verticordia elizabethiae (Myrtaceae: chamelaucieae), a salt-tolerant rarity from semi-arid Western Australia. Nuytsia, 31. pp. 259-263.

Rymer, Tasmin L. (2020) The role of olfactory genes in the expression of rodent paternal care behavior. Genes, 11 (3). 292.

Rymer, Tasmin Lee (2019) Parental investment. In: Vonk, J, and Shackelford, T.K., (eds.) Encyclopedia of Animal Cognition and Behavior. Springer Nature, Cham, Switzerland, pp. 1-10.

Rajasekhar, Magha, Schmitz, Ulf, Flamant, Stephane, Wong, Justin J.-L., Bailey, Charles G., Ritchie, Willian, Holst, Jeff, and Rasko, John E.J. (2018) Identifying microRNA determinants of human myelopoiesis. Scientific Reports, 8. 7264.

Rummer, Jodie L. (2017) What if you can't sense your enemy... and your enemy is an invasive predator? Conservation Physiology, 5 (1).

Revell, B., Couper, P., Wilson, S., Amey, A., and Hoskin, C.J. (2017) A significant range extension for the Border Ranges Leaf-tailed Gecko, Saltuarius swaini (Wells & Wellington, 1985) (Reptilia: Carphodactylidae). Memoirs of the Queensland Museum - Nature, 60. pp. 185-191.

Raidal, S.R., Sarker, S., and Peters, A. (2015) Review of psittacine beak and feather disease and its effect on Australian endangered species. Australian Veterinary Journal, 93 (12). pp. 466-470.

Roman, Gheorghe, Riley, John, Vlahakis, Jason, Kinobe, Robert, Brien, James, Nakatsu, Kanji, and Szarek, Walter (2007) Heme oxygenase inhibition by 2-oxy-substituted 1-(1H-imidazol-1-yl)-4-phenylbutanes: Effect of halogen substitution in the phenyl ring. Bioorganic & Medicinal Chemistry, 15. pp. 3225-3234.

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Strugnell, Richard A., Newton, Hayley J., and Kupz, Andreas (2024) Survival strategies of intracellular bacterial pathogens. In: Tang, Yi-Wei, Hindiyeh, Musa, Liu, Dongyou, Sails, Andrew, Spearman, Paul, and Zhang, Jingren, (eds.) Molecular Medical Microbiology. Elsevier, London, United Kingdom, pp. 457-488.

Song, Lisheng, Xu, Yanhao, Liddell, Michael, Cui, Yaokui, Liu, Shaomin, and Xu, Peipei (2023) Application of a two source energy balance model coupled with satellite based soil moisture and thermal infrared data. ISPRS Journal of Photogrammetry and Remote Sensing, 204. pp. 15-26.

Suresh, Sneha, Mirasole, Alice, Ravasi, Timothy, Vizzini, Salvatrice, and Schunter, Celia (2023) Brain transcriptome of gobies inhabiting natural CO2 seeps reveal acclimation strategies to long-term acidification. Evolutionary Applications, 16 (7). pp. 1345-1358.

Sarker, Subir (2023) Complete Mitochondrial Genome Sequence of an Australian Little Crow (Corvus bennetti). Microbiology Resource Announcements, 12 (5). e01367-22.

Spiecker, Lisa, Curdt, Franziska, Bally, Andreas, Janzen, Nadja, Kraemer, Philipp, Leberecht, Bo, Kingsford, Michael J., Mouritsen, Henrik, Winklhofer, Michael, and Gerlach, Gabriele (2023) Coral reef fish larvae show no evidence for map-based navigation after physical displacement. iScience, 26 (6). 106950.

Sarker, Subir, and Phalen, David (2023) Detection of a Novel Alphaherpesvirus and Avihepadnavirus in a Plantar Papilloma from a Rainbow Lorikeet (Trichoglosis moluccanus). Viruses, 15 (10). 2106.

Simpson, Tiffany J.S., Wellington, Claire M., Lukehurst, Sherralee S., Huerlimann, Roger, Veilleux, Heather, Snow, Michael, Dias, Joana, and McDonald, Justin I. (2023) Development of a real-time PCR (qPCR) method for the identification of the invasive paddle crab Charybdis japonica (Crustacea, Portunidae). PeerJ, 11. e15522.

Silveira, Mayara M., Donelson, Jennifer M., McCormick, Mark I., Araujo-Silva, Heloysa, and Luchiari, Ana C. (2023) Impact of ocean warming on a coral reef fish learning and memory. PeerJ, 11. e15729.

Sutherland, M., and Sarker, S. (2023) Liver virome of a Little Corella (Cacatua sanguinea) reveals coinfection with a novel parvovirus and two beak and feather disease viruses. Australian Veterinary Journal. (In Press)

Sari, Rismita, Crayn, Darren, Dillon, Natalie, Gadek, Paul, and Abell, Sandra (2023) Molecular and morphological analysis supports the transfer of the monotypic Indonesian genus Septogarcinia Kosterm. to Garcinia (Clusiaceae). Reinwardtia, 22 (2). pp. 111-129.

Sarker, Subir, and Raidal, Shane R. (2023) A Novel Pathogenic Avipoxvirus Infecting Vulnerable Cook’s Petrel (Pterodroma cookii) in Australia Demonstrates a High Genomic and Evolutionary Proximity with South African Avipoxviruses. Microbiology Spectrum, 11 (2).

Schmitz, Ulf (2023) Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification. Methods in Molecular Biology, 2630 . Humana Press, New York, NY, USA, pp. 155-177.

Saper, Julia, Høj, Lone, Humphrey, Craig, and Bourne, David G. (2023) Quantifying capture and ingestion of live feeds across three coral species. Coral Reefs. (In Press)

Sorenson, Alanna E., and Schaeffer, Patrick M. (2023) Real-Time Temperature Sensing Using a Ratiometric Dual Fluorescent Protein Biosensor. Biosensors, 13 (3). 338.

Soo, Oi Yoon Michelle, Gastineau, Romain, Verdon, George, Winsor, Leigh, and Justine, Jean Lou (2023) Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes, Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome. Zootaxa, 5277 (3). pp. 585-599.

Schunter, Celia, Donelson, Jennifer M., Munday, Philip L., and Ravasi, Timothy (2023) Resilience and Adaptation to Local and Global Environmental Change. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 253-273.

Singh Ramesh, Arun (2023) Temperature and soil nutrient availability shape tree responses to elevation in the Australian Wet Tropics: growth, physiology, and chemistry. PhD thesis, James Cook University.

Singh Ramesh, Arun, Cheesman, Alexander W., Flores-Moreno, Habacuc, Preece, Noel D., Crayn, Darren M., and Cernusak, Lucas A. (2023) Temperature, nutrient availability, and species traits interact to shape elevation responses of Australian tropical trees. Frontiers in Forests and Global Change, 6. 1089167.

Streit, Robert P., and Bellwood, David R. (2023) To harness traits for ecology, let's abandon 'functionality'. Trends in Ecology and Evolution, 38 (5). pp. 402-411.

Sreedharan, Gayathri, Panwar, Yashwant Singh, Murthy, Saketh, Klop-Toker, Kaya, Ibanez, Roberto, Illueca, Estefany E., Webb, Rebecca, Govindappa, Venu, Subba, Barkha, Segu, Harika, Komanduri, Krishna Pavan Kumar, and Vasudevan, Karthikeyan (2023) A Universal and Efficient Detection of Chytridiomycosis Infections in Amphibians Using Novel Quantitative PCR Markers. Transboundary and Emerging Diseases, 2023. 9980566.

Siqueira, Alexandre C., Yan, Helen F., Morais, Renato A., and Bellwood, David R. (2023) The evolution of fast-growing coral reef fishes. Nature, 618. pp. 322-327.

Scheele, Ben C., Heard, Geoffrey W., Cardillo, Marcel, Duncan, Richard P., Gillespie, Graeme R., Hoskin, Conrad J., Mahony, Michael, Newell, David, Rowley, Jodi R.L., and Sopniewski, Jarrod (2023) An invasive pathogen drives directional niche contractions in amphibians. Nature Ecology & Evolution, 7. pp. 1682-1692.

Saper, Julia (2022) Augmented coral health: linking heterotrophic diets to the acquisition of probiotics in symbiotic scleractinia. Masters (Research) thesis, James Cook University.

Sidorczuk, Katarzyna, Gagat, Przemyslaw, Pietluch, Filip, Kala, Jakub, Rafacz, Dominik, Bakala, Laura, Slowik, Jadwiga, Kolenda, Rafal, Rodiger, Stefan, Fingerhut, Legana C.H.W., Cooke, Ira R., Mackiewicz, Pawel, and Burdukiewicz, Michal (2022) Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data. Briefings in Bioinformatics, 23 (5). bbac343.

Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Characterization of a Near-Complete Genome Sequence of a Chaphamaparvovirus from an Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (5). e00249-22.

Sarker, Subir (2022) Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease. Microbiology Resource Announcements, 11 (11). e01017-22.

Saggiomo, Silvia Luiza de Andrade (2022) Characterization of marine venoms. PhD thesis, James Cook University.

Schmidt, Casey Ann (2022) Characterization of peptides derived from marine organisms. PhD thesis, James Cook University.

Swan, Thomas Stanley Tonks (2022) Ecology and population genomics of Aedes albopictus in the Torres Strait, Australia. PhD thesis, James Cook University.

Shama, Lisa N.S., Donelson, Jennifer M., Eirin-Lopez, Jose M., and Ravasi, Timothy (2022) Editorial: Adaptation and Phenotypic Plasticity to Climate Change. Frontiers in Marine Science, 9. 893117.

Shu, Jacelyn J., Heuer, Rachael M., Hannan, Kelly D., Stieglitz, John D., Benetti, Daniel D., Rummer, Jodie L., Grosell, Martin, and Brauner, Colin J. (2022) Enhanced oxygen unloading in two marine percomorph teleosts. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 264. 111101.

Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2022) Evidence of a Possible Viral Host Switch Event in an Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Viruses, 14 (2). 302.

Siqueira Correa, Alexandre, Kiessling, Wolfgang, and Bellwood, David (2022) Fast-growing species shape the evolution of reef corals. Nature Communications, 13. 2426.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Ansorge, Rebecca, Sadowski, Miriam, Gruber-Vodicka, Harald, Dubilier, Nicole, and Kleiner, Manuel (2022) Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium. Microbiome, 10. 178.

Salamena, Gerry Giliant (2022) Flushing processes in the shallow-silled tropical fjord of Ambon Bay, eastern Indonesia. PhD thesis, James Cook University.

Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Genome Sequence of a Beak and Feather Disease Virus from an Unusual Novel Host, Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (4). e00172-22.

Settle, Damian, and Cernusak, Lucas (2022) Growing Strangler Figs in Coconuts. Ideation of Carbon-negative, Living Infrastructure. In: Community Empowerment, Sustainable Cities, and Transformative Economies. pp. 167-189. From: BEMAS: 1st International Conference in Business, Economics, Management, and Sustainability, 2-3 July 2021, Cairns, QLD, Australia.

Sarker, Subir, and Sutherland, Michelle (2022) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian little crow (Corvus bennetti) directly from the clinical sample. Scientific Reports, 12 (1). 15053.

Schmidt, Casey A., Cooke, Ira, Wilson, David T., Miller, David J., Peigneur, Steve, Tytgat, Jan, Field, Matthew, Takjoo, Rozita, Smout, Michael J., Loukas, Alex, and Daly, Norelle L. (2022) Newly Discovered Peptides from the Coral Heliofungia actiniformis Show Structural and Functional Diversity. Journal of Natural Products, 85 (7). pp. 1789-1798.

Spinks, Rachel K., Donelson, Jennifer M., Bonzi, Lucrezia C., Ravasi, Timothy, and Munday, Philip L. (2022) Parents exposed to warming produce offspring lower in weight and condition. Ecology and Evolution, 12 (7). e9044.

Saadi, Ahmed J., Bibermair, Julian, Kocot, Kevin M., Roberts, Nickellaus G., Hirose, Masato, Calcino, Andrew, Baranyi, Christian, Chaichana, Ratcha, Wood, Timothy S., and Schwaha, Thomas (2022) Phylogenomics reveals deep relationships and diversification within phylactolaemate bryozoans. Proceedings of the Royal Society of London Series B, Biological Sciences, 289 (1986). 20221504.

Sarker, Subir (2022) Special Issue: Emerging Wildlife Viral Diseases. Viruses, 14 (4). 807.

Schmitz, Ulf, Wolkenhauer, Olaf, and Vera-González, Julio (2022) Systems Biology of MicroRNAs in Cancer. Advances in Experimental Medicine and Biology, 1385 . Springer Cham.

Salamena, Gerry Giliant, Whinney, James C., and Heron, Scott F. (2022) Vertical circulation due to deep-water renewal and phytoplankton blooms in the tropical fjord of Ambon Bay, eastern Indonesia. Journal of Marine Systems, 234. 103776.

Schulreich, Stephan, M., Salamanca-Diaz, David A., Zieger, Elisabeth, Calcino, Andrew, and Wanninger, Andreas (2022) A mosaic of conserved and novel modes of gene expression and morphogenesis in mesoderm and muscle formation of a larval bivalve. Organisms Diversity and Evolution, 22. pp. 893-913.

Schlaefer, Jodie A., Wolanski, Eric, Lambrechts, Jonathan, and Kingsford, Michael J. (2021) Behavioural and oceanographic isolation of an island-based jellyfish (Copula sivickisi, Class Cubozoa) population. Scientific Reports, 11. 10280.

Schmitz, Ulf, Monteuuis, Geoffray, Petrova, Veronika, Shah, Jaynish S., and Rasko, John E.J. (2021) Computational methods for intron retention identification and quantification. In: Wolkenhauer, Olaf, Cai, Yudong, and Rozman, Damjana, (eds.) Systems Medicine: integrative, qualitative and computational approaches. Academic Press, London Wall, United Kingdom, pp. 63-74.

Schunter, Celia, Jarrold, Michael D., Munday, Philip L., and Ravasi, Timothy (2021) Diel pCO2 fluctuations alter the molecular response of coral reef fishes to ocean acidification conditions. Molecular Ecology, 30 (20). pp. 5105-5118.

Sarker, Subir, Athukorala, Ajani, Nyandowe, Tadiwa, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Pathogens, 10 (5). 575.

Sarker, Subir, Athukorala, Ajani, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes). Viruses, 13 (2). 194.

Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2021) Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae). Virology, 562. pp. 121-127.

Sachslehner, Attila, Zieger, Elisabeth, Calcino, Andrew, and Wanninger, Andreas (2021) HES and Mox genes are expressed during early mesoderm formation in a mollusk with putative ancestral features. Scientific Reports, 11. 18030.

Streit, Robert P., Hemingson, Christopher R., Cumming, Graeme S., and Bellwood, David R. (2021) How flexible are habitat specialists? Short-term space use in obligate coral-dwelling damselfishes. Reviews in Fish Biology and Fisheries, 31. pp. 381-398.

Sweet, Michael, Villela, Helena, Keller-Costa, Tina, Costa, Rodrigo, Romano, Stefano, Bourne, David G., Cárdenas, Anny, Huggett, Megan J., Kerwin, Allison H., Kuek, Felicity, Medina, Monica, Meyer, Julie L., Müller, Moritz, Pollock, F. Joseph, Rappé, Michael S., Sere, Mathieu, Sharp, Koty H., Voolstra, Christian R., Zaccardi, Nathan, Ziegler, Maren, and Peixoto, Raquel (2021) Insights into the cultured bacterial fraction of corals. mSystems, 6 (3). e01249-20.

Sarker, Subir (2021) Metagenomic detection and characterisation of multiple viruses in apparently healthy Australian Neophema birds. Scientific Reports, 11 (1). 20915.

Sarker, Subir (2021) Molecular and Phylogenetic Characterisation of a Highly Divergent Novel Parvovirus (Psittaciform Chaphamaparvovirus 2) in Australian Neophema Parrots. Pathogens, 10 (12). 1559.

Sarker, Subir, Athukorala, Ajani, and Raidal, Shane R. (2021) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian passerine bird, mudlark (Grallina cyanoleuca). Virology, 554. pp. 66-74.

Su, Chinh Tran-To, Lua, Wai-Heng, Poh, Jun-Jie, Ling, Wei-Li, Yeo, Joshua-Yi, and Gan, Samuel Ken-En (2021) Molecular insights of nickel binding to therapeutic antibodies as a possible new antibody superantigen. Frontiers in Immunology, 12. 676048.

Salamanca-Díaz, David A., Calcino, Andrew D., de Oliveira, André L., and Wanninger, Andreas (2021) Non-collinear Hox gene expression in bivalves and the evolution of morphological novelties in mollusks. Scientific Reports, 11. 3575.

Spinks, Rachel K. (2021) Phenotypic plasticity to warming in coral reef fishes: the importance of sex and exposure timing within and between generations. PhD thesis, James Cook University.

Santaquiteria, Aintzane, Siqueira, Alexandre C., Duarte-Ribeiro, Emanuell, Carnevale, Giorgio, White, William T., Pogonoski, John J., Baldwin, Carole C., Ortí, Guillermo, Arcila, Dahiana, and Ricardo, Betancur R. (2021) Phylogenomics and historical biogeography of seahorses, dragonets, goatfishes, and allies (Teleostei: syngnatharia): assessing factors driving uncertainty in biogeographic inferences. Systematic Biology, 70 (6). pp. 1145-1162.

Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F. (2021) Planktivores as trophic drivers of global coral reef fish diversity patterns. Proceedings of the National Academy of Sciences of the United States of America, 118 (9). e2019404118.

Sarker, Subir, Athukorala, Ajani, Talukder, Saranika, Haque, Md Hakimul, Helbig, Karla, Lavers, Jennifer L., and Raidal, Shane R. (2021) Resolution of the phylogenetic relationship of the vulnerable flesh-footed shearwater (Ardenna carneipes) seabird using a complete mitochondrial genome. Mitochondrial DNA Part B: Resources, 6 (4). pp. 1507-1511.

Spinks, Rachel K., Bonzi, Lucrezia C., Ravasi, Timothy, Munday, Philip L., and Donelson, Jennifer M. (2021) Sex- and time-specific parental effects of warming on reproduction and offspring quality in a coral reef fish. Evolutionary Applications, 14 (4). pp. 1145-1158.

Swan, T., Ritmejeryte, E., Sebayang, B., Jones, R., Devine, Gregor, Graham, M., Zich, F.A., Staunton, K., Russell, T.L., and Burkot, T.R. (2021) Sugar prevalence in Aedes albopictus differs by habitat, sex and time of day on Masig Island, Torres Strait, Australia. Parasites & Vectors, 14. 520.

Sun, Eun Jin, Wankell, Miriam, Palamuthusingam, Pranavan, McFarlane, Craig, and Hebbard, Lionel (2021) Targeting the PI3K/Akt/mTOR pathway in hepatocellular carcinoma. Biomedicines, 9 (11). 1639.

Seppelt, Rod D., Meagher, David, Cairns, Andi, and Franks, Andrew (2021) The moss family Calymperaceae (Bryophyta) in Australia part 1: introduction and key to genera. Telopea, 24. pp. 247-252.

Sathkumara, Harindra D., Eaton, Janet L., Field, Matt A., Govan, Brenda L., Ketheesan, Natkunam, and Kupz, Andreas (2021) A murine model of tuberculosis/type 2 diabetes comorbidity for investigating the microbiome, metabolome and associated immune parameters. Animal Models and Experimental Medicine, 4 (2). pp. 181-188.

Schmitz, Ulf, Shah, Jaynish S., Dhungel, Bijay P., Monteuuis, Geoffray, Luu, Phuc-Loi, Petrova, Veronika, Metierre, Cynthia, Nair, Shalima S., Bailey, Charles G., Saunders, Verity A., Turhan, Ali G., White, Deborah L., Branford, Susan, Clark, Susan J., Hughes, Timothy P., Wong, Justin J.-L., and Rasko, John E.J. (2020) Widespread aberrant alternative splicing despite molecular remission in chronic myeloid leukaemia patients. Cancers, 12 (12). 3738.

Schlaefer, Jodie Anne (2020) Determining the population structures of cubozoan jellyfishes with biophysical modelling. PhD thesis, James Cook University.

Shima, Amy L., Vaz, Paola K., Johnson, Linda, Devlin, Joanne M., and Skerratt, Lee F. (2020) Herpesvirus infection in Lumholtz’s tree-kangaroo (Dendrolagus lumholtzi). Journal of Wildlife Diseases, 56 (4). pp. 912-917.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Dubilier, Nicole, and Kleiner, Manuel (2020) High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology Resource Announcements, 9 (16). e00276-20.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Woyke, Tanja, Dubilier, Nicole, and Kleiner, Manuel (2020) High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology Resource Announcements, 9 (31). e00704-20.

Schmidt, Casey A., Wilson, David T., Cooke, Ira, Potriquet, Jeremy, Tungatt, Katie, Muruganandah, Visai, Boote, Chloe, Kuek, Felicity, Miles, John J., Kupz, Andreas, Ryan, Stephanie, Loukas, Alex, Bansal, Paramjit S., Takjoo, Rozita, Miller, David J., Peigneur, Steve, Tytgat, Jan, and Daly, Norelle (2020) Identification and characterization of a peptide from the stony coral Heliofungia actiniformis. Journal of Natural Products, 83 (11). pp. 3454-3463.

Sarker, Subir, Batinovic, Steven, Talukder, Saranika, Das, Shubhagata, Park, Fiona, Petrovski, Steve, Forwood, Jade K., Helbig, Karla J., and Raidal, Shane R. (2020) Molecular characterisation of a novel pathogenic avipoxvirus from the Australian magpie (Gymnorhina tibicen). Virology, 540. pp. 1-16.

Shi, Wenyuan, Liu, Fang, Liu, An, Huang, Huiyang, Lin, Qi, Zeng, Chaoshu, and Ye, Haihui (2020) Roles of gonad-inhibiting hormone in the protandric simultaneous hermaphrodite peppermint shrimp. Biology of Reproduction, 103 (4). pp. 817-827.

Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F. (2020) Trophic innovations fuel reef fish diversification. Nature Communications, 11. 2669.

Siqueira Correa, Alexandre (2020) The evolution, macroecology and biogeography of coral reef fishes: a trophic perspective. PhD thesis, James Cook University.

Sarker, Subir, Talukder, Saranika, Sutherland, Michelle, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) Characterization of the first mitochondrial genome of a little Corella (Cacatua sanguinea) and its phylogenetic implications. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3792-3794.

Schmitz, Ulf, Gupta, Shailendra K., Vera, Julio, and Wolkenhauer, Olaf (2019) Computational approaches in microRNA biology. In: Narayan, Roger, (ed.) Encyclopedia of Biomedical Engineering. Elsevier, Amsterdam, The Netherlands, pp. 317-330.

Sarker, Subir, Isberg, Sally R., Moran, Jasmin L., De Araujo, Rachel, Elliott, Nikki, Melville, Lorna, Beddoe, Travis, and Helbig, Karla J. (2019) Crocodilepox Virus Evolutionary Genomics Supports Observed Poxvirus Infection Dynamics on Saltwater Crocodile (Crocodylus porosus). Viruses, 11 (12). 1116.

Su, Zhiduan, Burchfield, James G., Yang, Pengyi, Humphrey, Sean J., Yang, Guang, Francis, Deanne, Yasmin, Sabina, Shin, Sung-Young, Norris, Dougall M., Kearney, Alison L., Astore, Miro A., Scavuzzo, Jonathan, Fisher-Wellman, Kelsey H., Wang, Qiao-Ping, Parker, Benjamin L., Neely, G. Gregory, Vafaee, Fatemeh, Chiu, Joyce, Yeo, Reichelle, Hogg, Philip J., Fazakerley, Daniel J., Nguyen, Lan K., Kuyucak, Serdar, and James, David E. (2019) Global redox proteome and phosphoproteome analysis reveals redox switch in Akt. Nature Communications, 10. 5486.

Shafee, Thomas, Mitchell, Michela L., and Norton, Raymond S. (2019) Mapping the chemical and sequence space of the ShKT superfamily. Toxicon, 165. pp. 95-102.

Sutherland, Michelle, Sarker, Subir, and Raidal, Shane R. (2019) Molecular and microscopic characterisation of a novel pathogenic herpesvirus from Indian ringneck parrots (Psittacula krameri). Veterinary Microbiology, 239. 108428.

Sarker, Subir, Das, Shubhagata, Ghorashi, Seyed A., Forwood, Jade K., and Raidal, Shane R. (2019) Pigeon circoviruses from feral pigeons in Australia demonstrate extensive recombination and genetic admixture with other circoviruses. Avian Pathology, 48 (6). pp. 512-520.

Silcock, J.L., Field, Ashley, Walsh, N.G., and Fensham, R.J. (2019) To name those lost: assessing extinction likelihood in the Australian vascular flora. Oryx, 54. pp. 167-177.

Sarker, Subir, Sutherland, Michelle, Talukder, Saranika, Das, Shubhagata, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) The first complete mitogenome of Indian ringneck (Psittacula krameri) demonstrates close phylogenetic relationship with Eclectus parrot. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3579-3581.

Sarker, S., Das, S., Helbig, K., Peters, A., and Raidal, S.R. (2018) Genome sequence of an Australian strain of canid alphaherpesvirus 1. Australian Veterinary Journal, 96 (1-2). pp. 24-27.

Sarker, Subir, Isberg, Sally R., Milic, Natalie L., Lock, Peter, and Helbig, Karla J. (2018) Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia. Scientific Reports, 8 (1). 5623.

Sarker, Subir, Wang, Yinan, Warren-Smith, Brenden, and Helbig, Karla J. (2017) Dynamic changes in host gene expression following in vitro viral mimic stimulation in crocodile cells. Frontiers in Immunology, 8. 1634.

Sarker, Subir, Das, Shubhagata, Lavers, Jennifer L., Hutton, Ian, Helbig, Karla, Imbery, Jacob, Upton, Chris, and Raidal, Shane R. (2017) Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). BMC Genomics, 18 (1). 298.

Schmitz, Ulf, Pinello, Natalia, Jia, Fangzhi, Alasmari, Sultan, Ritchie, William, Keightley, Maria-Cristina, Shini, Shaniko, Lieschke, Graham J., Wong, Justin J-L., and Rasko, John E.J. (2017) Intron retention enhances gene regulatory complexity in vertebrates. Genome Biology, 18. 216.

Sarker, Subir, Roberts, Hayley K., Tidd, Naomie, Ault, Shayne, Ladmore, Georgia, Peters, Andrew, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. Scientific Reports, 7. 16472.

Sato, Yui, Ling, Edmund Y.S., Turaev, Dmitrij, Laffy, Patrick, Weynberg, Karen D., Rattei, Thomas, Willis, Bette L., and Bourne, David G. (2017) Unraveling the microbial processes of black band disease in corals through integrated genomics. Scientific Reports, 7. 40455.

Sarker, Subir, Lloyd, Chris, Forwood, Jade, and Raidal, Shane R. (2016) Forensic genetic evidence of beak and feather disease virus infection in a Powerful Owl, Ninox strenua. Emu, 116 (1). pp. 71-74.

Sarker, Subir, Das, Shubhagata, Helbig, Karla, and Raidal, Shane R. (2016) Identification of beak and feather disease virus in an unusual novel host (Merops ornatus) using nested PCR. Genome Announcements, 4 (6). e0137616.

Schmitz, Ulf, Naderi-Meshkin, Hojjat, Gupta, Shailendra K., Wolkenhauer, Olaf, and Vera, Julio (2016) The RNA world in the 21st century-a systems approach to finding non-coding keys to clinical questions. Briefings in Bioinformatics, 17 (3). pp. 380-392.

Sarker, Subir, Terrón, María C., Khandokar, Yogesh, Aragão, David, Hardy, Joshua M., Radjainia, Mazdak, Jiménez-Zaragoza, Manuel, De Pablo, Pedro J., Coulibaly, Fasséli, Luque, Daniel, Raidal, Shane R., and Forwood, Jade K. (2016) Structural insights into the assembly and regulation of distinct viral capsid complexes. Nature Communications, 7. 13014.

Sarker, Subir, Das, Shubhagata, Forwood, Jade, Helbig, Karla, and Raidal, Shane R. (2016) The complete mitochondrial genome sequence of an Endangered powerful owl (Ninox strenua). Mitochondrial DNA Part B: Resources, 1 (1). pp. 722-723.

Sarker, S., Forwood, J.K., Ghorashi, S.A., Peters, A., and Raidal, S.R. (2015) Beak and feather disease virus genotypes in Australian parrots reveal flexible host-switching. Australian Veterinary Journal, 93 (12). pp. 471-475.

Sarker, Subir, Moylan, Kathy G., Ghorashi, Seyed A., Forwood, Jade K., Peters, Andrew, and Raidal, Shane R. (2015) Evidence of a deep viral host switch event with beak and feather disease virus infection in rainbow bee-eaters (Merops ornatus). Scientific Reports, 5. 14511.

Sarker, Subir, Ghorashi, Seyed A., Swarbrick, Crystall M.D., Khandokar, Yogesh B., Himiari, Zainab, Forwood, Jade K., and Raidal, Shane R. (2015) An efficient approach for recombinant expression and purification of the viral capsid protein from beak and feather disease virus (BFDV) in Escherichia coli. Journal of Virological Methods, 215-216.

Schmitz, Ulf, Lai, Xin, Winter, Felix, Wolkenhauer, Olaf, Vera, Julio, and Gupta, Shailendra (2014) Cooperative gene regulation by microRNA pairs and their identification using a computational workflow. Nucleic Acids Research, 42 (12). pp. 7539-7552.

T

Tebbett, Sterling B., Bellwood, David R., Bassett, Tahlia, Cuttler, Michael V.W., Moustaka, Molly, Wilson, Shaun K., Yan, Helen F., and Evans, Richard D. (2024) The limited role of herbivorous fishes and turf-based trophic pathways in the functioning of turbid coral reefs. Reviews in Fish Biology and Fisheries, 34 (1). pp. 349-460.

Terzin, Marko, Laffy, Patrick W., Robbins, Steven, Yeoh, Yun Kit, Frade, Pedro R., Glasl, Bettina, Webster, Nicole S, and Bourne, David G. (2024) The road forward to incorporate seawater microbes in predictive reef monitoring. Environmental Microbiome, 19. 5.

Taite, M., Dillon, L., Strugnell, J.M., Drewery, J., and Allcock, A.L. (2023) DNA barcoding reveals unexpected diversity of deep-sea octopuses in the north-east Atlantic. Biology and Environment, 123 (1). pp. 1-12.

Todd, Stephanie J., McKnight, Donald T., Congdon, Brad C., Pierson, Jennifer, Fischer, Manuela, Abell, Sandra, and Koleck, Jessica (2023) Diversity and structure of Bettongia tropica: using population genetics to guide reintroduction and help prevent the extinction of an endangered Australian marsupial. Conservation Genetics. (In Press)

Thomas, Peyton A., Peele, Emily E., Wheeler, Carolyn R., Yopak, Kara, Rummer, Jodie L., Mandelman, John W., and Kinsey, Stephen T. (2023) Effects of projected end-of-century temperature on the muscle development of neonate epaulette sharks, Hemiscyllium ocellatum. Marine Biology, 170. 71.

Trigo, Sandra, Narvaez, Pauline, Cardoso, Gonçalo C., and Soares, Marta C. (2023) Not so monochromatic: Size-dependency of both sex and color in the cleaner wrasse Labroides dimidiatus. Frontiers in Ecology and Evolution, 11. 1110079.

Tan, Siong, Harris, Jessica, Roque, Breanna M., Askew, Shane, and Kinley, Robert D. (2023) Shelf-life stability of Asparagopsis bromoform in oil and freeze-dried powder. Journal of Applied Phycology, 35. pp. 291-299.

Takahashi, Miwa, Wakefield, Corey B., Newman, Stephen J., Hillcoat, Kyle B., Saunders, Benjamin J., and Harvey, Euan S. (2023) Utility of body and otolith morphometry to discriminate cryptic juveniles of two sympatric red snappers (Perciformes: Lutjanidae). Journal of Fish Biology, 103 (6). pp. 1312-1320.

Tebbett, Sterling B., Bennett, Scott, and Bellwood, David R. (2023) A functional perspective on the meaning of the term ‘herbivore’: patterns versus processes in coral reef fishes. Coral Reefs. (In Press)

Takjoo, Rozita (2022) Characterisation of disulfide-rich peptides exploring potential wound healing properties. PhD thesis, James Cook University.

Tea, Yi-Kai, Xu, Xin, Dibattista, Joseph D., Lloyd, Jonathan, Cowman, Peter F., and Ho, Simon Y.W. (2022) Phylogenomic Analysis of Concatenated Ultraconserved Elements Reveals the Recent Evolutionary Radiation of the Fairy Wrasses (Teleostei: Labridae: Cirrhilabrus). Systematic Biology, 71 (1). pp. 1-12.

Thomas, Luke, Underwood, Jim N., Rose, Noah H., Fuller, Zachary L., Richards, Zoe T., Dugal, Laurence, Grimaldi, Camille M., Cooke, Ira R., Palumbi, Stephen, and Gilmour, James P. (2022) Spatially varying selection between habitats drives physiological shifts and local adaptation in a broadcast spawning coral on a remote atoll in Western Australia. Science Advances, 8 (17). eabl9185.

Thobor, Bianca, Tilstra, Arjen, Bourne, David G, Springer, Karin, Mezger, Selma Deborah, Struck, Ulrich, Bockelmann, Franziska, Zimmermann, Lisa, Yánez Suárez, Ana Belen, Klinke, Annabell, and Wild, Christian (2022) The pulsating soft coral Xenia umbellata shows high resistance to warming when nitrate concentrations are low. Scientific Reports, 12 (1). 16788.

Tebbett, Sterling B., and Bellwood, David R. (2021) Algal turf productivity on coral reefs: a meta-analysis. Marine Environmental Research, 168. 105311.

Taylor, Lauren, Wankell, Miriam, Saxena, Pankaj, McFarlane, Craig McFarlane, and Hebbard, Lionel (2021) Cell adhesion an important determinant of myogenesis and satellite cell activity. Biochimica et Biophysica Acta. Molecular Cell Research, 1869 (2). 119170.

Toft, Casey J. (2021) Defining the ancestral replication fork trap in Tus-dependent bacteria. Masters (Research) thesis, James Cook University.

Thompson, Cassandra A., Hoey, Andrew S., Montanari, Stefano R., Messmer, Vanessa, Doll, Peter C., and Pratchett, Morgan S. (2021) Territoriality and condition of chevron butterflyfish (Chaetodon trifascialis) with varying coral cover on the great barrier reef, Australia. Environmental Biology of Fishes, 104. pp. 53-69.

Thurber, Rebecca Vega, Mydlarz, Laura D., Brandt, Marilyn, Harvell, Drew, Weil, Ernesto, Raymundo, Laurie, Willis, Bette L., Langevin, Stan, Tracy, Allison M., Littman, Raechel, Kemp, Keri M., Dawkins, Phoebe, Prager, Katherine C., Garren, Melissa, and Lamb, Joleah (2020) Deciphering coral disease dynamics: integrating host, microbiome, and the changing environment. Frontiers in Ecology and Evolution, 8. 575927.

Terraneo, Tullia Isotta (2020) Diversity, phylogeography and taxonomy of hard corals in the genus Porites. PhD thesis, James Cook University.

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Tsai, Cheng-Han (2020) Variation in relative species abundance of reef fishes: drivers and ecosystem impacts. PhD thesis, James Cook University.

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